Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:12:51 (3436452): wrapper (7.7.26015): starting
20:12:51 (3436452): wrapper: running run_atlas (--nthreads 8)
[2025-09-30 20:12:51] Arguments: --nthreads 8
[2025-09-30 20:12:51] Threads: 8
[2025-09-30 20:12:51] Checking for CVMFS
[2025-09-30 20:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-09-30 20:12:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-09-30 20:12:52] Running cvmfs_config stat atlas.cern.ch
[2025-09-30 20:12:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-09-30 20:12:52] 2.11.3.0 1858 15049 196840 151195 3 1291 39536281 45568001 18617 130560 0 58270109 99.742 41105428 31827 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-09-30 20:12:52] CVMFS is ok
[2025-09-30 20:12:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-09-30 20:12:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-09-30 20:12:52] Further information can be found at the LHC@home message board.
[2025-09-30 20:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-09-30 20:12:52] Checking for apptainer binary...
[2025-09-30 20:12:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-09-30 20:12:52] Running /usr/bin/apptainer --version
[2025-09-30 20:12:52] apptainer version 1.4.1-1.el9
[2025-09-30 20:12:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-09-30 20:12:53] wns0016.triumf.lcg
[2025-09-30 20:12:53] apptainer works
[2025-09-30 20:12:53] Set ATHENA_PROC_NUMBER=8
[2025-09-30 20:12:53] Set ATHENA_CORE_NUMBER=8
[2025-09-30 20:12:53] Starting ATLAS job with PandaID=6826241954
[2025-09-30 20:12:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-09-30 20:17:45]  *** The last 200 lines of the pilot log: ***
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | WARNING  | wrong length of table data, x=[1759288466.0], y=[952.0] (must be same and length>=4)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | ..............................
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | . Timing measurements:
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . get job = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . initial setup = 4 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . payload setup = 17 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . stage-in = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . payload execution = 38 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . stage-out = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . log creation = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | ..............................
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6826241954/pilotlog.txt
[2025-09-30 20:17:45] 2025-10-01 03:17:11,826 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-09-30 20:17:45] - Log from pilotlog.txt -
[2025-09-30 20:17:45] 2025-10-01 03:17:11,758 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6826241954/memory_monitor_summary.json (trf name=prmon)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | INFO     | extracted standard info from prmon json
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | INFO     | extracted standard memory fields from prmon json
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | WARNING  | wrong length of table data, x=[1759288466.0], y=[952.0] (must be same and length>=4)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | ..............................
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | . Timing measurements:
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . get job = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . initial setup = 4 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . payload setup = 17 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . stage-in = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . payload execution = 38 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . stage-out = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . log creation = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | ..............................
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6826241954/pilotlog.txt
[2025-09-30 20:17:45] 2025-10-01 03:17:11,826 | WARNING  | 
[2025-09-30 20:17:45] [begin log extracts]
[2025-09-30 20:17:45] - Log from pilotlog.txt -
[2025-09-30 20:17:45] 2025-10-01 03:17:11,758 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6826241954/memory_monitor_summary.json (trf name=prmon)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | INFO     | extracted standard info from prmon json
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | INFO     | extracted standard memory fields from prmon json
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-09-30 20:17:45] 2025-10-01 03:17:11,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | WARNING  | wrong length of table data, x=[1759288466.0], y=[952.0] (must be same and length>=4)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | ..............................
[2025-09-30 20:17:45] 2025-10-01 03:17:11,760 | INFO     | . Timing measurements:
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . get job = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . initial setup = 4 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . payload setup = 17 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . stage-in = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . payload execution = 38 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . stage-out = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | . log creation = 0 s
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | ..............................
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-09-30 20:17:45] 2025-10-01 03:17:11,761 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6826241954/pilotlog.txt
[2025-09-30 20:17:45] [end log extracts]
[2025-09-30 20:17:45] 2025-10-01 03:17:11,827 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-09-30 20:17:45] 2025-10-01 03:17:11,827 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-09-30 20:17:45] 2025-10-01 03:17:12,100 | INFO     | 
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | job summary report
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | --------------------------------------------------
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | PanDA job id: 6826241954
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | task id: 46373048
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-09-30 20:14:46,011 CRITICAL Transform executor raised TransformValidationExceptio
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | status: LOG_TRANSFER = DONE 
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | pilot state: failed 
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | transexitcode: 65
[2025-09-30 20:17:45] 2025-10-01 03:17:12,110 | INFO     | exeerrorcode: 65
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | exitcode: 65
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | cpuconsumptiontime: 19 s
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | nevents: 0
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | neventsw: 0
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | pid: 3446937
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | pgrp: 3446937
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | corecount: 8
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | event service: False
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | sizes: {0: 2348667, 1: 2348866, 12: 2348866, 16: 2349156, 22: 2349184, 61: 2372596, 62: 2376888, 63: 2376916, 195: 2377082}
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | --------------------------------------------------
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | 
[2025-09-30 20:17:45] 2025-10-01 03:17:12,111 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-09-30 20:17:45] 2025-10-01 03:17:12,394 | INFO     | queue jobs had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,400 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | queue completed_jobids has 1 job(s)
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | queue messages had 0 job(s) [purged]
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | job 6826241954 has completed (purged errors)
[2025-09-30 20:17:45] 2025-10-01 03:17:12,401 | INFO     | overall cleanup function is called
[2025-09-30 20:17:45] 2025-10-01 03:17:13,424 | INFO     | --- collectZombieJob: --- 10, [3446937]
[2025-09-30 20:17:45] 2025-10-01 03:17:13,424 | INFO     | zombie collector waiting for pid 3446937
[2025-09-30 20:17:45] 2025-10-01 03:17:13,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-09-30 20:17:45] 2025-10-01 03:17:13,424 | INFO     | collected zombie processes
[2025-09-30 20:17:45] 2025-10-01 03:17:13,424 | INFO     | will attempt to kill all subprocesses of pid=3446937
[2025-09-30 20:17:45] 2025-10-01 03:17:13,808 | INFO     | process IDs to be killed: [3446937] (in reverse order)
[2025-09-30 20:17:45] 2025-10-01 03:17:13,889 | WARNING  | found no corresponding commands to process id(s)
[2025-09-30 20:17:45] 2025-10-01 03:17:13,889 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-09-30 20:17:45] 2025-10-01 03:17:13,898 | INFO     | did not find any defunct processes belonging to 3446937
[2025-09-30 20:17:45] 2025-10-01 03:17:13,907 | INFO     | did not find any defunct processes belonging to 3446937
[2025-09-30 20:17:45] 2025-10-01 03:17:13,907 | INFO     | ready for new job
[2025-09-30 20:17:45] 2025-10-01 03:17:13,907 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-09-30 20:17:45] 2025-10-01 03:17:13,909 | INFO     | ***************************************
[2025-09-30 20:17:45] 2025-10-01 03:17:13,909 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-09-30 20:17:45] 2025-10-01 03:17:13,909 | INFO     | ***************************************
[2025-09-30 20:17:45] 2025-10-01 03:17:13,909 | INFO     | 
[2025-09-30 20:17:45] 2025-10-01 03:17:13,910 | INFO     | architecture information:
[2025-09-30 20:17:45] 2025-10-01 03:17:13,911 | INFO     | executing command: cat /etc/os-release
[2025-09-30 20:17:45] 2025-10-01 03:17:13,922 | INFO     | cat /etc/os-release:
[2025-09-30 20:17:45] NAME="CentOS Linux"
[2025-09-30 20:17:45] VERSION="7 (Core)"
[2025-09-30 20:17:45] ID="centos"
[2025-09-30 20:17:45] ID_LIKE="rhel fedora"
[2025-09-30 20:17:45] VERSION_ID="7"
[2025-09-30 20:17:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-09-30 20:17:45] ANSI_COLOR="0;31"
[2025-09-30 20:17:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-09-30 20:17:45] HOME_URL="https://www.centos.org/"
[2025-09-30 20:17:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-09-30 20:17:45] 
[2025-09-30 20:17:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-09-30 20:17:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-09-30 20:17:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-09-30 20:17:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-09-30 20:17:45] 
[2025-09-30 20:17:45] 2025-10-01 03:17:13,923 | INFO     | ***************************************
[2025-09-30 20:17:45] 2025-10-01 03:17:14,426 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-09-30 20:17:45] 2025-10-01 03:17:14,549 | INFO     | sufficient remaining disk space (964825186304 B)
[2025-09-30 20:17:45] 2025-10-01 03:17:14,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-09-30 20:17:45] 2025-10-01 03:17:14,549 | INFO     | current server update state: UPDATING_FINAL
[2025-09-30 20:17:45] 2025-10-01 03:17:14,549 | INFO     | update_server=False
[2025-09-30 20:17:45] 2025-10-01 03:17:14,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-09-30 20:17:45] 2025-10-01 03:17:14,652 | INFO     | all payload control threads have been joined
[2025-09-30 20:17:45] 2025-10-01 03:17:14,865 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-09-30 20:17:45] 2025-10-01 03:17:14,865 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-09-30 20:17:45] 2025-10-01 03:17:14,865 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-09-30 20:17:45] 2025-10-01 03:17:14,865 | INFO     | will abort loop
[2025-09-30 20:17:45] 2025-10-01 03:17:15,056 | INFO     | all job control threads have been joined
[2025-09-30 20:17:45] 2025-10-01 03:17:15,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-09-30 20:17:45] 2025-10-01 03:17:15,308 | INFO     | all data control threads have been joined
[2025-09-30 20:17:45] 2025-10-01 03:17:15,558 | INFO     | [job] retrieve thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:15,658 | INFO     | [payload] control thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:15,810 | INFO     | [data] copytool_in thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:15,871 | INFO     | [job] job monitor thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,010 | INFO     | [payload] validate_post thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,062 | INFO     | [job] control thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,072 | INFO     | [job] create_data_payload thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,122 | INFO     | [job] validate thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,314 | INFO     | [data] control thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,365 | INFO     | [payload] execute_payloads thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,429 | INFO     | [payload] failed_post thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:16,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-09-30 20:17:45] 2025-10-01 03:17:16,770 | INFO     | [payload] validate_pre thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:17,055 | INFO     | [payload] run_realtimelog thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:17,120 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-09-30 20:17:45] 2025-10-01 03:17:17,260 | INFO     | [data] copytool_out thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:18,126 | INFO     | [job] queue monitor thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:20,730 | INFO     | [data] queue_monitor thread has finished
[2025-09-30 20:17:45] 2025-10-01 03:17:21,370 | INFO     | [monitor] cgroup control has ended
[2025-09-30 20:17:45] 2025-10-01 03:17:21,977 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139725381551936)>', '<ExcThread(monitor, started 139724513588992)>']
[2025-09-30 20:17:45] 2025-10-01 03:17:27,003 | INFO     | all workflow threads have been joined
[2025-09-30 20:17:45] 2025-10-01 03:17:27,003 | INFO     | end of generic workflow (traces error code: 0)
[2025-09-30 20:17:45] 2025-10-01 03:17:27,003 | INFO     | traces error code: 0
[2025-09-30 20:17:45] 2025-10-01 03:17:27,003 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-09-30 20:17:45] 2025-10-01 03:17:44,452 | INFO     | PID=3440230 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-09-30 20:17:45] 2025-10-01 03:17:44,453 | INFO     | .. there are 33 such processes running
[2025-09-30 20:17:45] 2025-10-01 03:17:44,454 | INFO     | found 0 job(s) in 20 queues
[2025-09-30 20:17:45] 2025-10-01 03:17:44,454 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-09-30 20:17:45] 2025-10-01 03:17:44,454 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-09-30 20:17:45] 2025-10-01 03:17:44,454 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-09-30 20:17:45] 2025-10-01 03:17:44,454 | INFO     | [monitor] control thread has ended
[2025-09-30 20:17:45] 2025-10-01 03:17:44,853 [wrapper] ==== pilot stdout END ====
[2025-09-30 20:17:45] 2025-10-01 03:17:44,855 [wrapper] ==== wrapper stdout RESUME ====
[2025-09-30 20:17:45] 2025-10-01 03:17:44,857 [wrapper] pilotpid: 3440230
[2025-09-30 20:17:45] 2025-10-01 03:17:44,859 [wrapper] Pilot exit status: 0
[2025-09-30 20:17:45] 2025-10-01 03:17:44,931 [wrapper] pandaids: 6826241954
[2025-09-30 20:17:45] 2025-10-01 03:17:45,082 [wrapper] cleanup supervisor_pilot 3440236 3440231
[2025-09-30 20:17:45] 2025-10-01 03:17:45,111 [wrapper] Test setup, not cleaning
[2025-09-30 20:17:45] 2025-10-01 03:17:45,136 [wrapper] apfmon messages muted
[2025-09-30 20:17:45] 2025-10-01 03:17:45,182 [wrapper] ==== wrapper stdout END ====
[2025-09-30 20:17:45] 2025-10-01 03:17:45,223 [wrapper] ==== wrapper stderr END ====
[2025-09-30 20:17:45]  *** Error codes and diagnostics ***
[2025-09-30 20:17:45]     "exeErrorCode": 65,
[2025-09-30 20:17:45]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-09-30 20:17:45]     "pilotErrorCode": 1305,
[2025-09-30 20:17:45]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-09-30 20:17:45]  *** Listing of results directory ***
[2025-09-30 20:17:45] total 219836
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc    552446 Sep 30 17:15 pilot3.tar.gz
[2025-09-30 20:17:45] -rwx------. 1 boinc boinc     36292 Sep 30 17:38 runpilot2-wrapper.sh
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc      5112 Sep 30 17:38 queuedata.json
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc       100 Sep 30 20:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-09-30 20:17:45] -rwxr-xr-x. 1 boinc boinc      7986 Sep 30 20:12 run_atlas
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc       105 Sep 30 20:12 job.xml
[2025-09-30 20:17:45] -rw-r--r--. 2 boinc boinc 221000285 Sep 30 20:12 EVNT.46373045._002440.pool.root.1
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc      6443 Sep 30 20:12 init_data.xml
[2025-09-30 20:17:45] -rw-r--r--. 2 boinc boinc     15120 Sep 30 20:12 start_atlas.sh
[2025-09-30 20:17:45] drwxrwx--x. 2 boinc boinc      4096 Sep 30 20:12 shared
[2025-09-30 20:17:45] -rw-r--r--. 2 boinc boinc    565602 Sep 30 20:12 input.tar.gz
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc         0 Sep 30 20:12 boinc_lockfile
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc      2538 Sep 30 20:12 pandaJob.out
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc    978003 Sep 30 20:13 agis_schedconf.cvmfs.json
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc   1560051 Sep 30 20:13 agis_ddmendpoints.agis.ALL.json
[2025-09-30 20:17:45] drwx------. 4 boinc boinc      4096 Sep 30 20:13 pilot3
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc       524 Sep 30 20:14 boinc_task_state.xml
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc       948 Sep 30 20:14 memory_monitor_summary.json
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc     22260 Sep 30 20:14 log.46373048._073734.job.log.tgz.1
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc      8362 Sep 30 20:17 heartbeat.json
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc      8192 Sep 30 20:17 boinc_mmap_file
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc        23 Sep 30 20:17 wrapper_checkpoint.txt
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc        95 Sep 30 20:17 pilot_heartbeat.json
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc       823 Sep 30 20:17 pilotlog.txt
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc     90814 Sep 30 20:17 log.46373048._073734.job.log.1
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc       188 Sep 30 20:17 output.list
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc       620 Sep 30 20:17 runtime_log
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc    133120 Sep 30 20:17 result.tar.gz
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc      8526 Sep 30 20:17 runtime_log.err
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc       644 Sep 30 20:17 kweMDmx2zN8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZUANDmiASyEn.diag
[2025-09-30 20:17:45] -rw-r--r--. 1 boinc boinc     21822 Sep 30 20:17 stderr.txt
[2025-09-30 20:17:45] No HITS result produced
[2025-09-30 20:17:45]  *** Contents of shared directory: ***
[2025-09-30 20:17:45] total 216528
[2025-09-30 20:17:45] -rw-r--r--. 2 boinc boinc 221000285 Sep 30 20:12 ATLAS.root_0
[2025-09-30 20:17:45] -rw-r--r--. 2 boinc boinc     15120 Sep 30 20:12 start_atlas.sh
[2025-09-30 20:17:45] -rw-r--r--. 2 boinc boinc    565602 Sep 30 20:12 input.tar.gz
[2025-09-30 20:17:45] -rw-------. 1 boinc boinc    133120 Sep 30 20:17 result.tar.gz
20:17:47 (3436452): run_atlas exited; CPU time 29.885202
20:17:47 (3436452): called boinc_finish(0)

</stderr_txt>
]]>

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