Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:20:29 (135700): wrapper (7.7.26015): starting
22:20:29 (135700): wrapper: running run_atlas (--nthreads 12)
[2025-10-02 22:20:29] Arguments: --nthreads 12
[2025-10-02 22:20:29] Threads: 12
[2025-10-02 22:20:29] Checking for CVMFS
[2025-10-02 22:20:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-02 22:20:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-02 22:20:30] Running cvmfs_config stat atlas.cern.ch
[2025-10-02 22:20:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-02 22:20:31] 2.11.5.0 2127 16531 209776 151281 3 226 33933646 45568001 20450 130560 0 106579355 99.820 54485754 27198 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-02 22:20:31] CVMFS is ok
[2025-10-02 22:20:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-02 22:20:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-02 22:20:31] Further information can be found at the LHC@home message board.
[2025-10-02 22:20:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-02 22:20:31] Checking for apptainer binary...
[2025-10-02 22:20:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-02 22:20:31] Running /usr/bin/apptainer --version
[2025-10-02 22:20:32] apptainer version 1.4.1-1.el9
[2025-10-02 22:20:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-02 22:20:32] wns0041.triumf.lcg
[2025-10-02 22:20:32] apptainer works
[2025-10-02 22:20:32] Set ATHENA_PROC_NUMBER=12
[2025-10-02 22:20:32] Set ATHENA_CORE_NUMBER=12
[2025-10-02 22:20:32] Starting ATLAS job with PandaID=6827820765
[2025-10-02 22:20:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-02 22:26:32]  *** The last 200 lines of the pilot log: ***
[2025-10-02 22:26:32] 2025-10-03 05:25:58,829 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-02 22:26:32] 2025-10-03 05:25:58,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-02 22:26:32] 2025-10-03 05:25:58,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-02 22:26:32] 2025-10-03 05:25:58,850 | WARNING  | wrong length of table data, x=[1759468977.0], y=[1918.0] (must be same and length>=4)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,850 | INFO     | could have reported an average CPU frequency of 2074 MHz (4 samples)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | ..............................
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . Timing measurements:
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . get job = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . initial setup = 4 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . payload setup = 30 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . stage-in = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . payload execution = 63 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | . stage-out = 1 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | . log creation = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | ..............................
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-02 22:26:32] 2025-10-03 05:25:58,853 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6827820765/pilotlog.txt
[2025-10-02 22:26:32] 2025-10-03 05:25:58,991 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-02 22:26:32] - Log from pilotlog.txt -
[2025-10-02 22:26:32] 2025-10-03 05:25:58,828 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6827820765/memory_monitor_summary.json (trf name=prmon)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,829 | INFO     | extracted standard info from prmon json
[2025-10-02 22:26:32] 2025-10-03 05:25:58,829 | INFO     | extracted standard memory fields from prmon json
[2025-10-02 22:26:32] 2025-10-03 05:25:58,829 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-02 22:26:32] 2025-10-03 05:25:58,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-02 22:26:32] 2025-10-03 05:25:58,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-02 22:26:32] 2025-10-03 05:25:58,850 | WARNING  | wrong length of table data, x=[1759468977.0], y=[1918.0] (must be same and length>=4)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,850 | INFO     | could have reported an average CPU frequency of 2074 MHz (4 samples)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | ..............................
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . Timing measurements:
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . get job = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . initial setup = 4 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . payload setup = 30 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . stage-in = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . payload execution = 63 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | . stage-out = 1 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | . log creation = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | ..............................
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-02 22:26:32] 2025-10-03 05:25:58,853 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6827820765/pilotlog.txt
[2025-10-02 22:26:32] 2025-10-03 05:25:58,994 | WARNING  | 
[2025-10-02 22:26:32] [begin log extracts]
[2025-10-02 22:26:32] - Log from pilotlog.txt -
[2025-10-02 22:26:32] 2025-10-03 05:25:58,828 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6827820765/memory_monitor_summary.json (trf name=prmon)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,829 | INFO     | extracted standard info from prmon json
[2025-10-02 22:26:32] 2025-10-03 05:25:58,829 | INFO     | extracted standard memory fields from prmon json
[2025-10-02 22:26:32] 2025-10-03 05:25:58,829 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-02 22:26:32] 2025-10-03 05:25:58,830 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-02 22:26:32] 2025-10-03 05:25:58,830 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-02 22:26:32] 2025-10-03 05:25:58,850 | WARNING  | wrong length of table data, x=[1759468977.0], y=[1918.0] (must be same and length>=4)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,850 | INFO     | could have reported an average CPU frequency of 2074 MHz (4 samples)
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | ..............................
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . Timing measurements:
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . get job = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . initial setup = 4 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . payload setup = 30 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . stage-in = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,851 | INFO     | . payload execution = 63 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | . stage-out = 1 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | . log creation = 0 s
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | ..............................
[2025-10-02 22:26:32] 2025-10-03 05:25:58,852 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-02 22:26:32] 2025-10-03 05:25:58,853 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6827820765/pilotlog.txt
[2025-10-02 22:26:32] [end log extracts]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,008 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-02 22:26:32] 2025-10-03 05:25:59,010 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-02 22:26:32] 2025-10-03 05:25:59,382 | INFO     | 
[2025-10-02 22:26:32] 2025-10-03 05:25:59,382 | INFO     | job summary report
[2025-10-02 22:26:32] 2025-10-03 05:25:59,382 | INFO     | --------------------------------------------------
[2025-10-02 22:26:32] 2025-10-03 05:25:59,382 | INFO     | PanDA job id: 6827820765
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | task id: 46376905
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-02 22:23:22,387 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | pilot state: failed 
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | transexitcode: 65
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | exeerrorcode: 65
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | exitcode: 65
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | cpuconsumptiontime: 25 s
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | nevents: 0
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | neventsw: 0
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | pid: 148060
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | pgrp: 148060
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | corecount: 12
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | event service: False
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | sizes: {0: 2348813, 1: 2348813, 12: 2348841, 20: 2349131, 23: 2349159, 98: 2372459, 101: 2376751, 103: 2376779, 246: 2376945}
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | --------------------------------------------------
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | 
[2025-10-02 22:26:32] 2025-10-03 05:25:59,383 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-02 22:26:32] 2025-10-03 05:25:59,457 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,466 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,467 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,467 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,467 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,467 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,467 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,467 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,467 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,468 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,468 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,468 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,468 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,468 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,468 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,468 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,469 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,469 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-02 22:26:32] 2025-10-03 05:25:59,483 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,483 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-02 22:26:32] 2025-10-03 05:25:59,484 | INFO     | job 6827820765 has completed (purged errors)
[2025-10-02 22:26:32] 2025-10-03 05:25:59,484 | INFO     | overall cleanup function is called
[2025-10-02 22:26:32] 2025-10-03 05:26:00,492 | INFO     | --- collectZombieJob: --- 10, [148060]
[2025-10-02 22:26:32] 2025-10-03 05:26:00,492 | INFO     | zombie collector waiting for pid 148060
[2025-10-02 22:26:32] 2025-10-03 05:26:00,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-02 22:26:32] 2025-10-03 05:26:00,493 | INFO     | collected zombie processes
[2025-10-02 22:26:32] 2025-10-03 05:26:00,493 | INFO     | will attempt to kill all subprocesses of pid=148060
[2025-10-02 22:26:32] 2025-10-03 05:26:01,746 | INFO     | process IDs to be killed: [148060] (in reverse order)
[2025-10-02 22:26:32] 2025-10-03 05:26:01,983 | WARNING  | found no corresponding commands to process id(s)
[2025-10-02 22:26:32] 2025-10-03 05:26:01,984 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-02 22:26:32] 2025-10-03 05:26:01,999 | INFO     | did not find any defunct processes belonging to 148060
[2025-10-02 22:26:32] 2025-10-03 05:26:02,040 | INFO     | did not find any defunct processes belonging to 148060
[2025-10-02 22:26:32] 2025-10-03 05:26:02,041 | INFO     | ready for new job
[2025-10-02 22:26:32] 2025-10-03 05:26:02,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-02 22:26:32] 2025-10-03 05:26:02,042 | INFO     | ***************************************
[2025-10-02 22:26:32] 2025-10-03 05:26:02,042 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-02 22:26:32] 2025-10-03 05:26:02,042 | INFO     | ***************************************
[2025-10-02 22:26:32] 2025-10-03 05:26:02,042 | INFO     | 
[2025-10-02 22:26:32] 2025-10-03 05:26:02,060 | INFO     | architecture information:
[2025-10-02 22:26:32] 2025-10-03 05:26:02,060 | INFO     | executing command: cat /etc/os-release
[2025-10-02 22:26:32] 2025-10-03 05:26:02,216 | INFO     | cat /etc/os-release:
[2025-10-02 22:26:32] NAME="CentOS Linux"
[2025-10-02 22:26:32] VERSION="7 (Core)"
[2025-10-02 22:26:32] ID="centos"
[2025-10-02 22:26:32] ID_LIKE="rhel fedora"
[2025-10-02 22:26:32] VERSION_ID="7"
[2025-10-02 22:26:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-02 22:26:32] ANSI_COLOR="0;31"
[2025-10-02 22:26:32] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-02 22:26:32] HOME_URL="https://www.centos.org/"
[2025-10-02 22:26:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-02 22:26:32] 
[2025-10-02 22:26:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-02 22:26:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-02 22:26:32] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-02 22:26:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-02 22:26:32] 
[2025-10-02 22:26:32] 2025-10-03 05:26:02,216 | INFO     | ***************************************
[2025-10-02 22:26:32] 2025-10-03 05:26:02,720 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-02 22:26:32] 2025-10-03 05:26:02,788 | INFO     | sufficient remaining disk space (1924210360320 B)
[2025-10-02 22:26:32] 2025-10-03 05:26:02,788 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-02 22:26:32] 2025-10-03 05:26:02,789 | INFO     | current server update state: UPDATING_FINAL
[2025-10-02 22:26:32] 2025-10-03 05:26:02,789 | INFO     | update_server=False
[2025-10-02 22:26:32] 2025-10-03 05:26:02,789 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-02 22:26:32] 2025-10-03 05:26:02,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-02 22:26:32] 2025-10-03 05:26:02,789 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-02 22:26:32] 2025-10-03 05:26:02,808 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-02 22:26:32] 2025-10-03 05:26:02,808 | INFO     | aborting loop
[2025-10-02 22:26:32] 2025-10-03 05:26:03,214 | INFO     | all data control threads have been joined
[2025-10-02 22:26:32] 2025-10-03 05:26:03,499 | INFO     | all payload control threads have been joined
[2025-10-02 22:26:32] 2025-10-03 05:26:03,795 | INFO     | [job] retrieve thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:03,803 | INFO     | [payload] validate_post thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:03,814 | INFO     | [job] job monitor thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,107 | INFO     | [payload] failed_post thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,146 | INFO     | all job control threads have been joined
[2025-10-02 22:26:32] 2025-10-03 05:26:04,220 | INFO     | [data] control thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,306 | INFO     | [job] validate thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,430 | INFO     | [data] copytool_in thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,455 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-02 22:26:32] 2025-10-03 05:26:04,505 | INFO     | [payload] control thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,703 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,796 | INFO     | [data] copytool_out thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,955 | INFO     | [job] create_data_payload thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,960 | INFO     | [payload] execute_payloads thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:04,961 | INFO     | [payload] validate_pre thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:05,152 | INFO     | [job] control thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:05,461 | INFO     | [job] queue monitor thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:06,802 | INFO     | [data] queue_monitor thread has finished
[2025-10-02 22:26:32] 2025-10-03 05:26:17,086 | INFO     | [monitor] cgroup control has ended
[2025-10-02 22:26:32] 2025-10-03 05:26:18,911 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140137173755712)>', '<ExcThread(monitor, started 140136780125952)>']
[2025-10-02 22:26:32] 2025-10-03 05:26:23,938 | INFO     | all workflow threads have been joined
[2025-10-02 22:26:32] 2025-10-03 05:26:23,938 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-02 22:26:32] 2025-10-03 05:26:23,938 | INFO     | traces error code: 0
[2025-10-02 22:26:32] 2025-10-03 05:26:23,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-02 22:26:32] 2025-10-03 05:26:31,356 | INFO     | PID=141279 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-02 22:26:32] 2025-10-03 05:26:31,356 | INFO     | .. there are 35 such processes running
[2025-10-02 22:26:32] 2025-10-03 05:26:31,357 | INFO     | found 0 job(s) in 20 queues
[2025-10-02 22:26:32] 2025-10-03 05:26:31,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-02 22:26:32] 2025-10-03 05:26:31,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-02 22:26:32] 2025-10-03 05:26:31,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-02 22:26:32] 2025-10-03 05:26:31,357 | INFO     | [monitor] control thread has ended
[2025-10-02 22:26:32] 2025-10-03 05:26:31,565 [wrapper] ==== pilot stdout END ====
[2025-10-02 22:26:32] 2025-10-03 05:26:31,569 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-02 22:26:32] 2025-10-03 05:26:31,574 [wrapper] pilotpid: 141279
[2025-10-02 22:26:32] 2025-10-03 05:26:31,579 [wrapper] Pilot exit status: 0
[2025-10-02 22:26:32] 2025-10-03 05:26:31,603 [wrapper] pandaids: 6827820765
[2025-10-02 22:26:32] 2025-10-03 05:26:31,720 [wrapper] cleanup supervisor_pilot  141285 141280
[2025-10-02 22:26:32] 2025-10-03 05:26:31,725 [wrapper] Test setup, not cleaning
[2025-10-02 22:26:32] 2025-10-03 05:26:31,730 [wrapper] apfmon messages muted
[2025-10-02 22:26:32] 2025-10-03 05:26:31,734 [wrapper] ==== wrapper stdout END ====
[2025-10-02 22:26:32] 2025-10-03 05:26:31,739 [wrapper] ==== wrapper stderr END ====
[2025-10-02 22:26:32]  *** Error codes and diagnostics ***
[2025-10-02 22:26:32]     "exeErrorCode": 65,
[2025-10-02 22:26:32]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-02 22:26:32]     "pilotErrorCode": 1305,
[2025-10-02 22:26:32]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-02 22:26:32]  *** Listing of results directory ***
[2025-10-02 22:26:32] total 212844
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc    552446 Oct  2 20:15 pilot3.tar.gz
[2025-10-02 22:26:32] -rwx------. 1 boinc boinc     36292 Oct  2 20:24 runpilot2-wrapper.sh
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc      5112 Oct  2 20:24 queuedata.json
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc       100 Oct  2 22:20 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-02 22:26:32] -rwxr-xr-x. 1 boinc boinc      7986 Oct  2 22:20 run_atlas
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc       105 Oct  2 22:20 job.xml
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc      6594 Oct  2 22:20 init_data.xml
[2025-10-02 22:26:32] -rw-r--r--. 2 boinc boinc 213838004 Oct  2 22:20 EVNT.46376901._001196.pool.root.1
[2025-10-02 22:26:32] -rw-r--r--. 2 boinc boinc     15120 Oct  2 22:20 start_atlas.sh
[2025-10-02 22:26:32] drwxrwx--x. 2 boinc boinc      4096 Oct  2 22:20 shared
[2025-10-02 22:26:32] -rw-r--r--. 2 boinc boinc    565598 Oct  2 22:20 input.tar.gz
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc         0 Oct  2 22:20 boinc_lockfile
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc      2519 Oct  2 22:20 pandaJob.out
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc    975955 Oct  2 22:21 agis_schedconf.cvmfs.json
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc   1560401 Oct  2 22:21 agis_ddmendpoints.agis.ALL.json
[2025-10-02 22:26:32] drwx------. 4 boinc boinc      4096 Oct  2 22:21 pilot3
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc       960 Oct  2 22:23 memory_monitor_summary.json
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc     21607 Oct  2 22:23 log.46376905._035730.job.log.tgz.1
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc      8385 Oct  2 22:25 heartbeat.json
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc       525 Oct  2 22:26 boinc_task_state.xml
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc      8192 Oct  2 22:26 boinc_mmap_file
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc        23 Oct  2 22:26 wrapper_checkpoint.txt
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc        95 Oct  2 22:26 pilot_heartbeat.json
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc       822 Oct  2 22:26 pilotlog.txt
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc     94394 Oct  2 22:26 log.46376905._035730.job.log.1
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc       188 Oct  2 22:26 output.list
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc       620 Oct  2 22:26 runtime_log
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc    133120 Oct  2 22:26 result.tar.gz
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc       644 Oct  2 22:26 W3yKDmEalO8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVcGNDmQJPIYm.diag
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc      8528 Oct  2 22:26 runtime_log.err
[2025-10-02 22:26:32] -rw-r--r--. 1 boinc boinc     21792 Oct  2 22:26 stderr.txt
[2025-10-02 22:26:32] No HITS result produced
[2025-10-02 22:26:32]  *** Contents of shared directory: ***
[2025-10-02 22:26:32] total 209532
[2025-10-02 22:26:32] -rw-r--r--. 2 boinc boinc 213838004 Oct  2 22:20 ATLAS.root_0
[2025-10-02 22:26:32] -rw-r--r--. 2 boinc boinc     15120 Oct  2 22:20 start_atlas.sh
[2025-10-02 22:26:32] -rw-r--r--. 2 boinc boinc    565598 Oct  2 22:20 input.tar.gz
[2025-10-02 22:26:32] -rw-------. 1 boinc boinc    133120 Oct  2 22:26 result.tar.gz
22:26:34 (135700): run_atlas exited; CPU time 34.169466
22:26:34 (135700): called boinc_finish(0)

</stderr_txt>
]]>

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