Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 13:08:37 (13348): vboxwrapper version 26210
2025-10-10 13:08:37 (13348): BOINC client version: 8.2.4
2025-10-10 13:08:38 (13348): Detected: VirtualBox VboxManage Interface (Version: 7.1.0)
2025-10-10 13:08:39 (13348): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 13:08:39 (13348): Create VM. (boinc_4c5fcc6f5b7a15f7, slot#6)
2025-10-10 13:08:40 (13348): Setting Memory Size for VM. (4700MB)
2025-10-10 13:08:40 (13348): Setting CPU Count for VM. (7)
2025-10-10 13:08:40 (13348): Setting Chipset Options for VM.
2025-10-10 13:08:40 (13348): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 13:08:41 (13348): Setting Boot Options for VM.
2025-10-10 13:08:41 (13348): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 13:08:42 (13348): Enabling VM Network Access.
2025-10-10 13:08:42 (13348): Disabling USB Support for VM.
2025-10-10 13:08:42 (13348): Disabling COM Port Support for VM.
2025-10-10 13:08:42 (13348): Disabling LPT Port Support for VM.
2025-10-10 13:08:43 (13348): Disabling Audio Support for VM.
2025-10-10 13:08:43 (13348): Disabling Clipboard Support for VM.
2025-10-10 13:08:43 (13348): Disabling Drag and Drop Support for VM.
2025-10-10 13:08:43 (13348): Adding storage controller(s) to VM.
2025-10-10 13:08:44 (13348): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 13:08:46 (13348): Adding VirtualBox Guest Additions to VM.
2025-10-10 13:08:46 (13348): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 13:08:46 (13348): forwarding host port 59620 to guest port 80
2025-10-10 13:08:47 (13348): Enabling remote desktop for VM.
2025-10-10 13:08:47 (13348): Required extension pack not installed, remote desktop not enabled.
2025-10-10 13:08:47 (13348): Enabling shared directory for VM.
2025-10-10 13:08:48 (13348): Starting VM using VBoxManage interface. (boinc_4c5fcc6f5b7a15f7, slot#6)
2025-10-10 13:08:54 (13348): Successfully started VM. (PID = '20280')
2025-10-10 13:08:54 (13348): Reporting VM Process ID to BOINC.
2025-10-10 13:08:54 (13348): Guest Log: BIOS: VirtualBox 7.1.0
2025-10-10 13:08:54 (13348): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 13:08:54 (13348): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 13:08:54 (13348): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 13:08:54 (13348): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 13:08:54 (13348): Detected: Web Application Enabled (http://localhost:59620)
2025-10-10 13:08:54 (13348): Preference change detected
2025-10-10 13:08:54 (13348): Setting CPU throttle for VM. (90%)
2025-10-10 13:08:54 (13348): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 13:08:56 (13348): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 13:08:56 (13348): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 13:08:59 (13348): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 13:08:59 (13348): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 13:08:59 (13348): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 13:09:06 (13348): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 13:09:06 (13348): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 13:09:11 (13348): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.000088 main     Log opened 2025-10-10T13:09:10.092789000Z
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.000150 main     OS Product: Linux
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.000177 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.000195 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.000213 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.000214 main     Process ID: 1363
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.000214 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 13:09:11 (13348): Guest Log: 00:00:00.001100 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 13:09:11 (13348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 13:09:12 (13348): Guest Log: [INFO] Mounting shared directory
2025-10-10 13:09:12 (13348): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 13:09:21 (13348): Guest Log: 00:00:10.005740 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 989 368 000ns (GuestNow=1 760 094 561 105 486 000 ns GuestLast=1 760 101 750 094 854 000 ns fSetTimeLastLoop=true )
2025-10-10 13:09:47 (13348): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 13:09:47 (13348): Guest Log: [INFO] Detected branch: prod
2025-10-10 13:09:49 (13348): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 13:09:49 (13348): Guest Log: Copying input files
2025-10-10 13:09:50 (13348): Guest Log: Copied input files into RunAtlas.
2025-10-10 13:09:50 (13348): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 13:09:50 (13348): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 13:09:50 (13348): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 13:09:50 (13348): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 13:10:06 (13348): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 13:10:08 (13348): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 13:10:08 (13348): Guest Log: 2.6.3.0 1648 0 32160 151543 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 13:10:09 (13348): Guest Log: copied the webapp to /var/www
2025-10-10 13:10:09 (13348): Guest Log: ATHENA_PROC_NUMBER=7
2025-10-10 13:10:09 (13348): Guest Log: ATHENA_CORE_NUMBER=7
2025-10-10 13:10:11 (13348): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 13:10:11 (13348): Guest Log:  *** Starting ATLAS job. (PandaID=6828225759 taskID=46376994) ***
2025-10-10 14:11:53 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:12:13 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:13:03 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:13:23 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:14:14 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:14:34 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:22:56 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:23:16 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:23:47 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:24:07 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:24:30 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:24:51 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:26:32 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:26:52 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:42:52 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:43:13 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:49:43 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:50:03 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:50:43 (13348): VM state change detected. (old = 'running', new = 'paused')
2025-10-10 14:51:03 (13348): VM state change detected. (old = 'paused', new = 'running')
2025-10-10 14:52:30 (13348): Status Report: Elapsed Time: '6000.000000'
2025-10-10 14:52:30 (13348): Status Report: CPU Time: '18512.203125'
2025-10-10 15:10:33 (13348): Guest Log:  *** Job finished ***
2025-10-10 15:10:33 (13348): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:06:51,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:06:51,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:06,491 | INFO     | [monitor] cgroup control has ended
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:08,655 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139867033114432)>', '<ExcThread(monitor, started 139866574661376)>']
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:09,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:09,243 | INFO     | [monitor] control thread has ended
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,661 | INFO     | all workflow threads have been joined
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,661 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,662 | INFO     | traces error code: 0
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,663 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,753 [wrapper] ==== pilot stdout END ====
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,759 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,763 [wrapper] pilotpid: 6195
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:13,768 [wrapper] Pilot exit status: 0
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:14,795 [wrapper] pandaids: 6828225759
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:14,873 [wrapper] cleanup supervisor_pilot  3607 6196
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:14,878 [wrapper] Test setup, not cleaning
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:14,885 [wrapper] apfmon messages muted
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:14,891 [wrapper] ==== wrapper stdout END ====
2025-10-10 15:10:33 (13348): Guest Log: 2025-10-10 13:07:14,896 [wrapper] ==== wrapper stderr END ====
2025-10-10 15:10:33 (13348): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 15:10:33 (13348): Guest Log:     "exeErrorCode": 0,
2025-10-10 15:10:33 (13348): Guest Log:     "exeErrorDiag": "",
2025-10-10 15:10:33 (13348): Guest Log:     "pilotErrorCode": 0,
2025-10-10 15:10:33 (13348): Guest Log:     "pilotErrorDiag": "",
2025-10-10 15:10:33 (13348): Guest Log:  *** Listing of results directory ***
2025-10-10 15:10:33 (13348): Guest Log: total 199528
2025-10-10 15:10:33 (13348): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  3 08:53 pilot3.tar.gz
2025-10-10 15:10:33 (13348): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  3 09:15 queuedata.json
2025-10-10 15:10:33 (13348): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  3 09:16 runpilot2-wrapper.sh
2025-10-10 15:10:33 (13348): Guest Log: -rwxr-xr-x. 1 atlas atlas      8728 Oct 10 11:09 init_data.xml
2025-10-10 15:10:33 (13348): Guest Log: -rwxr-xr-x. 1 atlas atlas    565604 Oct 10 11:09 input.tar.gz
2025-10-10 15:10:33 (13348): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 11:09 start_atlas.sh
2025-10-10 15:10:33 (13348): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 11:09 EVNT.46376992._000564.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 15:10:33 (13348): Guest Log: -rw-r--r--. 1 atlas atlas      2558 Oct 10 11:10 pandaJob.out
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 11:22 agis_ddmendpoints.agis.ALL.json
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas    975528 Oct 10 11:23 agis_schedconf.cvmfs.json
2025-10-10 15:10:33 (13348): Guest Log: drwx------. 4 atlas atlas      4096 Oct 10 11:23 pilot3
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas 198200543 Oct 10 13:05 HITS.46376994._015749.pool.root.1
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 10 13:06 memory_monitor_summary.json
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas    311736 Oct 10 13:06 log.46376994._015749.job.log.tgz.1
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 13:06 pilot_heartbeat.json
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas      7798 Oct 10 13:06 heartbeat.json
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 10 13:07 pilotlog.txt
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas    832167 Oct 10 13:07 log.46376994._015749.job.log.1
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 13:07 output.list
2025-10-10 15:10:33 (13348): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 13:07 runtime_log
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas   1167360 Oct 10 13:07 result.tar.gz
2025-10-10 15:10:33 (13348): Guest Log: -rw-r--r--. 1 atlas atlas      8626 Oct 10 13:07 runtime_log.err
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas       651 Oct 10 13:07 pqqLDmP5qO8n9Rq4apOajLDm4fhM0noT9bVof3QYDmQCBMDmASBy8m.diag
2025-10-10 15:10:33 (13348): Guest Log: Looking for outputfile HITS.46376994._015749.pool.root.1
2025-10-10 15:10:33 (13348): Guest Log: HITS file was successfully produced
2025-10-10 15:10:33 (13348): Guest Log: -rw-------. 1 atlas atlas 198200543 Oct 10 13:05 /home/atlas/RunAtlas/HITS.46376994._015749.pool.root.1
2025-10-10 15:10:34 (13348): Guest Log: Successfully finished the ATLAS job!
2025-10-10 15:10:34 (13348): Guest Log: Copying the results back to the shared directory!
2025-10-10 15:10:34 (13348): Guest Log:  *** Contents of shared directory: ***
2025-10-10 15:10:34 (13348): Guest Log: total 414472
2025-10-10 15:10:34 (13348): Guest Log: -rwxrwxrwx. 1 root root 224451574 Oct 10 11:08 ATLAS.root_0
2025-10-10 15:10:34 (13348): Guest Log: -rwxrwxrwx. 1 root root 198200543 Oct 10  2025 HITS.pool.root.1
2025-10-10 15:10:34 (13348): Guest Log: -rwxrwxrwx. 1 root root      8728 Oct 10 11:08 init_data.xml
2025-10-10 15:10:34 (13348): Guest Log: -rwxrwxrwx. 1 root root    565604 Oct  3 17:12 input.tar.gz
2025-10-10 15:10:34 (13348): Guest Log: -rwxrwxrwx. 1 root root   1167360 Oct 10  2025 result.tar.gz
2025-10-10 15:10:34 (13348): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  3 17:12 start_atlas.sh
2025-10-10 15:10:34 (13348): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 15:10:34 (13348): VM Completion File Detected.
2025-10-10 15:10:34 (13348): Powering off VM.
2025-10-10 15:10:35 (13348): Successfully stopped VM.
2025-10-10 15:10:35 (13348): Deregistering VM. (boinc_4c5fcc6f5b7a15f7, slot#6)
2025-10-10 15:10:35 (13348): Removing network bandwidth throttle group from VM.
2025-10-10 15:10:35 (13348): Removing VM from VirtualBox.
2025-10-10 15:10:41 (13348): called boinc_finish(0)

</stderr_txt>
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