Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 07:27:27 (21304): vboxwrapper version 26210
2025-10-10 07:27:27 (21304): BOINC client version: 8.2.4
2025-10-10 07:27:28 (21304): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-10-10 07:27:28 (21304): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 07:27:28 (21304): Create VM. (boinc_6df36e18fc6bac0b, slot#6)
2025-10-10 07:27:29 (21304): Setting Memory Size for VM. (4700MB)
2025-10-10 07:27:29 (21304): Setting CPU Count for VM. (7)
2025-10-10 07:27:29 (21304): Setting Chipset Options for VM.
2025-10-10 07:27:30 (21304): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 07:27:30 (21304): Setting Boot Options for VM.
2025-10-10 07:27:30 (21304): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 07:27:31 (21304): Enabling VM Network Access.
2025-10-10 07:27:31 (21304): Disabling USB Support for VM.
2025-10-10 07:27:31 (21304): Disabling COM Port Support for VM.
2025-10-10 07:27:31 (21304): Disabling LPT Port Support for VM.
2025-10-10 07:27:32 (21304): Disabling Audio Support for VM.
2025-10-10 07:27:32 (21304): Disabling Clipboard Support for VM.
2025-10-10 07:27:32 (21304): Disabling Drag and Drop Support for VM.
2025-10-10 07:27:33 (21304): Adding storage controller(s) to VM.
2025-10-10 07:27:33 (21304): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 07:27:35 (21304): Adding VirtualBox Guest Additions to VM.
2025-10-10 07:27:35 (21304): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 07:27:35 (21304): forwarding host port 58621 to guest port 80
2025-10-10 07:27:36 (21304): Enabling remote desktop for VM.
2025-10-10 07:27:36 (21304): Required extension pack not installed, remote desktop not enabled.
2025-10-10 07:27:36 (21304): Enabling shared directory for VM.
2025-10-10 07:27:36 (21304): Starting VM using VBoxManage interface. (boinc_6df36e18fc6bac0b, slot#6)
2025-10-10 07:27:47 (21304): Successfully started VM. (PID = '21296')
2025-10-10 07:27:47 (21304): Reporting VM Process ID to BOINC.
2025-10-10 07:27:47 (21304): Guest Log: BIOS: VirtualBox 7.1.0
2025-10-10 07:27:47 (21304): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 07:27:47 (21304): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 07:27:47 (21304): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 07:27:47 (21304): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 07:27:47 (21304): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 07:27:47 (21304): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 07:27:47 (21304): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 07:27:47 (21304): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 07:27:47 (21304): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 07:27:47 (21304): Detected: Web Application Enabled (http://localhost:58621)
2025-10-10 07:27:47 (21304): Preference change detected
2025-10-10 07:27:47 (21304): Setting CPU throttle for VM. (90%)
2025-10-10 07:27:47 (21304): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 07:27:54 (21304): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 07:27:54 (21304): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 07:27:59 (21304): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.000105 main     Log opened 2025-10-10T07:27:56.588287000Z
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.000166 main     OS Product: Linux
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.000205 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.000226 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.000253 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.000254 main     Process ID: 1359
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.000254 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 07:27:59 (21304): Guest Log: 00:00:00.001671 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 07:27:59 (21304): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 07:27:59 (21304): Guest Log: [INFO] Mounting shared directory
2025-10-10 07:27:59 (21304): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 07:28:09 (21304): Guest Log: 00:00:10.016695 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 229 545 000ns (GuestNow=1 760 074 088 361 610 000 ns GuestLast=1 760 081 276 591 155 000 ns fSetTimeLastLoop=true )
2025-10-10 07:28:29 (21304): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 07:28:29 (21304): Guest Log: [INFO] Detected branch: prod
2025-10-10 07:28:31 (21304): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 07:28:31 (21304): Guest Log: Copying input files
2025-10-10 07:28:33 (21304): Guest Log: Copied input files into RunAtlas.
2025-10-10 07:28:33 (21304): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 07:28:33 (21304): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 07:28:33 (21304): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 07:28:33 (21304): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 07:28:48 (21304): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 07:28:50 (21304): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 07:28:50 (21304): Guest Log: 2.6.3.0 1661 0 30168 151535 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 07:28:51 (21304): Guest Log: copied the webapp to /var/www
2025-10-10 07:28:51 (21304): Guest Log: ATHENA_PROC_NUMBER=7
2025-10-10 07:28:51 (21304): Guest Log: ATHENA_CORE_NUMBER=7
2025-10-10 07:28:53 (21304): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 07:28:53 (21304): Guest Log:  *** Starting ATLAS job. (PandaID=6828226816 taskID=46376994) ***
2025-10-10 08:28:48 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 08:29:08 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 08:31:28 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 08:31:49 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 08:55:40 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 08:56:00 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 09:07:50 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 09:08:10 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 09:09:20 (21304): Status Report: Elapsed Time: '6000.987284'
2025-10-10 09:09:20 (21304): Status Report: CPU Time: '16563.015625'
2025-10-10 09:15:52 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 09:16:11 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 09:17:42 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 09:18:02 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 09:20:42 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 09:21:02 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 09:23:42 (21304): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 09:24:02 (21304): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 09:31:53 (21304): Guest Log:  *** Job finished ***
2025-10-10 09:31:53 (21304): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:28:56,811 | INFO     | all workflow threads have been joined
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:28:56,812 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:28:56,813 | INFO     | traces error code: 0
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:28:56,813 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,238 | INFO     | PID=6205 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,239 | INFO     | found 0 job(s) in 20 queues
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,239 | INFO     | [monitor] control thread has ended
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,294 [wrapper] ==== pilot stdout END ====
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,300 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,305 [wrapper] pilotpid: 6205
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:12,310 [wrapper] Pilot exit status: 0
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:14,327 [wrapper] pandaids: 6828226816
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:14,408 [wrapper] cleanup supervisor_pilot  3625 6206
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:14,414 [wrapper] Test setup, not cleaning
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:14,422 [wrapper] apfmon messages muted
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:14,427 [wrapper] ==== wrapper stdout END ====
2025-10-10 09:31:53 (21304): Guest Log: 2025-10-10 07:29:14,432 [wrapper] ==== wrapper stderr END ====
2025-10-10 09:31:53 (21304): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 09:31:53 (21304): Guest Log:     "exeErrorCode": 0,
2025-10-10 09:31:53 (21304): Guest Log:     "exeErrorDiag": "",
2025-10-10 09:31:53 (21304): Guest Log:     "pilotErrorCode": 0,
2025-10-10 09:31:53 (21304): Guest Log:     "pilotErrorDiag": "",
2025-10-10 09:31:53 (21304): Guest Log:  *** Listing of results directory ***
2025-10-10 09:31:53 (21304): Guest Log: total 199544
2025-10-10 09:31:53 (21304): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  3 09:22 pilot3.tar.gz
2025-10-10 09:31:53 (21304): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  3 09:38 queuedata.json
2025-10-10 09:31:53 (21304): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  3 09:38 runpilot2-wrapper.sh
2025-10-10 09:31:53 (21304): Guest Log: -rwxr-xr-x. 1 atlas atlas      8728 Oct 10 05:28 init_data.xml
2025-10-10 09:31:53 (21304): Guest Log: -rwxr-xr-x. 1 atlas atlas    565609 Oct 10 05:28 input.tar.gz
2025-10-10 09:31:53 (21304): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 05:28 start_atlas.sh
2025-10-10 09:31:53 (21304): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 05:28 EVNT.46376992._000579.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 09:31:53 (21304): Guest Log: -rw-r--r--. 1 atlas atlas      2560 Oct 10 05:28 pandaJob.out
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 05:41 agis_ddmendpoints.agis.ALL.json
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas    975446 Oct 10 05:42 agis_schedconf.cvmfs.json
2025-10-10 09:31:53 (21304): Guest Log: drwx------. 4 atlas atlas      4096 Oct 10 05:42 pilot3
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas 198173053 Oct 10 07:28 HITS.46376994._016130.pool.root.1
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 10 07:28 memory_monitor_summary.json
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas    321889 Oct 10 07:28 log.46376994._016130.job.log.tgz.1
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas      7801 Oct 10 07:28 heartbeat.json
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 07:29 pilot_heartbeat.json
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas       744 Oct 10 07:29 pilotlog.txt
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas    851698 Oct 10 07:29 log.46376994._016130.job.log.1
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 07:29 output.list
2025-10-10 09:31:53 (21304): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 07:29 runtime_log
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas   1187840 Oct 10 07:29 result.tar.gz
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas       651 Oct 10 07:29 uVqKDmWQrO8n9Rq4apOajLDm4fhM0noT9bVof3QYDmcEBMDm1QZwhm.diag
2025-10-10 09:31:53 (21304): Guest Log: -rw-r--r--. 1 atlas atlas      8626 Oct 10 07:29 runtime_log.err
2025-10-10 09:31:53 (21304): Guest Log: Looking for outputfile HITS.46376994._016130.pool.root.1
2025-10-10 09:31:53 (21304): Guest Log: HITS file was successfully produced
2025-10-10 09:31:53 (21304): Guest Log: -rw-------. 1 atlas atlas 198173053 Oct 10 07:28 /home/atlas/RunAtlas/HITS.46376994._016130.pool.root.1
2025-10-10 09:31:54 (21304): Guest Log: Successfully finished the ATLAS job!
2025-10-10 09:31:54 (21304): Guest Log: Copying the results back to the shared directory!
2025-10-10 09:31:54 (21304): Guest Log:  *** Contents of shared directory: ***
2025-10-10 09:31:54 (21304): Guest Log: total 411076
2025-10-10 09:31:54 (21304): Guest Log: -rwxrwxrwx. 1 root root 220978829 Oct 10 05:27 ATLAS.root_0
2025-10-10 09:31:54 (21304): Guest Log: -rwxrwxrwx. 1 root root 198173053 Oct 10  2025 HITS.pool.root.1
2025-10-10 09:31:54 (21304): Guest Log: -rwxrwxrwx. 1 root root      8728 Oct 10 05:27 init_data.xml
2025-10-10 09:31:54 (21304): Guest Log: -rwxrwxrwx. 1 root root    565609 Oct  3 17:09 input.tar.gz
2025-10-10 09:31:54 (21304): Guest Log: -rwxrwxrwx. 1 root root   1187840 Oct 10  2025 result.tar.gz
2025-10-10 09:31:54 (21304): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  3 17:09 start_atlas.sh
2025-10-10 09:31:54 (21304): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 09:31:54 (21304): VM Completion File Detected.
2025-10-10 09:31:54 (21304): Powering off VM.
2025-10-10 09:31:55 (21304): Successfully stopped VM.
2025-10-10 09:31:55 (21304): Deregistering VM. (boinc_6df36e18fc6bac0b, slot#6)
2025-10-10 09:31:55 (21304): Removing network bandwidth throttle group from VM.
2025-10-10 09:31:56 (21304): Removing VM from VirtualBox.
2025-10-10 09:32:01 (21304): called boinc_finish(0)

</stderr_txt>
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