Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
10:22:24 (1238734): wrapper (7.7.26015): starting
10:22:24 (1238734): wrapper: running run_atlas (--nthreads 12)
[2025-10-07 10:22:24] Arguments: --nthreads 12
[2025-10-07 10:22:24] Threads: 12
[2025-10-07 10:22:24] Checking for CVMFS
[2025-10-07 10:22:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-07 10:22:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-07 10:22:32] Running cvmfs_config stat atlas.cern.ch
[2025-10-07 10:22:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-07 10:22:33] 2.11.0.0 1238912 0 23512 151434 3 1 4572566 6144001 0 130560 0 0 0.000 1291 630 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-07 10:22:33] CVMFS is ok
[2025-10-07 10:22:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-07 10:22:33] Checking for apptainer binary...
[2025-10-07 10:22:33] apptainer is not installed, using version from CVMFS
[2025-10-07 10:22:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-07 10:22:33] radiat0r
[2025-10-07 10:22:33] apptainer works
[2025-10-07 10:22:33] Set ATHENA_PROC_NUMBER=12
[2025-10-07 10:22:33] Set ATHENA_CORE_NUMBER=12
[2025-10-07 10:22:33] Starting ATLAS job with PandaID=6826040632
[2025-10-07 10:22:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/61 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-07 11:09:05]  *** The last 200 lines of the pilot log: ***
[2025-10-07 11:09:05]  status_code=0
[2025-10-07 11:09:05]  storage_token=
[2025-10-07 11:09:05]  surl=/var/lib/boinc/slots/61/PanDA_Pilot-6826040632/log.46373048._061346.job.log.tgz.1
[2025-10-07 11:09:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/44/log.46373048._061346.job.log.tgz.1
[2025-10-07 11:09:05]  workdir=None
[2025-10-07 11:09:05] ]
[2025-10-07 11:09:05] 2025-10-07 11:08:04,828 | INFO     | transferring file log.46373048._061346.job.log.tgz.1 from /var/lib/boinc/slots/61/PanDA_Pilot-6826040632/log.46373048._061346.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-07 11:09:05] 2025-10-07 11:08:04,828 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/61/PanDA_Pilot-6826040632/log.46373048._061346.job.log.tgz.1 /var/lib/boinc/slots/61/log.46373048._061346.j
[2025-10-07 11:09:05] 2025-10-07 11:08:04,845 | INFO     | adding to output.list: log.46373048._061346.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/29/44/log.46373048._061346.job.log.tg
[2025-10-07 11:09:05] 2025-10-07 11:08:04,846 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-07 11:09:05] 2025-10-07 11:08:04,846 | INFO     | summary of transferred files:
[2025-10-07 11:09:05] 2025-10-07 11:08:04,846 | INFO     |  -- lfn=log.46373048._061346.job.log.tgz.1, status_code=0, status=transferred
[2025-10-07 11:09:05] 2025-10-07 11:08:04,846 | INFO     | stage-out finished correctly
[2025-10-07 11:09:05] 2025-10-07 11:08:05,988 | INFO     | time since job start (2710s) is within the limit (172800.0s)
[2025-10-07 11:09:05] 2025-10-07 11:08:07,192 | WARNING  | process 1277819 can no longer be monitored (due to stat problems) - aborting
[2025-10-07 11:09:05] 2025-10-07 11:08:07,193 | INFO     | using path: /var/lib/boinc/slots/61/PanDA_Pilot-6826040632/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 11:09:05] 2025-10-07 11:08:07,638 | INFO     | number of running child processes to parent process 1277819: 1
[2025-10-07 11:09:05] 2025-10-07 11:08:07,638 | INFO     | maximum number of monitored processes: 6
[2025-10-07 11:09:05] 2025-10-07 11:08:07,991 | INFO     | time since job start (2712s) is within the limit (172800.0s)
[2025-10-07 11:09:05] 2025-10-07 11:08:08,117 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-07 11:09:05] 2025-10-07 11:08:09,358 | INFO     | job 6826040632 has state=finished
[2025-10-07 11:09:05] 2025-10-07 11:08:09,359 | INFO     | preparing for final server update for job 6826040632 in state='finished'
[2025-10-07 11:09:05] 2025-10-07 11:08:09,359 | INFO     | this job has now completed (state=finished)
[2025-10-07 11:09:05] 2025-10-07 11:08:09,359 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-07 11:09:05] 2025-10-07 11:08:09,360 | INFO     | log transfer has been attempted: DONE
[2025-10-07 11:09:05] 2025-10-07 11:08:09,360 | INFO     | job 6826040632 has finished - writing final server update
[2025-10-07 11:09:05] 2025-10-07 11:08:09,360 | INFO     | total number of processed events: 400 (read)
[2025-10-07 11:09:05] 2025-10-07 11:08:09,361 | INFO     | executing command: lscpu
[2025-10-07 11:09:05] 2025-10-07 11:08:09,497 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-07 11:09:05] 2025-10-07 11:08:09,997 | INFO     | time since job start (2714s) is within the limit (172800.0s)
[2025-10-07 11:09:05] 2025-10-07 11:08:10,141 | INFO     | monitor loop #198: job 0:6826040632 is in state 'finished'
[2025-10-07 11:09:05] 2025-10-07 11:08:10,141 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 11:09:05] 2025-10-07 11:08:11,999 | INFO     | time since job start (2716s) is within the limit (172800.0s)
[2025-10-07 11:09:05] 2025-10-07 11:08:12,645 | INFO     | monitor loop #199: job 0:6826040632 is in state 'finished'
[2025-10-07 11:09:05] 2025-10-07 11:08:12,645 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-07 11:09:05] 2025-10-07 11:08:13,986 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-07 11:09:05] 2025-10-07 11:08:14,004 | INFO     | time since job start (2719s) is within the limit (172800.0s)
[2025-10-07 11:09:05] 2025-10-07 11:08:14,038 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2717.795558593751
[2025-10-07 11:09:05] 2025-10-07 11:08:14,132 | INFO     | using path: /var/lib/boinc/slots/61/PanDA_Pilot-6826040632/memory_monitor_summary.json (trf name=prmon)
[2025-10-07 11:09:05] 2025-10-07 11:08:14,133 | INFO     | extracted standard info from prmon json
[2025-10-07 11:09:05] 2025-10-07 11:08:14,133 | INFO     | extracted standard memory fields from prmon json
[2025-10-07 11:09:05] 2025-10-07 11:08:14,133 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-07 11:09:05] 2025-10-07 11:08:14,133 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-07 11:09:05] 2025-10-07 11:08:14,133 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-07 11:09:05] 2025-10-07 11:08:14,134 | INFO     | fitting pss+swap vs Time
[2025-10-07 11:09:05] 2025-10-07 11:08:14,134 | INFO     | sum of square deviations: 15695178.0
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | sum of deviations: 381330459.00000006
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | mean x: 1759834005.0
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | mean y: 2824116.378378378
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | -- intersect: -42754149324.15593
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | intersect: -42754149324.15593
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | chi2: 0.00030889891995054965
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | -- intersect: -42754149324.15593
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | current memory leak: 24.30 B/s (using 37 data points, chi2=0.00)
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | could have reported an average CPU frequency of 2859 MHz (5 samples)
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | ..............................
[2025-10-07 11:09:05] 2025-10-07 11:08:14,135 | INFO     | . Timing measurements:
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | . get job = 0 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | . initial setup = 1 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | . payload setup = 6 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | . stage-in = 0 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | . payload execution = 2683 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | . stage-out = 0 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | . log creation = 0 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,136 | INFO     | ..............................
[2025-10-07 11:09:05] 2025-10-07 11:08:14,196 | INFO     | 
[2025-10-07 11:09:05] 2025-10-07 11:08:14,196 | INFO     | job summary report
[2025-10-07 11:09:05] 2025-10-07 11:08:14,196 | INFO     | --------------------------------------------------
[2025-10-07 11:09:05] 2025-10-07 11:08:14,196 | INFO     | PanDA job id: 6826040632
[2025-10-07 11:09:05] 2025-10-07 11:08:14,196 | INFO     | task id: 46373048
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | errors: (none)
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | pilot state: finished 
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | transexitcode: 0
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | exeerrorcode: 0
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | exeerrordiag: 
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | exitcode: 0
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | exitmsg: OK
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | cpuconsumptiontime: 28702 s
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | nevents: 400
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | neventsw: 0
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | pid: 1277819
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | pgrp: 1277819
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | corecount: 12
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | event service: False
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | sizes: {0: 2348840, 5: 2349102, 11: 2349158, 2693: 2374422, 2694: 2383422, 2698: 2383478, 2704: 2383832}
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | --------------------------------------------------
[2025-10-07 11:09:05] 2025-10-07 11:08:14,197 | INFO     | 
[2025-10-07 11:09:05] 2025-10-07 11:08:14,198 | INFO     | executing command: ls -lF /var/lib/boinc/slots/61
[2025-10-07 11:09:05] 2025-10-07 11:08:14,218 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,218 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,218 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,218 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,219 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,220 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,220 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,220 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,220 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-07 11:09:05] 2025-10-07 11:08:14,220 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,220 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-07 11:09:05] 2025-10-07 11:08:14,220 | INFO     | job 6826040632 has completed (purged errors)
[2025-10-07 11:09:05] 2025-10-07 11:08:14,221 | INFO     | overall cleanup function is called
[2025-10-07 11:09:05] 2025-10-07 11:08:15,231 | INFO     | --- collectZombieJob: --- 10, [1277819]
[2025-10-07 11:09:05] 2025-10-07 11:08:15,231 | INFO     | zombie collector waiting for pid 1277819
[2025-10-07 11:09:05] 2025-10-07 11:08:15,231 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-07 11:09:05] 2025-10-07 11:08:15,231 | INFO     | collected zombie processes
[2025-10-07 11:09:05] 2025-10-07 11:08:15,231 | INFO     | will attempt to kill all subprocesses of pid=1277819
[2025-10-07 11:09:05] 2025-10-07 11:08:15,671 | INFO     | process IDs to be killed: [1277819] (in reverse order)
[2025-10-07 11:09:05] 2025-10-07 11:08:15,838 | WARNING  | found no corresponding commands to process id(s)
[2025-10-07 11:09:05] 2025-10-07 11:08:15,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-07 11:09:05] 2025-10-07 11:08:15,856 | INFO     | did not find any defunct processes belonging to 1277819
[2025-10-07 11:09:05] 2025-10-07 11:08:15,868 | INFO     | did not find any defunct processes belonging to 1277819
[2025-10-07 11:09:05] 2025-10-07 11:08:15,869 | INFO     | ready for new job
[2025-10-07 11:09:05] 2025-10-07 11:08:15,869 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-07 11:09:05] 2025-10-07 11:08:15,871 | INFO     | ***************************************
[2025-10-07 11:09:05] 2025-10-07 11:08:15,872 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-07 11:09:05] 2025-10-07 11:08:15,872 | INFO     | ***************************************
[2025-10-07 11:09:05] 2025-10-07 11:08:15,872 | INFO     | 
[2025-10-07 11:09:05] 2025-10-07 11:08:15,916 | INFO     | architecture information:
[2025-10-07 11:09:05] 2025-10-07 11:08:15,916 | INFO     | executing command: cat /etc/os-release
[2025-10-07 11:09:05] 2025-10-07 11:08:15,936 | INFO     | cat /etc/os-release:
[2025-10-07 11:09:05] NAME="CentOS Linux"
[2025-10-07 11:09:05] VERSION="7 (Core)"
[2025-10-07 11:09:05] ID="centos"
[2025-10-07 11:09:05] ID_LIKE="rhel fedora"
[2025-10-07 11:09:05] VERSION_ID="7"
[2025-10-07 11:09:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-07 11:09:05] ANSI_COLOR="0;31"
[2025-10-07 11:09:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-07 11:09:05] HOME_URL="https://www.centos.org/"
[2025-10-07 11:09:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-07 11:09:05] 
[2025-10-07 11:09:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-07 11:09:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-07 11:09:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-07 11:09:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-07 11:09:05] 
[2025-10-07 11:09:05] 2025-10-07 11:08:15,937 | INFO     | ***************************************
[2025-10-07 11:09:05] 2025-10-07 11:08:16,440 | INFO     | executing command: df -mP /var/lib/boinc/slots/61
[2025-10-07 11:09:05] 2025-10-07 11:08:16,464 | INFO     | sufficient remaining disk space (1650965086208 B)
[2025-10-07 11:09:05] 2025-10-07 11:08:16,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-07 11:09:05] 2025-10-07 11:08:16,465 | INFO     | current server update state: UPDATING_FINAL
[2025-10-07 11:09:05] 2025-10-07 11:08:16,465 | INFO     | update_server=False
[2025-10-07 11:09:05] 2025-10-07 11:08:16,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-07 11:09:05] 2025-10-07 11:08:16,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-07 11:09:05] 2025-10-07 11:08:16,465 | INFO     | aborting loop
[2025-10-07 11:09:05] 2025-10-07 11:08:16,655 | INFO     | all data control threads have been joined
[2025-10-07 11:09:05] 2025-10-07 11:08:17,470 | INFO     | [job] retrieve thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:17,471 | INFO     | [job] job monitor thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:17,660 | INFO     | [data] control thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:17,685 | INFO     | [payload] validate_post thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:17,744 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:17,824 | INFO     | all payload control threads have been joined
[2025-10-07 11:09:05] 2025-10-07 11:08:17,858 | INFO     | all job control threads have been joined
[2025-10-07 11:09:05] 2025-10-07 11:08:17,886 | INFO     | [job] validate thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:17,921 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-07 11:09:05] 2025-10-07 11:08:17,948 | INFO     | [payload] failed_post thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:18,043 | INFO     | [job] create_data_payload thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:18,098 | INFO     | [payload] validate_pre thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:18,310 | INFO     | [payload] execute_payloads thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:18,380 | INFO     | [data] copytool_in thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:18,690 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-07 11:09:05] 2025-10-07 11:08:18,829 | INFO     | [payload] control thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:18,863 | INFO     | [job] control thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:19,207 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-07 11:09:05] 2025-10-07 11:08:19,927 | INFO     | [data] copytool_out thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:20,212 | INFO     | [job] queue monitor thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:22,694 | INFO     | [data] queue_monitor thread has finished
[2025-10-07 11:09:05] 2025-10-07 11:08:47,637 | INFO     | PID=1253319 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-07 11:09:05] 2025-10-07 11:08:47,637 | INFO     | .. there are 2 such processes running
[2025-10-07 11:09:05] 2025-10-07 11:08:47,637 | INFO     | found 0 job(s) in 20 queues
[2025-10-07 11:09:05] 2025-10-07 11:08:47,637 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-07 11:09:05] 2025-10-07 11:08:47,637 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-07 11:09:05] 2025-10-07 11:08:59,136 | INFO     | [monitor] cgroup control has ended
[2025-10-07 11:09:05] 2025-10-07 11:08:59,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140116447151936)>', '<ExcThread(monitor, started 140116144133888)>']
[2025-10-07 11:09:05] 2025-10-07 11:09:00,700 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-07 11:09:05] 2025-10-07 11:09:00,701 | INFO     | [monitor] control thread has ended
[2025-10-07 11:09:05] 2025-10-07 11:09:04,902 | INFO     | all workflow threads have been joined
[2025-10-07 11:09:05] 2025-10-07 11:09:04,903 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-07 11:09:05] 2025-10-07 11:09:04,903 | INFO     | traces error code: 0
[2025-10-07 11:09:05] 2025-10-07 11:09:04,903 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-07 11:09:05] 2025-10-07 11:09:05,025 [wrapper] ==== pilot stdout END ====
[2025-10-07 11:09:05] 2025-10-07 11:09:05,028 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-07 11:09:05] 2025-10-07 11:09:05,031 [wrapper] pilotpid: 1253319
[2025-10-07 11:09:05] 2025-10-07 11:09:05,033 [wrapper] Pilot exit status: 0
[2025-10-07 11:09:05] 2025-10-07 11:09:05,042 [wrapper] pandaids: 6826040632
[2025-10-07 11:09:05] 2025-10-07 11:09:05,148 [wrapper] cleanup supervisor_pilot 1328132 1253320
[2025-10-07 11:09:05] 2025-10-07 11:09:05,150 [wrapper] Test setup, not cleaning
[2025-10-07 11:09:05] 2025-10-07 11:09:05,153 [wrapper] apfmon messages muted
[2025-10-07 11:09:05] 2025-10-07 11:09:05,155 [wrapper] ==== wrapper stdout END ====
[2025-10-07 11:09:05] 2025-10-07 11:09:05,157 [wrapper] ==== wrapper stderr END ====
[2025-10-07 11:09:05]  *** Error codes and diagnostics ***
[2025-10-07 11:09:05]     "exeErrorCode": 0,
[2025-10-07 11:09:05]     "exeErrorDiag": "",
[2025-10-07 11:09:05]     "pilotErrorCode": 0,
[2025-10-07 11:09:05]     "pilotErrorDiag": "",
[2025-10-07 11:09:05]  *** Listing of results directory ***
[2025-10-07 11:09:05] total 409064
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc    552446 Sep 30 13:41 pilot3.tar.gz
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc      5112 Sep 30 13:50 queuedata.json
[2025-10-07 11:09:05] -rwx------ 1 boinc boinc     36292 Sep 30 13:50 runpilot2-wrapper.sh
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc       100 Oct  7 10:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-07 11:09:05] -rwxr-xr-x 1 boinc boinc      7986 Oct  7 10:22 run_atlas
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc       105 Oct  7 10:22 job.xml
[2025-10-07 11:09:05] -rw-r--r-- 2 boinc boinc 218190208 Oct  7 10:22 EVNT.46373045._001943.pool.root.1
[2025-10-07 11:09:05] -rw-r--r-- 2 boinc boinc     15120 Oct  7 10:22 start_atlas.sh
[2025-10-07 11:09:05] drwxrwx--x 2 boinc boinc      4096 Oct  7 10:22 shared
[2025-10-07 11:09:05] -rw-r--r-- 2 boinc boinc    565600 Oct  7 10:22 input.tar.gz
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc      9396 Oct  7 10:22 init_data.xml
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc         0 Oct  7 10:22 boinc_setup_complete
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc         0 Oct  7 10:22 boinc_lockfile
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc      2537 Oct  7 10:22 pandaJob.out
[2025-10-07 11:09:05] -rw------- 1 boinc boinc    975010 Oct  7 10:22 agis_schedconf.cvmfs.json
[2025-10-07 11:09:05] -rw------- 1 boinc boinc   1560401 Oct  7 10:22 agis_ddmendpoints.agis.ALL.json
[2025-10-07 11:09:05] drwx------ 4 boinc boinc      4096 Oct  7 10:22 pilot3
[2025-10-07 11:09:05] -rw------- 1 boinc boinc 195280965 Oct  7 11:07 HITS.46373048._061346.pool.root.1
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc       529 Oct  7 11:07 boinc_task_state.xml
[2025-10-07 11:09:05] -rw------- 1 boinc boinc        95 Oct  7 11:07 pilot_heartbeat.json
[2025-10-07 11:09:05] -rw------- 1 boinc boinc      1017 Oct  7 11:08 memory_monitor_summary.json
[2025-10-07 11:09:05] -rw------- 1 boinc boinc    343576 Oct  7 11:08 log.46373048._061346.job.log.tgz.1
[2025-10-07 11:09:05] -rw------- 1 boinc boinc      7734 Oct  7 11:08 heartbeat.json
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc      8192 Oct  7 11:08 boinc_mmap_file
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc        27 Oct  7 11:08 wrapper_checkpoint.txt
[2025-10-07 11:09:05] -rw------- 1 boinc boinc      4826 Oct  7 11:09 pilotlog.txt
[2025-10-07 11:09:05] -rw------- 1 boinc boinc    412262 Oct  7 11:09 log.46373048._061346.job.log.1
[2025-10-07 11:09:05] -rw------- 1 boinc boinc       357 Oct  7 11:09 output.list
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc       620 Oct  7 11:09 runtime_log
[2025-10-07 11:09:05] -rw------- 1 boinc boinc    778240 Oct  7 11:09 result.tar.gz
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc      8672 Oct  7 11:09 runtime_log.err
[2025-10-07 11:09:05] -rw------- 1 boinc boinc       643 Oct  7 11:09 F5zMDmQvpN8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2B8MDm3kb2Fn.diag
[2025-10-07 11:09:05] -rw-r--r-- 1 boinc boinc     21819 Oct  7 11:09 stderr.txt
[2025-10-07 11:09:05] HITS file was successfully produced:
[2025-10-07 11:09:05] -rw------- 1 boinc boinc 195280965 Oct  7 11:07 shared/HITS.pool.root.1
[2025-10-07 11:09:05]  *** Contents of shared directory: ***
[2025-10-07 11:09:05] total 405128
[2025-10-07 11:09:05] -rw-r--r-- 2 boinc boinc 218190208 Oct  7 10:22 ATLAS.root_0
[2025-10-07 11:09:05] -rw-r--r-- 2 boinc boinc     15120 Oct  7 10:22 start_atlas.sh
[2025-10-07 11:09:05] -rw-r--r-- 2 boinc boinc    565600 Oct  7 10:22 input.tar.gz
[2025-10-07 11:09:05] -rw------- 1 boinc boinc 195280965 Oct  7 11:07 HITS.pool.root.1
[2025-10-07 11:09:05] -rw------- 1 boinc boinc    778240 Oct  7 11:09 result.tar.gz
11:09:07 (1238734): run_atlas exited; CPU time 28804.319035
11:09:07 (1238734): called boinc_finish(0)

</stderr_txt>
]]>

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