Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:52:17 (3117855): wrapper (7.7.26015): starting
09:52:17 (3117855): wrapper: running run_atlas (--nthreads 12)
[2025-07-29 09:52:17] Arguments: --nthreads 12
[2025-07-29 09:52:17] Threads: 12
[2025-07-29 09:52:17] Checking for CVMFS
[2025-07-29 09:52:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 09:52:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 09:52:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 09:52:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 09:52:20] 2.12.6.0 2794239 21329 338612 148888 3 490 26299640 40960000 14355 16776704 1 50488230 99.744 54139068 24014 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-29 09:52:20] CVMFS is ok
[2025-07-29 09:52:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 09:52:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-29 09:52:20] Further information can be found at the LHC@home message board.
[2025-07-29 09:52:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 09:52:20] Checking for apptainer binary...
[2025-07-29 09:52:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 09:52:20] Running /usr/bin/apptainer --version
[2025-07-29 09:52:20] apptainer version 1.4.1-1.el9
[2025-07-29 09:52:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 09:52:21] c6-8-12-4.aglt2.org
[2025-07-29 09:52:21] apptainer works
[2025-07-29 09:52:21] Set ATHENA_PROC_NUMBER=12
[2025-07-29 09:52:21] Set ATHENA_CORE_NUMBER=12
[2025-07-29 09:52:21] Starting ATLAS job with PandaID=6746741972
[2025-07-29 09:52:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 14:07:30]  *** The last 200 lines of the pilot log: ***
[2025-07-29 14:07:31] 2025-07-29 18:06:56,245 | INFO     | PID=3122794 has CPU usage=11.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-29 14:07:31] 2025-07-29 18:06:56,245 | INFO     | .. there are 13 such processes running
[2025-07-29 14:07:31] 2025-07-29 18:06:58,106 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-29 14:07:31] 2025-07-29 18:06:58,114 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3057.321410714286
[2025-07-29 14:07:31] 2025-07-29 18:06:58,123 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746741972/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,124 | INFO     | extracted standard info from prmon json
[2025-07-29 14:07:31] 2025-07-29 18:06:58,124 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 14:07:31] 2025-07-29 18:06:58,124 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 14:07:31] 2025-07-29 18:06:58,125 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 14:07:31] 2025-07-29 18:06:58,125 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 14:07:31] 2025-07-29 18:06:58,129 | INFO     | fitting pss+swap vs Time
[2025-07-29 14:07:31] 2025-07-29 18:06:58,130 | INFO     | sum of square deviations: 4729326770.967744
[2025-07-29 14:07:31] 2025-07-29 18:06:58,131 | INFO     | sum of deviations: 44240147284.96776
[2025-07-29 14:07:31] 2025-07-29 18:06:58,131 | INFO     | mean x: 1753804817.064516
[2025-07-29 14:07:31] 2025-07-29 18:06:58,131 | INFO     | mean y: 2328968.939516129
[2025-07-29 14:07:31] 2025-07-29 18:06:58,131 | INFO     | -- intersect: -16403512110.242983
[2025-07-29 14:07:31] 2025-07-29 18:06:58,131 | INFO     | intersect: -16403512110.242983
[2025-07-29 14:07:31] 2025-07-29 18:06:58,132 | INFO     | chi2: 2.273375821194418
[2025-07-29 14:07:31] 2025-07-29 18:06:58,132 | INFO     | sum of square deviations: 4449029329.341587
[2025-07-29 14:07:31] 2025-07-29 18:06:58,133 | INFO     | sum of deviations: 46082020153.87248
[2025-07-29 14:07:31] 2025-07-29 18:06:58,134 | INFO     | mean x: 1753804664.5761316
[2025-07-29 14:07:31] 2025-07-29 18:06:58,134 | INFO     | mean y: 2329950.7366255145
[2025-07-29 14:07:31] 2025-07-29 18:06:58,134 | INFO     | -- intersect: -18163174458.494423
[2025-07-29 14:07:31] 2025-07-29 18:06:58,134 | INFO     | intersect: -18163174458.494423
[2025-07-29 14:07:31] 2025-07-29 18:06:58,134 | INFO     | chi2: 2.2610875716903407
[2025-07-29 14:07:31] 2025-07-29 18:06:58,134 | INFO     | current chi2=2.2610875716903407 (change=0.5405287321838886 %)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,134 | INFO     | right removable region: 242
[2025-07-29 14:07:31] 2025-07-29 18:06:58,135 | INFO     | sum of square deviations: 4448943929.341587
[2025-07-29 14:07:31] 2025-07-29 18:06:58,136 | INFO     | sum of deviations: -4157315259.415642
[2025-07-29 14:07:31] 2025-07-29 18:06:58,136 | INFO     | mean x: 1753804969.5761316
[2025-07-29 14:07:31] 2025-07-29 18:06:58,136 | INFO     | mean y: 2355152.238683128
[2025-07-29 14:07:31] 2025-07-29 18:06:58,136 | INFO     | -- intersect: 1641198050.2063527
[2025-07-29 14:07:31] 2025-07-29 18:06:58,136 | INFO     | intersect: 1641198050.2063527
[2025-07-29 14:07:31] 2025-07-29 18:06:58,136 | INFO     | chi2: 0.3160085633607748
[2025-07-29 14:07:31] 2025-07-29 18:06:58,137 | INFO     | current chi2=0.3160085633607748 (change=86.09958985159146 %)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,137 | INFO     | sum of square deviations: 4179892905.4831834
[2025-07-29 14:07:31] 2025-07-29 18:06:58,138 | INFO     | sum of deviations: -1670428507.3235345
[2025-07-29 14:07:31] 2025-07-29 18:06:58,138 | INFO     | mean x: 1753805122.0798318
[2025-07-29 14:07:31] 2025-07-29 18:06:58,138 | INFO     | mean y: 2353696.911764706
[2025-07-29 14:07:31] 2025-07-29 18:06:58,138 | INFO     | -- intersect: 703234350.6646696
[2025-07-29 14:07:31] 2025-07-29 18:06:58,138 | INFO     | intersect: 703234350.6646696
[2025-07-29 14:07:31] 2025-07-29 18:06:58,139 | INFO     | chi2: 0.2709220227954216
[2025-07-29 14:07:31] 2025-07-29 18:06:58,139 | INFO     | current chi2=0.2709220227954216 (change=14.267505945362515 %)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,139 | INFO     | left removable region: 20
[2025-07-29 14:07:31] 2025-07-29 18:06:58,139 | INFO     | sum of square deviations: 3392296037.3738728
[2025-07-29 14:07:31] 2025-07-29 18:06:58,140 | INFO     | sum of deviations: 15398822897.554045
[2025-07-29 14:07:31] 2025-07-29 18:06:58,140 | INFO     | mean x: 1753805244.0855856
[2025-07-29 14:07:31] 2025-07-29 18:06:58,140 | INFO     | mean y: 2346084.391891892
[2025-07-29 14:07:31] 2025-07-29 18:06:58,141 | INFO     | -- intersect: -7958791756.4501
[2025-07-29 14:07:31] 2025-07-29 18:06:58,141 | INFO     | intersect: -7958791756.4501
[2025-07-29 14:07:31] 2025-07-29 18:06:58,141 | INFO     | chi2: 0.07300672674813852
[2025-07-29 14:07:31] 2025-07-29 18:06:58,141 | INFO     | -- intersect: -7958791756.4501
[2025-07-29 14:07:31] 2025-07-29 18:06:58,141 | INFO     | current memory leak: 4.54 B/s (using 222 data points, chi2=0.07)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | could have reported an average CPU frequency of 2983 MHz (12 samples)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | ..............................
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . Timing measurements:
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . get job = 0 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . initial setup = 4 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . payload setup = 29 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . stage-in = 0 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . payload execution = 15145 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . stage-out = 2 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | . log creation = 0 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,142 | INFO     | ..............................
[2025-07-29 14:07:31] 2025-07-29 18:06:58,342 | INFO     | 
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | job summary report
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | --------------------------------------------------
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | PanDA job id: 6746741972
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | task id: 45759704
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | errors: (none)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | pilot state: finished 
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | transexitcode: 0
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | exeerrorcode: 0
[2025-07-29 14:07:31] 2025-07-29 18:06:58,343 | INFO     | exeerrordiag: 
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | exitcode: 0
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | exitmsg: OK
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | cpuconsumptiontime: 47850 s
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | nevents: 400
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | neventsw: 0
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | pid: 3130365
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | pgrp: 3130365
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | corecount: 12
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | event service: False
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | sizes: {0: 2391733, 1: 2391932, 12: 2391932, 23: 2392250, 33: 2392250, 15178: 2423227, 15179: 2423354, 15182: 2432408, 15184: 2432464, 15190: 2432658}
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | --------------------------------------------------
[2025-07-29 14:07:31] 2025-07-29 18:06:58,344 | INFO     | 
[2025-07-29 14:07:31] 2025-07-29 18:06:58,345 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-29 14:07:31] 2025-07-29 18:06:58,366 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,367 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | job 6746741972 has completed (purged errors)
[2025-07-29 14:07:31] 2025-07-29 18:06:58,368 | INFO     | overall cleanup function is called
[2025-07-29 14:07:31] 2025-07-29 18:06:59,376 | INFO     | --- collectZombieJob: --- 10, [3130365]
[2025-07-29 14:07:31] 2025-07-29 18:06:59,377 | INFO     | zombie collector waiting for pid 3130365
[2025-07-29 14:07:31] 2025-07-29 18:06:59,377 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 14:07:31] 2025-07-29 18:06:59,377 | INFO     | collected zombie processes
[2025-07-29 14:07:31] 2025-07-29 18:06:59,377 | INFO     | will attempt to kill all subprocesses of pid=3130365
[2025-07-29 14:07:31] 2025-07-29 18:06:59,668 | INFO     | process IDs to be killed: [3130365] (in reverse order)
[2025-07-29 14:07:31] 2025-07-29 18:06:59,767 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 14:07:31] 2025-07-29 18:06:59,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 14:07:31] 2025-07-29 18:06:59,778 | INFO     | did not find any defunct processes belonging to 3130365
[2025-07-29 14:07:31] 2025-07-29 18:06:59,788 | INFO     | did not find any defunct processes belonging to 3130365
[2025-07-29 14:07:31] 2025-07-29 18:06:59,789 | INFO     | ready for new job
[2025-07-29 14:07:31] 2025-07-29 18:06:59,789 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 14:07:31] 2025-07-29 18:06:59,791 | INFO     | ***************************************
[2025-07-29 14:07:31] 2025-07-29 18:06:59,791 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 14:07:31] 2025-07-29 18:06:59,791 | INFO     | ***************************************
[2025-07-29 14:07:31] 2025-07-29 18:06:59,791 | INFO     | 
[2025-07-29 14:07:31] 2025-07-29 18:06:59,806 | INFO     | architecture information:
[2025-07-29 14:07:31] 2025-07-29 18:06:59,807 | INFO     | executing command: cat /etc/os-release
[2025-07-29 14:07:31] 2025-07-29 18:06:59,824 | INFO     | cat /etc/os-release:
[2025-07-29 14:07:31] NAME="CentOS Linux"
[2025-07-29 14:07:31] VERSION="7 (Core)"
[2025-07-29 14:07:31] ID="centos"
[2025-07-29 14:07:31] ID_LIKE="rhel fedora"
[2025-07-29 14:07:31] VERSION_ID="7"
[2025-07-29 14:07:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 14:07:31] ANSI_COLOR="0;31"
[2025-07-29 14:07:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 14:07:31] HOME_URL="https://www.centos.org/"
[2025-07-29 14:07:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 14:07:31] 
[2025-07-29 14:07:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 14:07:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 14:07:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 14:07:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 14:07:31] 
[2025-07-29 14:07:31] 2025-07-29 18:06:59,824 | INFO     | ***************************************
[2025-07-29 14:07:31] 2025-07-29 18:07:00,327 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-29 14:07:31] 2025-07-29 18:07:00,344 | INFO     | sufficient remaining disk space (56218353664 B)
[2025-07-29 14:07:31] 2025-07-29 18:07:00,344 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 14:07:31] 2025-07-29 18:07:00,345 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 14:07:31] 2025-07-29 18:07:00,345 | INFO     | update_server=False
[2025-07-29 14:07:31] 2025-07-29 18:07:00,345 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 14:07:31] 2025-07-29 18:07:00,345 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 14:07:31] 2025-07-29 18:07:00,677 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-29 14:07:31] 2025-07-29 18:07:00,678 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-29 14:07:31] 2025-07-29 18:07:00,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 14:07:31] 2025-07-29 18:07:00,678 | INFO     | will abort loop
[2025-07-29 14:07:31] 2025-07-29 18:07:01,242 | INFO     | all data control threads have been joined
[2025-07-29 14:07:31] 2025-07-29 18:07:01,350 | INFO     | [job] retrieve thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:01,482 | INFO     | all payload control threads have been joined
[2025-07-29 14:07:31] 2025-07-29 18:07:01,523 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:01,605 | INFO     | all job control threads have been joined
[2025-07-29 14:07:31] 2025-07-29 18:07:01,684 | INFO     | [job] job monitor thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:01,860 | INFO     | [payload] failed_post thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,248 | INFO     | [data] control thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,351 | INFO     | [data] copytool_out thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,357 | INFO     | [job] validate thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,415 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,431 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,443 | INFO     | [payload] validate_post thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,488 | INFO     | [payload] control thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,523 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,610 | INFO     | [job] control thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,649 | INFO     | [data] copytool_in thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:02,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 14:07:31] 2025-07-29 18:07:03,241 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 14:07:31] 2025-07-29 18:07:04,246 | INFO     | [job] queue monitor thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:06,915 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 14:07:31] 2025-07-29 18:07:08,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139680155330368)>', '<ExcThread(monitor, started 139679802300160)>']
[2025-07-29 14:07:31] 2025-07-29 18:07:13,092 | INFO     | all workflow threads have been joined
[2025-07-29 14:07:31] 2025-07-29 18:07:13,093 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 14:07:31] 2025-07-29 18:07:13,094 | INFO     | traces error code: 0
[2025-07-29 14:07:31] 2025-07-29 18:07:13,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 14:07:31] 2025-07-29 18:07:30,650 | INFO     | PID=3122794 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 14:07:31] 2025-07-29 18:07:30,651 | INFO     | .. there are 13 such processes running
[2025-07-29 14:07:31] 2025-07-29 18:07:30,652 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 14:07:31] 2025-07-29 18:07:30,652 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 14:07:31] 2025-07-29 18:07:30,652 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 14:07:31] 2025-07-29 18:07:30,652 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 14:07:31] 2025-07-29 18:07:30,652 | INFO     | [monitor] control thread has ended
[2025-07-29 14:07:31] 2025-07-29 18:07:30,842 [wrapper] ==== pilot stdout END ====
[2025-07-29 14:07:31] 2025-07-29 18:07:30,845 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 14:07:31] 2025-07-29 18:07:30,849 [wrapper] pilotpid: 3122794
[2025-07-29 14:07:31] 2025-07-29 18:07:30,851 [wrapper] Pilot exit status: 0
[2025-07-29 14:07:31] 2025-07-29 18:07:30,863 [wrapper] pandaids: 6746741972
[2025-07-29 14:07:31] 2025-07-29 18:07:30,928 [wrapper] cleanup supervisor_pilot 3818322 3122795
[2025-07-29 14:07:31] 2025-07-29 18:07:30,933 [wrapper] Test setup, not cleaning
[2025-07-29 14:07:31] 2025-07-29 18:07:30,936 [wrapper] apfmon messages muted
[2025-07-29 14:07:31] 2025-07-29 18:07:30,939 [wrapper] ==== wrapper stdout END ====
[2025-07-29 14:07:31] 2025-07-29 18:07:30,942 [wrapper] ==== wrapper stderr END ====
[2025-07-29 14:07:31]  *** Error codes and diagnostics ***
[2025-07-29 14:07:31]     "exeErrorCode": 0,
[2025-07-29 14:07:31]     "exeErrorDiag": "",
[2025-07-29 14:07:31]     "pilotErrorCode": 0,
[2025-07-29 14:07:31]     "pilotErrorDiag": "",
[2025-07-29 14:07:31]  *** Listing of results directory ***
[2025-07-29 14:07:31] total 406240
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 04:38 pilot3.tar.gz
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 04:54 queuedata.json
[2025-07-29 14:07:31] -rwx------. 1 boincer umatlas     36292 Jul 27 04:54 runpilot2-wrapper.sh
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas       100 Jul 29 09:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 14:07:31] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 29 09:52 run_atlas
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas       105 Jul 29 09:52 job.xml
[2025-07-29 14:07:31] -rw-r--r--. 2 boincer umatlas 238520541 Jul 29 09:52 EVNT.45759700._000001.pool.root.1
[2025-07-29 14:07:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 29 09:52 start_atlas.sh
[2025-07-29 14:07:31] drwxrwx--x. 2 boincer umatlas      4096 Jul 29 09:52 shared
[2025-07-29 14:07:31] -rw-r--r--. 2 boincer umatlas    542888 Jul 29 09:52 input.tar.gz
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas         0 Jul 29 09:52 boinc_lockfile
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas      2566 Jul 29 09:52 pandaJob.out
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas    977316 Jul 29 09:52 agis_schedconf.cvmfs.json
[2025-07-29 14:07:31] drwx------. 4 boincer umatlas      4096 Jul 29 09:52 pilot3
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas      6840 Jul 29 14:01 init_data.xml
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas       531 Jul 29 14:06 boinc_task_state.xml
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas 170196111 Jul 29 14:06 HITS.45759704._000006.pool.root.1
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas      1040 Jul 29 14:06 memory_monitor_summary.json
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas   1589827 Jul 29 14:06 agis_ddmendpoints.agis.ALL.json
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas    453275 Jul 29 14:06 log.45759704._000006.job.log.tgz.1
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas      7813 Jul 29 14:06 heartbeat.json
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas        28 Jul 29 14:07 wrapper_checkpoint.txt
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas      8192 Jul 29 14:07 boinc_mmap_file
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas        95 Jul 29 14:07 pilot_heartbeat.json
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas       823 Jul 29 14:07 pilotlog.txt
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas   1252568 Jul 29 14:07 log.45759704._000006.job.log.1
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas       357 Jul 29 14:07 output.list
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas       620 Jul 29 14:07 runtime_log
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas   1720320 Jul 29 14:07 result.tar.gz
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas      8668 Jul 29 14:07 runtime_log.err
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas       659 Jul 29 14:07 ByYMDmBKC07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrnULDmLUuf9m.diag
[2025-07-29 14:07:31] -rw-r--r--. 1 boincer umatlas     21322 Jul 29 14:07 stderr.txt
[2025-07-29 14:07:31] HITS file was successfully produced:
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas 170196111 Jul 29 14:06 shared/HITS.pool.root.1
[2025-07-29 14:07:31]  *** Contents of shared directory: ***
[2025-07-29 14:07:31] total 401372
[2025-07-29 14:07:31] -rw-r--r--. 2 boincer umatlas 238520541 Jul 29 09:52 ATLAS.root_0
[2025-07-29 14:07:31] -rw-r--r--. 2 boincer umatlas     15095 Jul 29 09:52 start_atlas.sh
[2025-07-29 14:07:31] -rw-r--r--. 2 boincer umatlas    542888 Jul 29 09:52 input.tar.gz
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas 170196111 Jul 29 14:06 HITS.pool.root.1
[2025-07-29 14:07:31] -rw-------. 1 boincer umatlas   1720320 Jul 29 14:07 result.tar.gz
14:07:32 (3117855): run_atlas exited; CPU time 48206.364492
14:07:32 (3117855): called boinc_finish(0)

</stderr_txt>
]]>

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