Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:17:59 (809397): wrapper (7.7.26015): starting
20:17:59 (809397): wrapper: running run_atlas (--nthreads 8)
[2025-09-30 20:17:59] Arguments: --nthreads 8
[2025-09-30 20:17:59] Threads: 8
[2025-09-30 20:17:59] Checking for CVMFS
[2025-09-30 20:18:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-09-30 20:18:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-09-30 20:18:00] Running cvmfs_config stat atlas.cern.ch
[2025-09-30 20:18:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-09-30 20:18:00] 2.11.3.0 4007 15101 287908 151195 3 1067 42259928 45568001 7578 130560 0 42583542 99.680 37589070 31726 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-09-30 20:18:00] CVMFS is ok
[2025-09-30 20:18:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-09-30 20:18:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-09-30 20:18:00] Further information can be found at the LHC@home message board.
[2025-09-30 20:18:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-09-30 20:18:00] Checking for apptainer binary...
[2025-09-30 20:18:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-09-30 20:18:00] Running /usr/bin/apptainer --version
[2025-09-30 20:18:00] apptainer version 1.4.1-1.el9
[2025-09-30 20:18:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-09-30 20:18:00] wns0017.triumf.lcg
[2025-09-30 20:18:00] apptainer works
[2025-09-30 20:18:00] Set ATHENA_PROC_NUMBER=8
[2025-09-30 20:18:00] Set ATHENA_CORE_NUMBER=8
[2025-09-30 20:18:00] Starting ATLAS job with PandaID=6826242485
[2025-09-30 20:18:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-09-30 20:21:19]  *** The last 200 lines of the pilot log: ***
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | found no stored workdir sizes
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | INFO     | will not add max space = 0 B to job metrics
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | WARNING  | wrong length of table data, x=[1759288712.0], y=[1366.0] (must be same and length>=4)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | ..............................
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | . Timing measurements:
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | . get job = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . initial setup = 2 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . payload setup = 4 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . stage-in = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . payload execution = 14 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . stage-out = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . log creation = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | ..............................
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6826242485/pilotlog.txt
[2025-09-30 20:21:19] 2025-10-01 03:20:47,230 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-09-30 20:21:19] - Log from pilotlog.txt -
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | INFO     | extracted standard memory fields from prmon json
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | found no stored workdir sizes
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | INFO     | will not add max space = 0 B to job metrics
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | WARNING  | wrong length of table data, x=[1759288712.0], y=[1366.0] (must be same and length>=4)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | ..............................
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | . Timing measurements:
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | . get job = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . initial setup = 2 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . payload setup = 4 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . stage-in = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . payload execution = 14 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . stage-out = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . log creation = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | ..............................
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6826242485/pilotlog.txt
[2025-09-30 20:21:19] 2025-10-01 03:20:47,231 | WARNING  | 
[2025-09-30 20:21:19] [begin log extracts]
[2025-09-30 20:21:19] - Log from pilotlog.txt -
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | INFO     | extracted standard memory fields from prmon json
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | WARNING  | found no stored workdir sizes
[2025-09-30 20:21:19] 2025-10-01 03:20:47,218 | INFO     | will not add max space = 0 B to job metrics
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | WARNING  | wrong length of table data, x=[1759288712.0], y=[1366.0] (must be same and length>=4)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | ..............................
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | . Timing measurements:
[2025-09-30 20:21:19] 2025-10-01 03:20:47,219 | INFO     | . get job = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . initial setup = 2 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . payload setup = 4 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . stage-in = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . payload execution = 14 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . stage-out = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | . log creation = 0 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | ..............................
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-09-30 20:21:19] 2025-10-01 03:20:47,220 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6826242485/pilotlog.txt
[2025-09-30 20:21:19] [end log extracts]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,231 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,232 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-09-30 20:21:19] 2025-10-01 03:20:47,303 | INFO     | 
[2025-09-30 20:21:19] 2025-10-01 03:20:47,303 | INFO     | job summary report
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | --------------------------------------------------
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | PanDA job id: 6826242485
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | task id: 46373048
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-09-30 20:18:39,788 CRITICAL Transform executor raised TransformValidationExceptio
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | status: LOG_TRANSFER = DONE 
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | pilot state: failed 
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | transexitcode: 65
[2025-09-30 20:21:19] 2025-10-01 03:20:47,304 | INFO     | exeerrorcode: 65
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | exitcode: 65
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | cpuconsumptiontime: 17 s
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | nevents: 0
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | neventsw: 0
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | pid: 819557
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | pgrp: 819557
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | corecount: 8
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | event service: False
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | sizes: {0: 2348723, 1: 2348865, 4: 2349127, 11: 2349155, 22: 2372250, 24: 2376698, 143: 2376836}
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | --------------------------------------------------
[2025-09-30 20:21:19] 2025-10-01 03:20:47,305 | INFO     | 
[2025-09-30 20:21:19] 2025-10-01 03:20:47,306 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-09-30 20:21:19] 2025-10-01 03:20:47,320 | INFO     | queue jobs had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,320 | INFO     | queue payloads had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue data_in had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue data_out had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,321 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,322 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,322 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,322 | INFO     | queue completed_jobids has 1 job(s)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,322 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,322 | INFO     | queue messages had 0 job(s) [purged]
[2025-09-30 20:21:19] 2025-10-01 03:20:47,322 | INFO     | job 6826242485 has completed (purged errors)
[2025-09-30 20:21:19] 2025-10-01 03:20:47,322 | INFO     | overall cleanup function is called
[2025-09-30 20:21:19] 2025-10-01 03:20:48,328 | INFO     | --- collectZombieJob: --- 10, [819557]
[2025-09-30 20:21:19] 2025-10-01 03:20:48,329 | INFO     | zombie collector waiting for pid 819557
[2025-09-30 20:21:19] 2025-10-01 03:20:48,329 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-09-30 20:21:19] 2025-10-01 03:20:48,329 | INFO     | collected zombie processes
[2025-09-30 20:21:19] 2025-10-01 03:20:48,329 | INFO     | will attempt to kill all subprocesses of pid=819557
[2025-09-30 20:21:19] 2025-10-01 03:20:48,474 | INFO     | process IDs to be killed: [819557] (in reverse order)
[2025-09-30 20:21:19] 2025-10-01 03:20:48,519 | WARNING  | found no corresponding commands to process id(s)
[2025-09-30 20:21:19] 2025-10-01 03:20:48,521 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-09-30 20:21:19] 2025-10-01 03:20:48,526 | INFO     | did not find any defunct processes belonging to 819557
[2025-09-30 20:21:19] 2025-10-01 03:20:48,531 | INFO     | did not find any defunct processes belonging to 819557
[2025-09-30 20:21:19] 2025-10-01 03:20:48,532 | INFO     | ready for new job
[2025-09-30 20:21:19] 2025-10-01 03:20:48,532 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-09-30 20:21:19] 2025-10-01 03:20:48,533 | INFO     | ***************************************
[2025-09-30 20:21:19] 2025-10-01 03:20:48,533 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-09-30 20:21:19] 2025-10-01 03:20:48,534 | INFO     | ***************************************
[2025-09-30 20:21:19] 2025-10-01 03:20:48,534 | INFO     | 
[2025-09-30 20:21:19] 2025-10-01 03:20:48,535 | INFO     | architecture information:
[2025-09-30 20:21:19] 2025-10-01 03:20:48,535 | INFO     | executing command: cat /etc/os-release
[2025-09-30 20:21:19] 2025-10-01 03:20:48,544 | INFO     | cat /etc/os-release:
[2025-09-30 20:21:19] NAME="CentOS Linux"
[2025-09-30 20:21:19] VERSION="7 (Core)"
[2025-09-30 20:21:19] ID="centos"
[2025-09-30 20:21:19] ID_LIKE="rhel fedora"
[2025-09-30 20:21:19] VERSION_ID="7"
[2025-09-30 20:21:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-09-30 20:21:19] ANSI_COLOR="0;31"
[2025-09-30 20:21:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-09-30 20:21:19] HOME_URL="https://www.centos.org/"
[2025-09-30 20:21:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-09-30 20:21:19] 
[2025-09-30 20:21:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-09-30 20:21:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-09-30 20:21:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-09-30 20:21:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-09-30 20:21:19] 
[2025-09-30 20:21:19] 2025-10-01 03:20:48,544 | INFO     | ***************************************
[2025-09-30 20:21:19] 2025-10-01 03:20:49,047 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-09-30 20:21:19] 2025-10-01 03:20:49,060 | INFO     | sufficient remaining disk space (1343673597952 B)
[2025-09-30 20:21:19] 2025-10-01 03:20:49,061 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-09-30 20:21:19] 2025-10-01 03:20:49,061 | INFO     | current server update state: UPDATING_FINAL
[2025-09-30 20:21:19] 2025-10-01 03:20:49,061 | INFO     | update_server=False
[2025-09-30 20:21:19] 2025-10-01 03:20:49,061 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-09-30 20:21:19] 2025-10-01 03:20:49,061 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-09-30 20:21:19] 2025-10-01 03:20:49,061 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-09-30 20:21:19] 2025-10-01 03:20:49,334 | INFO     | all job control threads have been joined
[2025-09-30 20:21:19] 2025-10-01 03:20:49,520 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-09-30 20:21:19] 2025-10-01 03:20:49,520 | INFO     | aborting loop
[2025-09-30 20:21:19] 2025-10-01 03:20:50,008 | INFO     | all data control threads have been joined
[2025-09-30 20:21:19] 2025-10-01 03:20:50,008 | INFO     | all payload control threads have been joined
[2025-09-30 20:21:19] 2025-10-01 03:20:50,066 | INFO     | [job] retrieve thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,067 | INFO     | [job] queue monitor thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,102 | INFO     | [payload] validate_post thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,118 | INFO     | [payload] validate_pre thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,171 | INFO     | [payload] run_realtimelog thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,338 | INFO     | [job] control thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,525 | INFO     | [job] job monitor thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,610 | INFO     | [payload] execute_payloads thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,782 | INFO     | [data] copytool_in thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:50,986 | INFO     | [payload] failed_post thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:51,010 | INFO     | [data] control thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:51,011 | INFO     | [payload] control thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:51,066 | INFO     | [data] copytool_out thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:51,284 | INFO     | [job] validate thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:51,305 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-09-30 20:21:19] 2025-10-01 03:20:51,478 | INFO     | [job] create_data_payload thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:20:55,312 | INFO     | [data] queue_monitor thread has finished
[2025-09-30 20:21:19] 2025-10-01 03:21:09,061 | INFO     | [monitor] cgroup control has ended
[2025-09-30 20:21:19] 2025-10-01 03:21:10,758 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140397411604288)>', '<ExcThread(monitor, started 140396508215040)>']
[2025-09-30 20:21:19] 2025-10-01 03:21:15,783 | INFO     | all workflow threads have been joined
[2025-09-30 20:21:19] 2025-10-01 03:21:15,783 | INFO     | end of generic workflow (traces error code: 0)
[2025-09-30 20:21:19] 2025-10-01 03:21:15,784 | INFO     | traces error code: 0
[2025-09-30 20:21:19] 2025-10-01 03:21:15,784 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-09-30 20:21:19] 2025-10-01 03:21:18,851 | INFO     | PID=813043 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-09-30 20:21:19] 2025-10-01 03:21:18,852 | INFO     | .. there are 12 such processes running
[2025-09-30 20:21:19] 2025-10-01 03:21:18,853 | INFO     | found 0 job(s) in 20 queues
[2025-09-30 20:21:19] 2025-10-01 03:21:18,853 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-09-30 20:21:19] 2025-10-01 03:21:18,853 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-09-30 20:21:19] 2025-10-01 03:21:18,853 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-09-30 20:21:19] 2025-10-01 03:21:18,854 | CRITICAL | thread 'MainThread' is not alive
[2025-09-30 20:21:19] 2025-10-01 03:21:18,854 | INFO     | [monitor] control thread has ended
[2025-09-30 20:21:19] 2025-10-01 03:21:18,986 [wrapper] ==== pilot stdout END ====
[2025-09-30 20:21:19] 2025-10-01 03:21:18,988 [wrapper] ==== wrapper stdout RESUME ====
[2025-09-30 20:21:19] 2025-10-01 03:21:18,991 [wrapper] pilotpid: 813043
[2025-09-30 20:21:19] 2025-10-01 03:21:18,993 [wrapper] Pilot exit status: 0
[2025-09-30 20:21:19] 2025-10-01 03:21:19,000 [wrapper] pandaids: 6826242485
[2025-09-30 20:21:19] 2025-10-01 03:21:19,028 [wrapper] cleanup supervisor_pilot  813049 813044
[2025-09-30 20:21:19] 2025-10-01 03:21:19,030 [wrapper] Test setup, not cleaning
[2025-09-30 20:21:19] 2025-10-01 03:21:19,033 [wrapper] apfmon messages muted
[2025-09-30 20:21:19] 2025-10-01 03:21:19,035 [wrapper] ==== wrapper stdout END ====
[2025-09-30 20:21:19] 2025-10-01 03:21:19,036 [wrapper] ==== wrapper stderr END ====
[2025-09-30 20:21:19]  *** Error codes and diagnostics ***
[2025-09-30 20:21:19]     "exeErrorCode": 65,
[2025-09-30 20:21:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-09-30 20:21:19]     "pilotErrorCode": 1305,
[2025-09-30 20:21:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-09-30 20:21:19]  *** Listing of results directory ***
[2025-09-30 20:21:19] total 220192
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc    552446 Sep 30 17:15 pilot3.tar.gz
[2025-09-30 20:21:19] -rwx------. 1 boinc boinc     36292 Sep 30 17:43 runpilot2-wrapper.sh
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc      5112 Sep 30 17:43 queuedata.json
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc       100 Sep 30 20:17 wrapper_26015_x86_64-pc-linux-gnu
[2025-09-30 20:21:19] -rwxr-xr-x. 1 boinc boinc      7986 Sep 30 20:17 run_atlas
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc       105 Sep 30 20:17 job.xml
[2025-09-30 20:21:19] -rw-r--r--. 2 boinc boinc 221384451 Sep 30 20:17 EVNT.46373045._002444.pool.root.1
[2025-09-30 20:21:19] -rw-r--r--. 2 boinc boinc     15120 Sep 30 20:17 start_atlas.sh
[2025-09-30 20:21:19] drwxrwx--x. 2 boinc boinc      4096 Sep 30 20:17 shared
[2025-09-30 20:21:19] -rw-r--r--. 2 boinc boinc    565606 Sep 30 20:17 input.tar.gz
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc      6444 Sep 30 20:17 init_data.xml
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc         0 Sep 30 20:17 boinc_lockfile
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc      2537 Sep 30 20:18 pandaJob.out
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc    978003 Sep 30 20:18 agis_schedconf.cvmfs.json
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc   1560051 Sep 30 20:18 agis_ddmendpoints.agis.ALL.json
[2025-09-30 20:21:19] drwx------. 4 boinc boinc      4096 Sep 30 20:18 pilot3
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc       948 Sep 30 20:18 memory_monitor_summary.json
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc     20848 Sep 30 20:18 log.46373048._073828.job.log.tgz.1
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc       522 Sep 30 20:18 boinc_task_state.xml
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc      8379 Sep 30 20:20 heartbeat.json
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc      8192 Sep 30 20:21 boinc_mmap_file
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc        22 Sep 30 20:21 wrapper_checkpoint.txt
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc       892 Sep 30 20:21 pilotlog.txt
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc        95 Sep 30 20:21 pilot_heartbeat.json
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc     82073 Sep 30 20:21 log.46373048._073828.job.log.1
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc       188 Sep 30 20:21 output.list
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc       620 Sep 30 20:21 runtime_log
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc    122880 Sep 30 20:21 result.tar.gz
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc       645 Sep 30 20:21 XvJMDm66zN8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdVANDm3yHD6m.diag
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc      8526 Sep 30 20:21 runtime_log.err
[2025-09-30 20:21:19] -rw-r--r--. 1 boinc boinc     21604 Sep 30 20:21 stderr.txt
[2025-09-30 20:21:19] No HITS result produced
[2025-09-30 20:21:19]  *** Contents of shared directory: ***
[2025-09-30 20:21:19] total 216892
[2025-09-30 20:21:19] -rw-r--r--. 2 boinc boinc 221384451 Sep 30 20:17 ATLAS.root_0
[2025-09-30 20:21:19] -rw-r--r--. 2 boinc boinc     15120 Sep 30 20:17 start_atlas.sh
[2025-09-30 20:21:19] -rw-r--r--. 2 boinc boinc    565606 Sep 30 20:17 input.tar.gz
[2025-09-30 20:21:19] -rw-------. 1 boinc boinc    122880 Sep 30 20:21 result.tar.gz
20:21:20 (809397): run_atlas exited; CPU time 22.274008
20:21:20 (809397): called boinc_finish(0)

</stderr_txt>
]]>

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