Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:53:51 (9463): wrapper (7.7.26015): starting
16:53:51 (9463): wrapper: running run_atlas (--nthreads 12)
[2025-07-29 16:53:51] Arguments: --nthreads 12
[2025-07-29 16:53:51] Threads: 12
[2025-07-29 16:53:51] Checking for CVMFS
[2025-07-29 16:53:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 16:53:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 16:53:51] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 16:53:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 16:53:51] 2.11.2.0 2945 115387 100116 148898 2 1 16447425 20275201 1 130560 0 40719750 99.972 10005816 11185 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-29 16:53:51] CVMFS is ok
[2025-07-29 16:53:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 16:53:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-29 16:53:51] Further information can be found at the LHC@home message board.
[2025-07-29 16:53:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 16:53:51] Checking for apptainer binary...
[2025-07-29 16:53:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 16:53:51] Running /usr/bin/apptainer --version
[2025-07-29 16:53:51] apptainer version 1.3.2-1.el7
[2025-07-29 16:53:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 16:53:53] c-205-2.aglt2.org
[2025-07-29 16:53:53] apptainer works
[2025-07-29 16:53:53] Set ATHENA_PROC_NUMBER=12
[2025-07-29 16:53:53] Set ATHENA_CORE_NUMBER=12
[2025-07-29 16:53:53] Starting ATLAS job with PandaID=6745102982
[2025-07-29 16:53:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 18:17:07]  *** The last 200 lines of the pilot log: ***
[2025-07-29 18:17:07]  lfn=log.45743349._035725.job.log.tgz.1
[2025-07-29 18:17:07]  mtime=0
[2025-07-29 18:17:07]  protocol_id=None
[2025-07-29 18:17:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-29 18:17:07]  replicas=None
[2025-07-29 18:17:07]  scope=mc23_13p6TeV
[2025-07-29 18:17:07]  status=None
[2025-07-29 18:17:07]  status_code=0
[2025-07-29 18:17:07]  storage_token=
[2025-07-29 18:17:07]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745102982/log.45743349._035725.job.log.tgz.1
[2025-07-29 18:17:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/8b/log.45743349._035725.job.log.tgz.1
[2025-07-29 18:17:07]  workdir=None
[2025-07-29 18:17:07] ]
[2025-07-29 18:17:07] 2025-07-29 22:16:25,529 | INFO     | transferring file log.45743349._035725.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745102982/log.45743349._035725.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-29 18:17:07] 2025-07-29 22:16:25,529 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745102982/log.45743349._035725.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._035725.job
[2025-07-29 18:17:07] 2025-07-29 22:16:25,553 | INFO     | adding to output.list: log.45743349._035725.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a2/8b/log.45743349._035725.job.log.tg
[2025-07-29 18:17:07] 2025-07-29 22:16:25,554 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-29 18:17:07] 2025-07-29 22:16:25,554 | INFO     | summary of transferred files:
[2025-07-29 18:17:07] 2025-07-29 22:16:25,554 | INFO     |  -- lfn=log.45743349._035725.job.log.tgz.1, status_code=0, status=transferred
[2025-07-29 18:17:07] 2025-07-29 22:16:25,554 | INFO     | stage-out finished correctly
[2025-07-29 18:17:07] 2025-07-29 22:16:26,412 | INFO     | monitor loop #370: job 0:6745102982 is in state 'finished'
[2025-07-29 18:17:07] 2025-07-29 22:16:26,412 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 18:17:07] 2025-07-29 22:16:28,230 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-29 18:17:07] 2025-07-29 22:16:28,315 | INFO     | job 6745102982 has state=finished
[2025-07-29 18:17:07] 2025-07-29 22:16:28,315 | INFO     | preparing for final server update for job 6745102982 in state='finished'
[2025-07-29 18:17:07] 2025-07-29 22:16:28,375 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-29 18:17:07] 2025-07-29 22:16:28,376 | INFO     | this job has now completed (state=finished)
[2025-07-29 18:17:07] 2025-07-29 22:16:28,376 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-29 18:17:07] 2025-07-29 22:16:28,376 | INFO     | log transfer has been attempted: DONE
[2025-07-29 18:17:07] 2025-07-29 22:16:28,376 | INFO     | job 6745102982 has finished - writing final server update
[2025-07-29 18:17:07] 2025-07-29 22:16:28,377 | INFO     | total number of processed events: 400 (read)
[2025-07-29 18:17:07] 2025-07-29 22:16:28,377 | INFO     | executing command: lscpu
[2025-07-29 18:17:07] 2025-07-29 22:16:28,404 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 18:17:07] 2025-07-29 22:16:28,919 | INFO     | monitor loop #371: job 0:6745102982 is in state 'finished'
[2025-07-29 18:17:07] 2025-07-29 22:16:28,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 18:17:07] 2025-07-29 22:16:31,422 | INFO     | monitor loop #372: job 0:6745102982 is in state 'finished'
[2025-07-29 18:17:07] 2025-07-29 22:16:31,422 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 18:17:07] 2025-07-29 22:16:33,461 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-29 18:17:07] 2025-07-29 22:16:33,465 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-29 18:17:07] 2025-07-29 22:16:33,467 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745102982/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 18:17:07] 2025-07-29 22:16:33,468 | INFO     | extracted standard info from prmon json
[2025-07-29 18:17:07] 2025-07-29 22:16:33,469 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 18:17:07] 2025-07-29 22:16:33,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 18:17:07] 2025-07-29 22:16:33,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 18:17:07] 2025-07-29 22:16:33,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 18:17:07] 2025-07-29 22:16:33,472 | INFO     | fitting pss+swap vs Time
[2025-07-29 18:17:07] 2025-07-29 22:16:33,472 | INFO     | sum of square deviations: 125630262.5
[2025-07-29 18:17:07] 2025-07-29 22:16:33,472 | INFO     | sum of deviations: -6781026021.0
[2025-07-29 18:17:07] 2025-07-29 22:16:33,473 | INFO     | mean x: 1753825010.5
[2025-07-29 18:17:07] 2025-07-29 22:16:33,473 | INFO     | mean y: 2738588.0
[2025-07-29 18:17:07] 2025-07-29 22:16:33,473 | INFO     | -- intersect: 94667294689.52927
[2025-07-29 18:17:07] 2025-07-29 22:16:33,473 | INFO     | intersect: 94667294689.52927
[2025-07-29 18:17:07] 2025-07-29 22:16:33,473 | INFO     | chi2: 0.06450077031743263
[2025-07-29 18:17:07] 2025-07-29 22:16:33,474 | INFO     | -- intersect: 94667294689.52927
[2025-07-29 18:17:07] 2025-07-29 22:16:33,474 | INFO     | current memory leak: -53.98 B/s (using 74 data points, chi2=0.06)
[2025-07-29 18:17:07] 2025-07-29 22:16:33,474 | INFO     | could have reported an average CPU frequency of 2048 MHz (6 samples)
[2025-07-29 18:17:07] 2025-07-29 22:16:33,474 | INFO     | ..............................
[2025-07-29 18:17:07] 2025-07-29 22:16:33,474 | INFO     | . Timing measurements:
[2025-07-29 18:17:07] 2025-07-29 22:16:33,475 | INFO     | . get job = 0 s
[2025-07-29 18:17:07] 2025-07-29 22:16:33,475 | INFO     | . initial setup = 2 s
[2025-07-29 18:17:07] 2025-07-29 22:16:33,475 | INFO     | . payload setup = 10 s
[2025-07-29 18:17:07] 2025-07-29 22:16:33,475 | INFO     | . stage-in = 0 s
[2025-07-29 18:17:07] 2025-07-29 22:16:33,475 | INFO     | . payload execution = 4906 s
[2025-07-29 18:17:07] 2025-07-29 22:16:33,475 | INFO     | . stage-out = 0 s
[2025-07-29 18:17:07] 2025-07-29 22:16:33,475 | INFO     | . log creation = 0 s
[2025-07-29 18:17:07] 2025-07-29 22:16:33,476 | INFO     | ..............................
[2025-07-29 18:17:07] 2025-07-29 22:16:34,002 | INFO     | 
[2025-07-29 18:17:07] 2025-07-29 22:16:34,003 | INFO     | job summary report
[2025-07-29 18:17:07] 2025-07-29 22:16:34,003 | INFO     | --------------------------------------------------
[2025-07-29 18:17:07] 2025-07-29 22:16:34,003 | INFO     | PanDA job id: 6745102982
[2025-07-29 18:17:07] 2025-07-29 22:16:34,003 | INFO     | task id: 45743349
[2025-07-29 18:17:07] 2025-07-29 22:16:34,003 | INFO     | errors: (none)
[2025-07-29 18:17:07] 2025-07-29 22:16:34,003 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 18:17:07] 2025-07-29 22:16:34,004 | INFO     | pilot state: finished 
[2025-07-29 18:17:07] 2025-07-29 22:16:34,004 | INFO     | transexitcode: 0
[2025-07-29 18:17:07] 2025-07-29 22:16:34,004 | INFO     | exeerrorcode: 0
[2025-07-29 18:17:07] 2025-07-29 22:16:34,004 | INFO     | exeerrordiag: 
[2025-07-29 18:17:07] 2025-07-29 22:16:34,004 | INFO     | exitcode: 0
[2025-07-29 18:17:07] 2025-07-29 22:16:34,004 | INFO     | exitmsg: OK
[2025-07-29 18:17:07] 2025-07-29 22:16:34,005 | INFO     | cpuconsumptiontime: 54188 s
[2025-07-29 18:17:07] 2025-07-29 22:16:34,005 | INFO     | nevents: 400
[2025-07-29 18:17:07] 2025-07-29 22:16:34,005 | INFO     | neventsw: 0
[2025-07-29 18:17:07] 2025-07-29 22:16:34,005 | INFO     | pid: 19608
[2025-07-29 18:17:07] 2025-07-29 22:16:34,005 | INFO     | pgrp: 19608
[2025-07-29 18:17:07] 2025-07-29 22:16:34,005 | INFO     | corecount: 12
[2025-07-29 18:17:07] 2025-07-29 22:16:34,006 | INFO     | event service: False
[2025-07-29 18:17:07] 2025-07-29 22:16:34,006 | INFO     | sizes: {0: 2391909, 1: 2391909, 5: 2392199, 11: 2392255, 4920: 2418500, 4922: 2427498, 4924: 2427682, 4930: 2427876}
[2025-07-29 18:17:07] 2025-07-29 22:16:34,006 | INFO     | --------------------------------------------------
[2025-07-29 18:17:07] 2025-07-29 22:16:34,006 | INFO     | 
[2025-07-29 18:17:07] 2025-07-29 22:16:34,006 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-29 18:17:07] 2025-07-29 22:16:34,033 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,033 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,033 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,033 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,034 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,034 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,034 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,034 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,034 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,034 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,034 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,035 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,035 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,035 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,035 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,035 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,036 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,036 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 18:17:07] 2025-07-29 22:16:34,036 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,036 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 18:17:07] 2025-07-29 22:16:34,036 | INFO     | job 6745102982 has completed (purged errors)
[2025-07-29 18:17:07] 2025-07-29 22:16:34,037 | INFO     | overall cleanup function is called
[2025-07-29 18:17:07] 2025-07-29 22:16:35,044 | INFO     | --- collectZombieJob: --- 10, [19608]
[2025-07-29 18:17:07] 2025-07-29 22:16:35,045 | INFO     | zombie collector waiting for pid 19608
[2025-07-29 18:17:07] 2025-07-29 22:16:35,045 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 18:17:07] 2025-07-29 22:16:35,045 | INFO     | collected zombie processes
[2025-07-29 18:17:07] 2025-07-29 22:16:35,045 | INFO     | will attempt to kill all subprocesses of pid=19608
[2025-07-29 18:17:07] 2025-07-29 22:16:35,135 | INFO     | process IDs to be killed: [19608] (in reverse order)
[2025-07-29 18:17:07] 2025-07-29 22:16:35,188 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 18:17:07] 2025-07-29 22:16:35,188 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 18:17:07] 2025-07-29 22:16:35,191 | INFO     | did not find any defunct processes belonging to 19608
[2025-07-29 18:17:07] 2025-07-29 22:16:35,193 | INFO     | did not find any defunct processes belonging to 19608
[2025-07-29 18:17:07] 2025-07-29 22:16:35,194 | INFO     | ready for new job
[2025-07-29 18:17:07] 2025-07-29 22:16:35,194 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 18:17:07] 2025-07-29 22:16:35,195 | INFO     | ***************************************
[2025-07-29 18:17:07] 2025-07-29 22:16:35,195 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 18:17:07] 2025-07-29 22:16:35,195 | INFO     | ***************************************
[2025-07-29 18:17:07] 2025-07-29 22:16:35,195 | INFO     | 
[2025-07-29 18:17:07] 2025-07-29 22:16:35,196 | INFO     | architecture information:
[2025-07-29 18:17:07] 2025-07-29 22:16:35,196 | INFO     | executing command: cat /etc/os-release
[2025-07-29 18:17:07] 2025-07-29 22:16:35,213 | INFO     | cat /etc/os-release:
[2025-07-29 18:17:07] NAME="CentOS Linux"
[2025-07-29 18:17:07] VERSION="7 (Core)"
[2025-07-29 18:17:07] ID="centos"
[2025-07-29 18:17:07] ID_LIKE="rhel fedora"
[2025-07-29 18:17:07] VERSION_ID="7"
[2025-07-29 18:17:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 18:17:07] ANSI_COLOR="0;31"
[2025-07-29 18:17:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 18:17:07] HOME_URL="https://www.centos.org/"
[2025-07-29 18:17:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 18:17:07] 
[2025-07-29 18:17:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 18:17:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 18:17:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 18:17:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 18:17:07] 
[2025-07-29 18:17:07] 2025-07-29 22:16:35,213 | INFO     | ***************************************
[2025-07-29 18:17:07] 2025-07-29 22:16:35,716 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-29 18:17:07] 2025-07-29 22:16:35,734 | INFO     | sufficient remaining disk space (29504831488 B)
[2025-07-29 18:17:07] 2025-07-29 22:16:35,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 18:17:07] 2025-07-29 22:16:35,734 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 18:17:07] 2025-07-29 22:16:35,735 | INFO     | update_server=False
[2025-07-29 18:17:07] 2025-07-29 22:16:35,735 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 18:17:07] 2025-07-29 22:16:35,735 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 18:17:07] 2025-07-29 22:16:35,735 | INFO     | aborting loop
[2025-07-29 18:17:07] 2025-07-29 22:16:35,785 | INFO     | all payload control threads have been joined
[2025-07-29 18:17:07] 2025-07-29 22:16:35,822 | INFO     | all data control threads have been joined
[2025-07-29 18:17:07] 2025-07-29 22:16:36,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 18:17:07] 2025-07-29 22:16:36,740 | INFO     | [job] retrieve thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:36,741 | INFO     | [job] job monitor thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:36,790 | INFO     | [payload] control thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:36,827 | INFO     | [data] control thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:36,832 | INFO     | all job control threads have been joined
[2025-07-29 18:17:07] 2025-07-29 22:16:36,853 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:36,939 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:37,490 | INFO     | [payload] failed_post thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:37,504 | INFO     | [data] copytool_in thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:37,837 | INFO     | [job] control thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:38,034 | INFO     | [payload] validate_post thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:38,115 | INFO     | [job] validate thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:38,123 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:38,161 | INFO     | [data] copytool_out thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:38,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 18:17:07] 2025-07-29 22:16:38,823 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 18:17:07] 2025-07-29 22:16:39,577 | INFO     | [job] queue monitor thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:42,829 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:46,343 | INFO     | job.realtimelogging is not enabled
[2025-07-29 18:17:07] 2025-07-29 22:16:47,348 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 18:17:07] 2025-07-29 22:16:49,329 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139995002222400)>', '<ExcThread(monitor, started 139994551265024)>']
[2025-07-29 18:17:07] 2025-07-29 22:16:54,352 | INFO     | all workflow threads have been joined
[2025-07-29 18:17:07] 2025-07-29 22:16:54,352 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 18:17:07] 2025-07-29 22:16:54,362 | INFO     | traces error code: 0
[2025-07-29 18:17:07] 2025-07-29 22:16:54,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 18:17:07] 2025-07-29 22:17:06,855 | INFO     | PID=13193 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-29 18:17:07] 2025-07-29 22:17:06,855 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 18:17:07] 2025-07-29 22:17:06,855 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 18:17:07] 2025-07-29 22:17:06,855 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 18:17:07] 2025-07-29 22:17:06,855 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 18:17:07] 2025-07-29 22:17:06,855 | INFO     | [monitor] control thread has ended
[2025-07-29 18:17:07] 2025-07-29 22:17:06,950 [wrapper] ==== pilot stdout END ====
[2025-07-29 18:17:07] 2025-07-29 22:17:06,954 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 18:17:07] 2025-07-29 22:17:06,958 [wrapper] pilotpid: 13193
[2025-07-29 18:17:07] 2025-07-29 22:17:06,962 [wrapper] Pilot exit status: 0
[2025-07-29 18:17:07] 2025-07-29 22:17:06,977 [wrapper] pandaids: 6745102982
[2025-07-29 18:17:07] 2025-07-29 22:17:07,019 [wrapper] cleanup supervisor_pilot  5188 13194
[2025-07-29 18:17:07] 2025-07-29 22:17:07,023 [wrapper] Test setup, not cleaning
[2025-07-29 18:17:07] 2025-07-29 22:17:07,027 [wrapper] apfmon messages muted
[2025-07-29 18:17:07] 2025-07-29 22:17:07,031 [wrapper] ==== wrapper stdout END ====
[2025-07-29 18:17:07] 2025-07-29 22:17:07,035 [wrapper] ==== wrapper stderr END ====
[2025-07-29 18:17:07]  *** Error codes and diagnostics ***
[2025-07-29 18:17:07]     "exeErrorCode": 0,
[2025-07-29 18:17:07]     "exeErrorDiag": "",
[2025-07-29 18:17:07]     "pilotErrorCode": 0,
[2025-07-29 18:17:07]     "pilotErrorDiag": "",
[2025-07-29 18:17:07]  *** Listing of results directory ***
[2025-07-29 18:17:07] total 392756
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 05:28 pilot3.tar.gz
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 05:42 queuedata.json
[2025-07-29 18:17:07] -rwx------ 1 boincer umatlas     36292 Jul 26 05:44 runpilot2-wrapper.sh
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas       100 Jul 29 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 18:17:07] -rwxr-xr-x 1 boincer umatlas      7986 Jul 29 16:53 run_atlas
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas       105 Jul 29 16:53 job.xml
[2025-07-29 18:17:07] -rw-r--r-- 2 boincer umatlas 186611249 Jul 29 16:53 EVNT.45743347._002034.pool.root.1
[2025-07-29 18:17:07] -rw-r--r-- 2 boincer umatlas     15095 Jul 29 16:53 start_atlas.sh
[2025-07-29 18:17:07] drwxrwx--x 2 boincer umatlas      4096 Jul 29 16:53 shared
[2025-07-29 18:17:07] -rw-r--r-- 2 boincer umatlas    542891 Jul 29 16:53 input.tar.gz
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas         0 Jul 29 16:53 boinc_lockfile
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas      2563 Jul 29 16:53 pandaJob.out
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas    977324 Jul 29 16:54 agis_schedconf.cvmfs.json
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas   1589827 Jul 29 16:54 agis_ddmendpoints.agis.ALL.json
[2025-07-29 18:17:07] drwx------ 4 boincer umatlas      4096 Jul 29 16:54 pilot3
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas      5867 Jul 29 18:09 init_data.xml
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas 210019199 Jul 29 18:15 HITS.45743349._035725.pool.root.1
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas       529 Jul 29 18:16 boinc_task_state.xml
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas        95 Jul 29 18:16 pilot_heartbeat.json
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas      1045 Jul 29 18:16 memory_monitor_summary.json
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas    370881 Jul 29 18:16 log.45743349._035725.job.log.tgz.1
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas      7846 Jul 29 18:16 heartbeat.json
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas      8192 Jul 29 18:16 boinc_mmap_file
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas        27 Jul 29 18:16 wrapper_checkpoint.txt
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas       745 Jul 29 18:17 pilotlog.txt
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas    470372 Jul 29 18:17 log.45743349._035725.job.log.1
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas       357 Jul 29 18:17 output.list
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas       620 Jul 29 18:17 runtime_log
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas    860160 Jul 29 18:17 result.tar.gz
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas      8657 Jul 29 18:17 runtime_log.err
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas       659 Jul 29 18:17 b4HKDmHdqz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGmRLDmn1tiTo.diag
[2025-07-29 18:17:07] -rw-r--r-- 1 boincer umatlas     21646 Jul 29 18:17 stderr.txt
[2025-07-29 18:17:07] HITS file was successfully produced:
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas 210019199 Jul 29 18:15 shared/HITS.pool.root.1
[2025-07-29 18:17:07]  *** Contents of shared directory: ***
[2025-07-29 18:17:07] total 388732
[2025-07-29 18:17:07] -rw-r--r-- 2 boincer umatlas 186611249 Jul 29 16:53 ATLAS.root_0
[2025-07-29 18:17:07] -rw-r--r-- 2 boincer umatlas     15095 Jul 29 16:53 start_atlas.sh
[2025-07-29 18:17:07] -rw-r--r-- 2 boincer umatlas    542891 Jul 29 16:53 input.tar.gz
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas 210019199 Jul 29 18:15 HITS.pool.root.1
[2025-07-29 18:17:07] -rw------- 1 boincer umatlas    860160 Jul 29 18:17 result.tar.gz
18:17:08 (9463): run_atlas exited; CPU time 54161.077565
18:17:08 (9463): called boinc_finish(0)

</stderr_txt>
]]>

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