Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-05 20:15:35 (8984): vboxwrapper version 26210
2025-10-05 20:15:35 (8984): BOINC client version: 7.20.2
2025-10-05 20:15:36 (8984): Detected: VirtualBox VboxManage Interface (Version: 6.1.36)
2025-10-05 20:15:36 (8984): Successfully copied 'init_data.xml' to the shared directory.
2025-10-05 20:15:37 (8984): Create VM. (boinc_e6c78a9ae8087276, slot#0)
2025-10-05 20:15:37 (8984): Setting Memory Size for VM. (4800MB)
2025-10-05 20:15:37 (8984): Setting CPU Count for VM. (8)
2025-10-05 20:15:38 (8984): Setting Chipset Options for VM.
2025-10-05 20:15:38 (8984): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-05 20:15:38 (8984): Setting Boot Options for VM.
2025-10-05 20:15:39 (8984): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-05 20:15:39 (8984): Enabling VM Network Access.
2025-10-05 20:15:39 (8984): Disabling USB Support for VM.
2025-10-05 20:15:40 (8984): Disabling COM Port Support for VM.
2025-10-05 20:15:40 (8984): Disabling LPT Port Support for VM.
2025-10-05 20:15:40 (8984): Disabling Audio Support for VM.
2025-10-05 20:15:40 (8984): Disabling Clipboard Support for VM.
2025-10-05 20:15:41 (8984): Disabling Drag and Drop Support for VM.
2025-10-05 20:15:41 (8984): Adding storage controller(s) to VM.
2025-10-05 20:15:41 (8984): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-05 20:15:42 (8984): Adding VirtualBox Guest Additions to VM.
2025-10-05 20:15:43 (8984): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-05 20:15:43 (8984): forwarding host port 64614 to guest port 80
2025-10-05 20:15:43 (8984): Enabling remote desktop for VM.
2025-10-05 20:15:43 (8984): Required extension pack not installed, remote desktop not enabled.
2025-10-05 20:15:43 (8984): Enabling shared directory for VM.
2025-10-05 20:15:44 (8984): Starting VM using VBoxManage interface. (boinc_e6c78a9ae8087276, slot#0)
2025-10-05 20:15:50 (8984): Successfully started VM. (PID = '10908')
2025-10-05 20:15:50 (8984): Reporting VM Process ID to BOINC.
2025-10-05 20:15:50 (8984): Guest Log: BIOS: VirtualBox 6.1.36
2025-10-05 20:15:50 (8984): Guest Log: CPUID EDX: 0x178bfbff
2025-10-05 20:15:50 (8984): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-05 20:15:50 (8984): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-05 20:15:50 (8984): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-05 20:15:50 (8984): Detected: Web Application Enabled (http://localhost:64614)
2025-10-05 20:15:50 (8984): Preference change detected
2025-10-05 20:15:50 (8984): Setting CPU throttle for VM. (100%)
2025-10-05 20:15:50 (8984): Setting network throttle for VM. (500000KB)
2025-10-05 20:15:50 (8984): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-05 20:15:52 (8984): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-05 20:15:52 (8984): Guest Log: BIOS: Booting from Hard Disk...
2025-10-05 20:15:55 (8984): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-05 20:15:55 (8984): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-05 20:15:55 (8984): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-05 20:16:00 (8984): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-05 20:16:00 (8984): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-05 20:16:06 (8984): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.000161 main     Log opened 2025-10-05T20:16:04.651197000Z
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.000265 main     OS Product: Linux
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.000297 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.000327 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.000356 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.000357 main     Process ID: 1368
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.000358 main     Package type: LINUX_64BITS_GENERIC
2025-10-05 20:16:06 (8984): Guest Log: 00:00:00.001230 main     5.2.32 r132073 started. Verbose level = 0
2025-10-05 20:16:06 (8984): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-05 20:16:06 (8984): Guest Log: [INFO] Mounting shared directory
2025-10-05 20:16:06 (8984): Guest Log: [INFO] Checking for init_data.xml
2025-10-05 20:16:11 (8984): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-05 20:16:11 (8984): Guest Log: [INFO] Detected branch: prod
2025-10-05 20:16:11 (8984): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-05 20:16:11 (8984): Guest Log: Copying input files
2025-10-05 20:16:12 (8984): Guest Log: Copied input files into RunAtlas.
2025-10-05 20:16:12 (8984): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-05 20:16:12 (8984): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-05 20:16:12 (8984): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-05 20:16:12 (8984): Guest Log: Further information can be found at the LHC@home message board.
2025-10-05 20:16:16 (8984): Guest Log: 00:00:10.005548 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 210 834 934 000ns (GuestNow=1 759 720 575 489 234 000 ns GuestLast=1 759 695 364 654 300 000 ns fSetTimeLastLoop=true )
2025-10-05 20:17:12 (8984): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-05 20:17:12 (8984): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-05 20:17:12 (8984): Guest Log: 2.6.3.0 1646 1 30176 151385 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-05 20:17:13 (8984): Guest Log: copied the webapp to /var/www
2025-10-05 20:17:13 (8984): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-05 20:17:13 (8984): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-05 20:17:13 (8984): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-05 20:17:13 (8984): Guest Log:  *** Starting ATLAS job. (PandaID=6826416592 taskID=46373048) ***
2025-10-05 21:16:08 (8984): VM state change detected. (old = 'running', new = 'paused')
2025-10-05 21:31:23 (8984): VM state change detected. (old = 'paused', new = 'running')
2025-10-05 22:12:25 (8984): Status Report: Elapsed Time: '6000.000000'
2025-10-05 22:12:25 (8984): Status Report: CPU Time: '41805.250000'
2025-10-05 23:06:00 (8984): VM state change detected. (old = 'running', new = 'paused')
2025-10-06 00:50:54 (8984): VM state change detected. (old = 'paused', new = 'running')
2025-10-06 00:51:03 (8984): Guest Log: 02:34:51.904872 timesync vgsvcTimeSyncWorker: Radical host time change: 6 298 260 000 000ns (HostNow=1 759 737 054 416 000 000 ns HostLast=1 759 730 756 156 000 000 ns)
2025-10-06 00:51:13 (8984): Guest Log: 02:35:01.906558 timesync vgsvcTimeSyncWorker: Radical guest time change: 7 207 035 128 000ns (GuestNow=1 759 737 064 420 544 000 ns GuestLast=1 759 729 857 385 416 000 ns fSetTimeLastLoop=true )
2025-10-06 01:15:35 (8984): Guest Log:  *** Job finished ***
2025-10-06 01:15:35 (8984): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:14:35,762 | INFO     | [job] queue monitor thread has finished
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:14:38,907 | INFO     | [data] queue_monitor thread has finished
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:18,804 | INFO     | [monitor] cgroup control has ended
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:19,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725432178496)>', '<ExcThread(monitor, started 139724463265536)>']
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:19,949 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:19,949 | INFO     | [monitor] control thread has ended
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,543 | INFO     | all workflow threads have been joined
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,544 | INFO     | end of generic workflow (traces error code: 0)
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,544 | INFO     | traces error code: 0
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,639 [wrapper] ==== pilot stdout END ====
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,646 [wrapper] ==== wrapper stdout RESUME ====
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,653 [wrapper] pilotpid: 6090
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,663 [wrapper] Pilot exit status: 0
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,751 [wrapper] pandaids: 6826416592
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,800 [wrapper] cleanup supervisor_pilot 10871 6091
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,807 [wrapper] Test setup, not cleaning
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,814 [wrapper] apfmon messages muted
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,821 [wrapper] ==== wrapper stdout END ====
2025-10-06 01:15:35 (8984): Guest Log: 2025-10-06 08:15:24,828 [wrapper] ==== wrapper stderr END ====
2025-10-06 01:15:35 (8984): Guest Log:  *** Error codes and diagnostics ***
2025-10-06 01:15:35 (8984): Guest Log:     "exeErrorCode": 0,
2025-10-06 01:15:35 (8984): Guest Log:     "exeErrorDiag": "",
2025-10-06 01:15:35 (8984): Guest Log:     "pilotErrorCode": 0,
2025-10-06 01:15:35 (8984): Guest Log:     "pilotErrorDiag": "",
2025-10-06 01:15:35 (8984): Guest Log:  *** Listing of results directory ***
2025-10-06 01:15:35 (8984): Guest Log: total 204692
2025-10-06 01:15:35 (8984): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Oct  1 09:54 pilot3.tar.gz
2025-10-06 01:15:35 (8984): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct  1 09:56 queuedata.json
2025-10-06 01:15:35 (8984): Guest Log: -rwx------. 1 atlas atlas     36292 Oct  1 09:58 runpilot2-wrapper.sh
2025-10-06 01:15:35 (8984): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct  6 03:16 start_atlas.sh
2025-10-06 01:15:35 (8984): Guest Log: -rwxr-xr-x. 1 atlas atlas    565606 Oct  6 03:16 input.tar.gz
2025-10-06 01:15:35 (8984): Guest Log: -rwxr-xr-x. 1 atlas atlas      5963 Oct  6 03:16 init_data.xml
2025-10-06 01:15:35 (8984): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct  6 03:16 EVNT.46373045._002638.pool.root.1 -> /data/./ATLAS.root_0
2025-10-06 01:15:35 (8984): Guest Log: -rw-r--r--. 1 atlas atlas      2538 Oct  6 03:17 pandaJob.out
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas    974168 Oct  6 03:18 agis_schedconf.cvmfs.json
2025-10-06 01:15:35 (8984): Guest Log: drwx------. 4 atlas atlas      4096 Oct  6 03:18 pilot3
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas 202186871 Oct  6 08:13 HITS.46373048._080564.pool.root.1
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas      1029 Oct  6 08:14 memory_monitor_summary.json
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas   1560401 Oct  6 08:14 agis_ddmendpoints.agis.ALL.json
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas    411261 Oct  6 08:14 log.46373048._080564.job.log.tgz.1
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas        97 Oct  6 08:14 pilot_heartbeat.json
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas      7799 Oct  6 08:14 heartbeat.json
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas      4612 Oct  6 08:15 pilotlog.txt
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas   1390758 Oct  6 08:15 log.46373048._080564.job.log.1
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas       357 Oct  6 08:15 output.list
2025-10-06 01:15:35 (8984): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct  6 08:15 runtime_log
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas   1822720 Oct  6 08:15 result.tar.gz
2025-10-06 01:15:35 (8984): Guest Log: -rw-r--r--. 1 atlas atlas      8670 Oct  6 08:15 runtime_log.err
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas       669 Oct  6 08:15 o49NDmGm8N8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJiBNDmrfFWkn.diag
2025-10-06 01:15:35 (8984): Guest Log: Looking for outputfile HITS.46373048._080564.pool.root.1
2025-10-06 01:15:35 (8984): Guest Log: HITS file was successfully produced
2025-10-06 01:15:35 (8984): Guest Log: -rw-------. 1 atlas atlas 202186871 Oct  6 08:13 /home/atlas/RunAtlas/HITS.46373048._080564.pool.root.1
2025-10-06 01:15:36 (8984): Guest Log: Successfully finished the ATLAS job!
2025-10-06 01:15:36 (8984): Guest Log: Copying the results back to the shared directory!
2025-10-06 01:15:36 (8984): Guest Log:  *** Contents of shared directory: ***
2025-10-06 01:15:36 (8984): Guest Log: total 419588
2025-10-06 01:15:36 (8984): Guest Log: -rwxrwxrwx. 1 root root 225046770 Oct  6 03:15 ATLAS.root_0
2025-10-06 01:15:36 (8984): Guest Log: -rwxrwxrwx. 1 root root 202186871 Oct  6  2025 HITS.pool.root.1
2025-10-06 01:15:36 (8984): Guest Log: -rwxrwxrwx. 1 root root      5963 Oct  6 03:15 init_data.xml
2025-10-06 01:15:36 (8984): Guest Log: -rwxrwxrwx. 1 root root    565606 Oct  1 17:23 input.tar.gz
2025-10-06 01:15:36 (8984): Guest Log: -rwxrwxrwx. 1 root root   1822720 Oct  6  2025 result.tar.gz
2025-10-06 01:15:36 (8984): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct  1 17:23 start_atlas.sh
2025-10-06 01:15:36 (8984): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-06 01:15:36 (8984): VM Completion File Detected.
2025-10-06 01:15:36 (8984): Powering off VM.
2025-10-06 01:15:38 (8984): Successfully stopped VM.
2025-10-06 01:15:38 (8984): Deregistering VM. (boinc_e6c78a9ae8087276, slot#0)
2025-10-06 01:15:38 (8984): Removing network bandwidth throttle group from VM.
2025-10-06 01:15:38 (8984): Removing VM from VirtualBox.
2025-10-06 01:15:43 (8984): called boinc_finish(0)

</stderr_txt>
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