Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:48:53 (1329871): wrapper (7.7.26015): starting
13:48:53 (1329871): wrapper: running run_atlas (--nthreads 12)
[2025-07-30 13:48:53] Arguments: --nthreads 12
[2025-07-30 13:48:53] Threads: 12
[2025-07-30 13:48:53] Checking for CVMFS
[2025-07-30 13:48:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-30 13:48:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-30 13:48:54] Running cvmfs_config stat atlas.cern.ch
[2025-07-30 13:48:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-30 13:48:55] 2.12.6.0 2794239 23006 335956 148930 1 484 29747408 40960001 17090 16776704 1 53740221 99.735 59586299 24016 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-30 13:48:55] CVMFS is ok
[2025-07-30 13:48:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-30 13:48:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-30 13:48:55] Further information can be found at the LHC@home message board.
[2025-07-30 13:48:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-30 13:48:55] Checking for apptainer binary...
[2025-07-30 13:48:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-30 13:48:55] Running /usr/bin/apptainer --version
[2025-07-30 13:48:55] apptainer version 1.4.1-1.el9
[2025-07-30 13:48:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-30 13:48:55] c6-8-12-4.aglt2.org
[2025-07-30 13:48:55] apptainer works
[2025-07-30 13:48:55] Set ATHENA_PROC_NUMBER=12
[2025-07-30 13:48:55] Set ATHENA_CORE_NUMBER=12
[2025-07-30 13:48:55] Starting ATLAS job with PandaID=6750908289
[2025-07-30 13:48:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:45:55 (1640554): wrapper (7.7.26015): starting
15:45:55 (1640554): wrapper: running run_atlas (--nthreads 12)
[2025-07-30 15:45:55] Arguments: --nthreads 12
[2025-07-30 15:45:55] Threads: 12
[2025-07-30 15:45:55] This job has been restarted, cleaning up previous attempt
[2025-07-30 15:45:55] Checking for CVMFS
[2025-07-30 15:45:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-30 15:45:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-30 15:45:56] Running cvmfs_config stat atlas.cern.ch
[2025-07-30 15:45:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-30 15:45:56] 2.12.6.0 2794239 23123 319452 148933 1 190 30778608 40960000 15712 16776704 1 53880032 99.736 59953789 24057 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-30 15:45:56] CVMFS is ok
[2025-07-30 15:45:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-30 15:45:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-30 15:45:56] Further information can be found at the LHC@home message board.
[2025-07-30 15:45:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-30 15:45:56] Checking for apptainer binary...
[2025-07-30 15:45:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-30 15:45:56] Running /usr/bin/apptainer --version
[2025-07-30 15:45:56] apptainer version 1.4.1-1.el9
[2025-07-30 15:45:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-30 15:45:56] c6-8-12-4.aglt2.org
[2025-07-30 15:45:56] apptainer works
[2025-07-30 15:45:56] Set ATHENA_PROC_NUMBER=12
[2025-07-30 15:45:56] Set ATHENA_CORE_NUMBER=12
[2025-07-30 15:45:56] Starting ATLAS job with PandaID=6750908289
[2025-07-30 15:45:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-30 20:29:41]  *** The last 200 lines of the pilot log: ***
[2025-07-30 20:29:41] 2025-07-31 00:29:04,520 | INFO     | monitor loop #1076: job 0:6750908289 is in state 'finished'
[2025-07-30 20:29:41] 2025-07-31 00:29:04,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,498 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-30 20:29:41] 2025-07-31 00:29:06,509 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2848.8506785714285
[2025-07-30 20:29:41] 2025-07-31 00:29:06,525 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6750908289/memory_monitor_summary.json (trf name=prmon)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,526 | INFO     | extracted standard info from prmon json
[2025-07-30 20:29:41] 2025-07-31 00:29:06,526 | INFO     | extracted standard memory fields from prmon json
[2025-07-30 20:29:41] 2025-07-31 00:29:06,526 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-30 20:29:41] 2025-07-31 00:29:06,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-30 20:29:41] 2025-07-31 00:29:06,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-30 20:29:41] 2025-07-31 00:29:06,536 | INFO     | fitting pss+swap vs Time
[2025-07-30 20:29:41] 2025-07-31 00:29:06,537 | INFO     | sum of square deviations: 6590415768.433242
[2025-07-30 20:29:41] 2025-07-31 00:29:06,539 | INFO     | sum of deviations: -2827265526.989166
[2025-07-30 20:29:41] 2025-07-31 00:29:06,539 | INFO     | mean x: 1753913244.2129965
[2025-07-30 20:29:41] 2025-07-31 00:29:06,539 | INFO     | mean y: 2370476.8303249096
[2025-07-30 20:29:41] 2025-07-31 00:29:06,539 | INFO     | -- intersect: 754793180.7885001
[2025-07-30 20:29:41] 2025-07-31 00:29:06,539 | INFO     | intersect: 754793180.7885001
[2025-07-30 20:29:41] 2025-07-31 00:29:06,539 | INFO     | chi2: 1.993196289806934
[2025-07-30 20:29:41] 2025-07-31 00:29:06,540 | INFO     | sum of square deviations: 6239952773.202257
[2025-07-30 20:29:41] 2025-07-31 00:29:06,541 | INFO     | sum of deviations: -121677497.33823347
[2025-07-30 20:29:41] 2025-07-31 00:29:06,541 | INFO     | mean x: 1753913091.7169118
[2025-07-30 20:29:41] 2025-07-31 00:29:06,542 | INFO     | mean y: 2371647.0735294116
[2025-07-30 20:29:41] 2025-07-31 00:29:06,542 | INFO     | -- intersect: 36572507.77000507
[2025-07-30 20:29:41] 2025-07-31 00:29:06,542 | INFO     | intersect: 36572507.77000507
[2025-07-30 20:29:41] 2025-07-31 00:29:06,542 | INFO     | chi2: 1.9899278158125033
[2025-07-30 20:29:41] 2025-07-31 00:29:06,542 | INFO     | current chi2=1.9899278158125033 (change=0.1639815411630751 %)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,542 | INFO     | right removable region: 271
[2025-07-30 20:29:41] 2025-07-31 00:29:06,543 | INFO     | sum of square deviations: 6239916783.202257
[2025-07-30 20:29:41] 2025-07-31 00:29:06,544 | INFO     | sum of deviations: -46840250390.04048
[2025-07-30 20:29:41] 2025-07-31 00:29:06,544 | INFO     | mean x: 1753913396.7169118
[2025-07-30 20:29:41] 2025-07-31 00:29:06,545 | INFO     | mean y: 2389493.856617647
[2025-07-30 20:29:41] 2025-07-31 00:29:06,545 | INFO     | -- intersect: 13168228962.39295
[2025-07-30 20:29:41] 2025-07-31 00:29:06,545 | INFO     | intersect: 13168228962.39295
[2025-07-30 20:29:41] 2025-07-31 00:29:06,545 | INFO     | chi2: 0.43133951597681774
[2025-07-30 20:29:41] 2025-07-31 00:29:06,545 | INFO     | current chi2=0.43133951597681774 (change=78.35940603629167 %)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,545 | INFO     | sum of square deviations: 5902069197.962574
[2025-07-30 20:29:41] 2025-07-31 00:29:06,547 | INFO     | sum of deviations: -47320850185.87264
[2025-07-30 20:29:41] 2025-07-31 00:29:06,547 | INFO     | mean x: 1753913549.2209737
[2025-07-30 20:29:41] 2025-07-31 00:29:06,548 | INFO     | mean y: 2389662.0486891386
[2025-07-30 20:29:41] 2025-07-31 00:29:06,548 | INFO     | -- intersect: 14064691800.13761
[2025-07-30 20:29:41] 2025-07-31 00:29:06,548 | INFO     | intersect: 14064691800.13761
[2025-07-30 20:29:41] 2025-07-31 00:29:06,548 | INFO     | chi2: 0.3708270558138583
[2025-07-30 20:29:41] 2025-07-31 00:29:06,548 | INFO     | current chi2=0.3708270558138583 (change=14.02896278258255 %)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,548 | INFO     | left removable region: 20
[2025-07-30 20:29:41] 2025-07-31 00:29:06,549 | INFO     | sum of square deviations: 4903389516.3825
[2025-07-30 20:29:41] 2025-07-31 00:29:06,550 | INFO     | sum of deviations: -18182697051.53386
[2025-07-30 20:29:41] 2025-07-31 00:29:06,550 | INFO     | mean x: 1753913671.2151394
[2025-07-30 20:29:41] 2025-07-31 00:29:06,550 | INFO     | mean y: 2378243.824701195
[2025-07-30 20:29:41] 2025-07-31 00:29:06,550 | INFO     | -- intersect: 6506222336.0998955
[2025-07-30 20:29:41] 2025-07-31 00:29:06,550 | INFO     | intersect: 6506222336.0998955
[2025-07-30 20:29:41] 2025-07-31 00:29:06,551 | INFO     | chi2: 0.2342398427463107
[2025-07-30 20:29:41] 2025-07-31 00:29:06,551 | INFO     | -- intersect: 6506222336.0998955
[2025-07-30 20:29:41] 2025-07-31 00:29:06,551 | INFO     | current memory leak: -3.71 B/s (using 251 data points, chi2=0.23)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,551 | INFO     | could have reported an average CPU frequency of 2765 MHz (13 samples)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | ..............................
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . Timing measurements:
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . get job = 0 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . initial setup = 1 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . payload setup = 15 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . stage-in = 0 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . payload execution = 16901 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . stage-out = 3 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | . log creation = 0 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,552 | INFO     | ..............................
[2025-07-30 20:29:41] 2025-07-31 00:29:06,670 | INFO     | 
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | job summary report
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | --------------------------------------------------
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | PanDA job id: 6750908289
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | task id: 45827556
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | errors: (none)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | pilot state: finished 
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | transexitcode: 0
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | exeerrorcode: 0
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | exeerrordiag: 
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | exitcode: 0
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | exitmsg: OK
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | cpuconsumptiontime: 52271 s
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | nevents: 400
[2025-07-30 20:29:41] 2025-07-31 00:29:06,671 | INFO     | neventsw: 0
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | pid: 1651564
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | pgrp: 1651564
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | corecount: 12
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | event service: False
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | sizes: {0: 2391934, 1: 2391934, 10: 2392224, 12: 2392252, 16921: 2424252, 16925: 2433250, 16927: 2433434, 16951: 2433628}
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | --------------------------------------------------
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | 
[2025-07-30 20:29:41] 2025-07-31 00:29:06,672 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-30 20:29:41] 2025-07-31 00:29:06,696 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,696 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,696 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,696 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,696 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,696 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,697 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,698 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-30 20:29:41] 2025-07-31 00:29:06,698 | INFO     | job 6750908289 has completed (purged errors)
[2025-07-30 20:29:41] 2025-07-31 00:29:06,698 | INFO     | overall cleanup function is called
[2025-07-30 20:29:41] 2025-07-31 00:29:07,710 | INFO     | --- collectZombieJob: --- 10, [1651564]
[2025-07-30 20:29:41] 2025-07-31 00:29:07,711 | INFO     | zombie collector waiting for pid 1651564
[2025-07-30 20:29:41] 2025-07-31 00:29:07,716 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-30 20:29:41] 2025-07-31 00:29:07,716 | INFO     | collected zombie processes
[2025-07-30 20:29:41] 2025-07-31 00:29:07,716 | INFO     | will attempt to kill all subprocesses of pid=1651564
[2025-07-30 20:29:41] 2025-07-31 00:29:08,373 | INFO     | process IDs to be killed: [1651564] (in reverse order)
[2025-07-30 20:29:41] 2025-07-31 00:29:08,567 | WARNING  | found no corresponding commands to process id(s)
[2025-07-30 20:29:41] 2025-07-31 00:29:08,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-30 20:29:41] 2025-07-31 00:29:08,591 | INFO     | did not find any defunct processes belonging to 1651564
[2025-07-30 20:29:41] 2025-07-31 00:29:08,621 | INFO     | did not find any defunct processes belonging to 1651564
[2025-07-30 20:29:41] 2025-07-31 00:29:08,626 | INFO     | ready for new job
[2025-07-30 20:29:41] 2025-07-31 00:29:08,626 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-30 20:29:41] 2025-07-31 00:29:08,628 | INFO     | ***************************************
[2025-07-30 20:29:41] 2025-07-31 00:29:08,629 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-30 20:29:41] 2025-07-31 00:29:08,629 | INFO     | ***************************************
[2025-07-30 20:29:41] 2025-07-31 00:29:08,629 | INFO     | 
[2025-07-30 20:29:41] 2025-07-31 00:29:08,645 | INFO     | architecture information:
[2025-07-30 20:29:41] 2025-07-31 00:29:08,659 | INFO     | executing command: cat /etc/os-release
[2025-07-30 20:29:41] 2025-07-31 00:29:08,763 | INFO     | cat /etc/os-release:
[2025-07-30 20:29:41] NAME="CentOS Linux"
[2025-07-30 20:29:41] VERSION="7 (Core)"
[2025-07-30 20:29:41] ID="centos"
[2025-07-30 20:29:41] ID_LIKE="rhel fedora"
[2025-07-30 20:29:41] VERSION_ID="7"
[2025-07-30 20:29:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-30 20:29:41] ANSI_COLOR="0;31"
[2025-07-30 20:29:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-30 20:29:41] HOME_URL="https://www.centos.org/"
[2025-07-30 20:29:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-30 20:29:41] 
[2025-07-30 20:29:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-30 20:29:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-30 20:29:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-30 20:29:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-30 20:29:41] 
[2025-07-30 20:29:41] 2025-07-31 00:29:08,763 | INFO     | ***************************************
[2025-07-30 20:29:41] 2025-07-31 00:29:09,267 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-30 20:29:41] 2025-07-31 00:29:09,378 | INFO     | sufficient remaining disk space (56113496064 B)
[2025-07-30 20:29:41] 2025-07-31 00:29:09,378 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-30 20:29:41] 2025-07-31 00:29:09,378 | INFO     | current server update state: UPDATING_FINAL
[2025-07-30 20:29:41] 2025-07-31 00:29:09,379 | INFO     | update_server=False
[2025-07-30 20:29:41] 2025-07-31 00:29:09,379 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-30 20:29:41] 2025-07-31 00:29:09,379 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-30 20:29:41] 2025-07-31 00:29:09,517 | INFO     | all payload control threads have been joined
[2025-07-30 20:29:41] 2025-07-31 00:29:09,582 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-30 20:29:41] 2025-07-31 00:29:09,583 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-30 20:29:41] 2025-07-31 00:29:09,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-30 20:29:41] 2025-07-31 00:29:09,583 | INFO     | will abort loop
[2025-07-30 20:29:41] 2025-07-31 00:29:09,706 | INFO     | all data control threads have been joined
[2025-07-30 20:29:41] 2025-07-31 00:29:09,754 | INFO     | all job control threads have been joined
[2025-07-30 20:29:41] 2025-07-31 00:29:10,388 | INFO     | [job] retrieve thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:10,435 | INFO     | [payload] validate_post thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:10,524 | INFO     | [payload] control thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:10,590 | INFO     | [job] job monitor thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:10,679 | INFO     | [data] copytool_in thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:10,713 | INFO     | [data] control thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:10,762 | INFO     | [job] control thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:11,011 | INFO     | [payload] execute_payloads thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:11,054 | INFO     | [payload] validate_pre thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:11,389 | INFO     | [data] copytool_out thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:11,522 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:11,593 | INFO     | [payload] failed_post thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:11,687 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-30 20:29:41] 2025-07-31 00:29:11,768 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-30 20:29:41] 2025-07-31 00:29:11,876 | INFO     | [job] create_data_payload thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:11,877 | INFO     | [job] validate thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:12,693 | INFO     | [job] queue monitor thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:15,781 | INFO     | [data] queue_monitor thread has finished
[2025-07-30 20:29:41] 2025-07-31 00:29:17,261 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686908053312)>', '<ExcThread(monitor, started 139686253143808)>']
[2025-07-30 20:29:41] 2025-07-31 00:29:22,287 | INFO     | all workflow threads have been joined
[2025-07-30 20:29:41] 2025-07-31 00:29:22,288 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-30 20:29:41] 2025-07-31 00:29:22,288 | INFO     | traces error code: 0
[2025-07-30 20:29:41] 2025-07-31 00:29:22,288 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-30 20:29:41] 2025-07-31 00:29:40,402 | INFO     | PID=1644507 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-30 20:29:41] 2025-07-31 00:29:40,402 | INFO     | .. there are 21 such processes running
[2025-07-30 20:29:41] 2025-07-31 00:29:40,403 | INFO     | found 0 job(s) in 20 queues
[2025-07-30 20:29:41] 2025-07-31 00:29:40,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-30 20:29:41] 2025-07-31 00:29:40,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-30 20:29:41] 2025-07-31 00:29:40,404 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-30 20:29:41] 2025-07-31 00:29:40,404 | INFO     | [monitor] control thread has ended
[2025-07-30 20:29:41] 2025-07-31 00:29:40,609 [wrapper] ==== pilot stdout END ====
[2025-07-30 20:29:41] 2025-07-31 00:29:40,612 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-30 20:29:41] 2025-07-31 00:29:40,614 [wrapper] pilotpid: 1644507
[2025-07-30 20:29:41] 2025-07-31 00:29:40,617 [wrapper] Pilot exit status: 0
[2025-07-30 20:29:41] 2025-07-31 00:29:40,698 [wrapper] pandaids: 6750908289 6750908289
[2025-07-30 20:29:41] 2025-07-31 00:29:41,034 [wrapper] cleanup supervisor_pilot 2337139 1644508
[2025-07-30 20:29:41] 2025-07-31 00:29:41,087 [wrapper] Test setup, not cleaning
[2025-07-30 20:29:41] 2025-07-31 00:29:41,119 [wrapper] apfmon messages muted
[2025-07-30 20:29:41] 2025-07-31 00:29:41,149 [wrapper] ==== wrapper stdout END ====
[2025-07-30 20:29:41] 2025-07-31 00:29:41,171 [wrapper] ==== wrapper stderr END ====
[2025-07-30 20:29:41]  *** Error codes and diagnostics ***
[2025-07-30 20:29:41]     "exeErrorCode": 0,
[2025-07-30 20:29:41]     "exeErrorDiag": "",
[2025-07-30 20:29:41]     "pilotErrorCode": 0,
[2025-07-30 20:29:41]     "pilotErrorDiag": "",
[2025-07-30 20:29:41]  *** Listing of results directory ***
[2025-07-30 20:29:41] total 726944
[2025-07-30 20:29:41] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-30 20:29:41] -rwx------. 1 boincer umatlas     36292 Jul 30 13:47 runpilot2-wrapper.sh
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas      5112 Jul 30 13:47 queuedata.json
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas    530466 Jul 30 13:47 pilot3.tar.gz
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas       100 Jul 30 13:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-30 20:29:41] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 30 13:48 run_atlas
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas       105 Jul 30 13:48 job.xml
[2025-07-30 20:29:41] -rw-r--r--. 3 boincer umatlas 265208858 Jul 30 13:48 EVNT.45827554._000002.pool.root.1
[2025-07-30 20:29:41] -rw-r--r--. 3 boincer umatlas 265208858 Jul 30 13:48 ATLAS.root_0
[2025-07-30 20:29:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 30 13:48 start_atlas.sh
[2025-07-30 20:29:41] drwxrwx--x. 2 boincer umatlas      4096 Jul 30 13:48 shared
[2025-07-30 20:29:41] -rw-r--r--. 2 boincer umatlas    542886 Jul 30 13:48 input.tar.gz
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas         0 Jul 30 13:48 boinc_lockfile
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas      2583 Jul 30 15:45 pandaJob.out
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas    976988 Jul 30 15:46 agis_schedconf.cvmfs.json
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas 206301922 Jul 30 20:27 HITS.45827556._000033.pool.root.1
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas       532 Jul 30 20:28 boinc_task_state.xml
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas      1041 Jul 30 20:28 memory_monitor_summary.json
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas   1589827 Jul 30 20:28 agis_ddmendpoints.agis.ALL.json
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas    473472 Jul 30 20:28 log.45827556._000033.job.log.tgz.1
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas      6843 Jul 30 20:28 init_data.xml
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas      7814 Jul 30 20:29 heartbeat.json
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas      8192 Jul 30 20:29 boinc_mmap_file
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas        28 Jul 30 20:29 wrapper_checkpoint.txt
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas        96 Jul 30 20:29 pilot_heartbeat.json
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas       823 Jul 30 20:29 pilotlog.txt
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas   1423825 Jul 30 20:29 log.45827556._000033.job.log.1
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas       357 Jul 30 20:29 output.list
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas       620 Jul 30 20:29 runtime_log
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas   1914880 Jul 30 20:29 result.tar.gz
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas       785 Jul 30 20:29 ymsLDmx4P17nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmtmWLDmNyHTJo.diag
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas      8753 Jul 30 20:29 runtime_log.err
[2025-07-30 20:29:41] -rw-r--r--. 1 boincer umatlas     23156 Jul 30 20:29 stderr.txt
[2025-07-30 20:29:41] HITS file was successfully produced:
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas 206301922 Jul 30 20:27 shared/HITS.pool.root.1
[2025-07-30 20:29:41]  *** Contents of shared directory: ***
[2025-07-30 20:29:41] total 462888
[2025-07-30 20:29:41] -rw-r--r--. 3 boincer umatlas 265208858 Jul 30 13:48 ATLAS.root_0
[2025-07-30 20:29:41] -rw-r--r--. 2 boincer umatlas     15095 Jul 30 13:48 start_atlas.sh
[2025-07-30 20:29:41] -rw-r--r--. 2 boincer umatlas    542886 Jul 30 13:48 input.tar.gz
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas 206301922 Jul 30 20:27 HITS.pool.root.1
[2025-07-30 20:29:41] -rw-------. 1 boincer umatlas   1914880 Jul 30 20:29 result.tar.gz
20:29:43 (1640554): run_atlas exited; CPU time 52739.854007
20:29:43 (1640554): called boinc_finish(0)

</stderr_txt>
]]>

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