Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:19:57 (3622681): wrapper (7.7.26015): starting
09:19:57 (3622681): wrapper: running run_atlas (--nthreads 12)
[2025-07-29 09:19:57] Arguments: --nthreads 12
[2025-07-29 09:19:57] Threads: 12
[2025-07-29 09:19:57] Checking for CVMFS
[2025-07-29 09:19:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 09:19:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 09:19:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 09:19:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 09:19:58] 2.12.6.0 951823 21294 366456 148888 2 15 31044705 40960001 15820 16776704 0 47816250 99.673 64284364 28113 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-29 09:19:58] CVMFS is ok
[2025-07-29 09:19:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 09:19:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-29 09:19:58] Further information can be found at the LHC@home message board.
[2025-07-29 09:19:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 09:19:58] Checking for apptainer binary...
[2025-07-29 09:19:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 09:19:58] Running /usr/bin/apptainer --version
[2025-07-29 09:19:58] apptainer version 1.4.1-1.el9
[2025-07-29 09:19:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 09:19:58] c6-8-12-3.aglt2.org
[2025-07-29 09:19:58] apptainer works
[2025-07-29 09:19:58] Set ATHENA_PROC_NUMBER=12
[2025-07-29 09:19:58] Set ATHENA_CORE_NUMBER=12
[2025-07-29 09:19:58] Starting ATLAS job with PandaID=6741690054
[2025-07-29 09:19:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 13:15:09]  *** The last 200 lines of the pilot log: ***
[2025-07-29 13:15:09] 2025-07-29 17:14:30,999 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 13:15:09] 2025-07-29 17:14:33,507 | INFO     | monitor loop #873: job 0:6741690054 is in state 'finished'
[2025-07-29 13:15:09] 2025-07-29 17:14:33,511 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,712 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-29 13:15:09] 2025-07-29 17:14:34,719 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2901.744946428571
[2025-07-29 13:15:09] 2025-07-29 17:14:34,731 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6741690054/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,732 | INFO     | extracted standard info from prmon json
[2025-07-29 13:15:09] 2025-07-29 17:14:34,732 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 13:15:09] 2025-07-29 17:14:34,732 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 13:15:09] 2025-07-29 17:14:34,733 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 13:15:09] 2025-07-29 17:14:34,733 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 13:15:09] 2025-07-29 17:14:34,738 | INFO     | fitting pss+swap vs Time
[2025-07-29 13:15:09] 2025-07-29 17:14:34,738 | INFO     | sum of square deviations: 3723586212.6288123
[2025-07-29 13:15:09] 2025-07-29 17:14:34,741 | INFO     | sum of deviations: -28991488121.7249
[2025-07-29 13:15:09] 2025-07-29 17:14:34,741 | INFO     | mean x: 1753802286.606987
[2025-07-29 13:15:09] 2025-07-29 17:14:34,741 | INFO     | mean y: 2429088.7030567685
[2025-07-29 13:15:09] 2025-07-29 17:14:34,742 | INFO     | -- intersect: 13657366897.736397
[2025-07-29 13:15:09] 2025-07-29 17:14:34,742 | INFO     | intersect: 13657366897.736397
[2025-07-29 13:15:09] 2025-07-29 17:14:34,742 | INFO     | chi2: 3.0013032429365354
[2025-07-29 13:15:09] 2025-07-29 17:14:34,743 | INFO     | sum of square deviations: 3484973060.2098193
[2025-07-29 13:15:09] 2025-07-29 17:14:34,744 | INFO     | sum of deviations: -12370893621.937492
[2025-07-29 13:15:09] 2025-07-29 17:14:34,744 | INFO     | mean x: 1753802134.111607
[2025-07-29 13:15:09] 2025-07-29 17:14:34,745 | INFO     | mean y: 2439561.4375
[2025-07-29 13:15:09] 2025-07-29 17:14:34,745 | INFO     | -- intersect: 6228054296.523971
[2025-07-29 13:15:09] 2025-07-29 17:14:34,745 | INFO     | intersect: 6228054296.523971
[2025-07-29 13:15:09] 2025-07-29 17:14:34,745 | INFO     | chi2: 2.3324694310607574
[2025-07-29 13:15:09] 2025-07-29 17:14:34,745 | INFO     | current chi2=2.3324694310607574 (change=22.284779568670892 %)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,745 | INFO     | right removable region: 223
[2025-07-29 13:15:09] 2025-07-29 17:14:34,746 | INFO     | sum of square deviations: 3484916085.7455206
[2025-07-29 13:15:09] 2025-07-29 17:14:34,748 | INFO     | sum of deviations: -69645929627.90176
[2025-07-29 13:15:09] 2025-07-29 17:14:34,748 | INFO     | mean x: 1753802439.1205356
[2025-07-29 13:15:09] 2025-07-29 17:14:34,748 | INFO     | mean y: 2454869.848214286
[2025-07-29 13:15:09] 2025-07-29 17:14:34,748 | INFO     | -- intersect: 35052137057.56179
[2025-07-29 13:15:09] 2025-07-29 17:14:34,748 | INFO     | intersect: 35052137057.56179
[2025-07-29 13:15:09] 2025-07-29 17:14:34,749 | INFO     | chi2: 1.2362370278617592
[2025-07-29 13:15:09] 2025-07-29 17:14:34,749 | INFO     | current chi2=1.2362370278617592 (change=58.80999260000799 %)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,749 | INFO     | sum of square deviations: 3256664758.776247
[2025-07-29 13:15:09] 2025-07-29 17:14:34,751 | INFO     | sum of deviations: -72036138497.26492
[2025-07-29 13:15:09] 2025-07-29 17:14:34,751 | INFO     | mean x: 1753802591.6347032
[2025-07-29 13:15:09] 2025-07-29 17:14:34,751 | INFO     | mean y: 2456416.771689498
[2025-07-29 13:15:09] 2025-07-29 17:14:34,751 | INFO     | -- intersect: 38795877215.58096
[2025-07-29 13:15:09] 2025-07-29 17:14:34,751 | INFO     | intersect: 38795877215.58096
[2025-07-29 13:15:09] 2025-07-29 17:14:34,751 | INFO     | chi2: 1.1700777009131416
[2025-07-29 13:15:09] 2025-07-29 17:14:34,752 | INFO     | current chi2=1.1700777009131416 (change=5.3516700646840505 %)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,752 | INFO     | left removable region: 20
[2025-07-29 13:15:09] 2025-07-29 17:14:34,752 | INFO     | sum of square deviations: 2593733832.7487755
[2025-07-29 13:15:09] 2025-07-29 17:14:34,754 | INFO     | sum of deviations: -40509823502.034454
[2025-07-29 13:15:09] 2025-07-29 17:14:34,754 | INFO     | mean x: 1753802713.640394
[2025-07-29 13:15:09] 2025-07-29 17:14:34,754 | INFO     | mean y: 2457132.9310344825
[2025-07-29 13:15:09] 2025-07-29 17:14:34,755 | INFO     | -- intersect: 27393948692.289833
[2025-07-29 13:15:09] 2025-07-29 17:14:34,755 | INFO     | intersect: 27393948692.289833
[2025-07-29 13:15:09] 2025-07-29 17:14:34,755 | INFO     | chi2: 0.45402871345383927
[2025-07-29 13:15:09] 2025-07-29 17:14:34,755 | INFO     | -- intersect: 27393948692.289833
[2025-07-29 13:15:09] 2025-07-29 17:14:34,755 | INFO     | current memory leak: -15.62 B/s (using 203 data points, chi2=0.45)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | could have reported an average CPU frequency of 2897 MHz (11 samples)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | ..............................
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . Timing measurements:
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . get job = 0 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . initial setup = 3 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . payload setup = 29 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . stage-in = 0 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . payload execution = 13947 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . stage-out = 3 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,756 | INFO     | . log creation = 0 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,757 | INFO     | ..............................
[2025-07-29 13:15:09] 2025-07-29 17:14:34,954 | INFO     | 
[2025-07-29 13:15:09] 2025-07-29 17:14:34,954 | INFO     | job summary report
[2025-07-29 13:15:09] 2025-07-29 17:14:34,954 | INFO     | --------------------------------------------------
[2025-07-29 13:15:09] 2025-07-29 17:14:34,954 | INFO     | PanDA job id: 6741690054
[2025-07-29 13:15:09] 2025-07-29 17:14:34,954 | INFO     | task id: 45697523
[2025-07-29 13:15:09] 2025-07-29 17:14:34,954 | INFO     | errors: (none)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,954 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | pilot state: finished 
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | transexitcode: 0
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | exeerrorcode: 0
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | exeerrordiag: 
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | exitcode: 0
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | exitmsg: OK
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | cpuconsumptiontime: 56667 s
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | nevents: 400
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | neventsw: 0
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | pid: 3638507
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | pgrp: 3638507
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | corecount: 12
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | event service: False
[2025-07-29 13:15:09] 2025-07-29 17:14:34,955 | INFO     | sizes: {0: 2391827, 1: 2392026, 12: 2392026, 18: 2392316, 22: 2392344, 13980: 2422877, 13985: 2431875, 13986: 2431931, 13996: 2432153}
[2025-07-29 13:15:09] 2025-07-29 17:14:34,956 | INFO     | --------------------------------------------------
[2025-07-29 13:15:09] 2025-07-29 17:14:34,956 | INFO     | 
[2025-07-29 13:15:09] 2025-07-29 17:14:34,956 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-29 13:15:09] 2025-07-29 17:14:34,978 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,979 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | job 6741690054 has completed (purged errors)
[2025-07-29 13:15:09] 2025-07-29 17:14:34,980 | INFO     | overall cleanup function is called
[2025-07-29 13:15:09] 2025-07-29 17:14:35,990 | INFO     | --- collectZombieJob: --- 10, [3638507]
[2025-07-29 13:15:09] 2025-07-29 17:14:35,990 | INFO     | zombie collector waiting for pid 3638507
[2025-07-29 13:15:09] 2025-07-29 17:14:35,991 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 13:15:09] 2025-07-29 17:14:35,992 | INFO     | collected zombie processes
[2025-07-29 13:15:09] 2025-07-29 17:14:35,992 | INFO     | will attempt to kill all subprocesses of pid=3638507
[2025-07-29 13:15:09] 2025-07-29 17:14:36,447 | INFO     | process IDs to be killed: [3638507] (in reverse order)
[2025-07-29 13:15:09] 2025-07-29 17:14:36,757 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 13:15:09] 2025-07-29 17:14:36,757 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 13:15:09] 2025-07-29 17:14:36,776 | INFO     | did not find any defunct processes belonging to 3638507
[2025-07-29 13:15:09] 2025-07-29 17:14:36,791 | INFO     | did not find any defunct processes belonging to 3638507
[2025-07-29 13:15:09] 2025-07-29 17:14:36,794 | INFO     | ready for new job
[2025-07-29 13:15:09] 2025-07-29 17:14:36,794 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 13:15:09] 2025-07-29 17:14:36,798 | INFO     | ***************************************
[2025-07-29 13:15:09] 2025-07-29 17:14:36,798 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 13:15:09] 2025-07-29 17:14:36,798 | INFO     | ***************************************
[2025-07-29 13:15:09] 2025-07-29 17:14:36,798 | INFO     | 
[2025-07-29 13:15:09] 2025-07-29 17:14:36,814 | INFO     | architecture information:
[2025-07-29 13:15:09] 2025-07-29 17:14:36,814 | INFO     | executing command: cat /etc/os-release
[2025-07-29 13:15:09] 2025-07-29 17:14:36,833 | INFO     | cat /etc/os-release:
[2025-07-29 13:15:09] NAME="CentOS Linux"
[2025-07-29 13:15:09] VERSION="7 (Core)"
[2025-07-29 13:15:09] ID="centos"
[2025-07-29 13:15:09] ID_LIKE="rhel fedora"
[2025-07-29 13:15:09] VERSION_ID="7"
[2025-07-29 13:15:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 13:15:09] ANSI_COLOR="0;31"
[2025-07-29 13:15:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 13:15:09] HOME_URL="https://www.centos.org/"
[2025-07-29 13:15:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 13:15:09] 
[2025-07-29 13:15:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 13:15:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 13:15:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 13:15:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 13:15:09] 
[2025-07-29 13:15:09] 2025-07-29 17:14:36,833 | INFO     | ***************************************
[2025-07-29 13:15:09] 2025-07-29 17:14:37,337 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-29 13:15:09] 2025-07-29 17:14:37,355 | INFO     | sufficient remaining disk space (55875469312 B)
[2025-07-29 13:15:09] 2025-07-29 17:14:37,356 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 13:15:09] 2025-07-29 17:14:37,356 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 13:15:09] 2025-07-29 17:14:37,356 | INFO     | update_server=False
[2025-07-29 13:15:09] 2025-07-29 17:14:37,356 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 13:15:09] 2025-07-29 17:14:37,356 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 13:15:09] 2025-07-29 17:14:37,357 | INFO     | aborting loop
[2025-07-29 13:15:09] 2025-07-29 17:14:37,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 13:15:09] 2025-07-29 17:14:38,150 | INFO     | all job control threads have been joined
[2025-07-29 13:15:09] 2025-07-29 17:14:38,233 | INFO     | all data control threads have been joined
[2025-07-29 13:15:09] 2025-07-29 17:14:38,361 | INFO     | [job] retrieve thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:38,363 | INFO     | [job] job monitor thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:38,371 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:38,483 | INFO     | all payload control threads have been joined
[2025-07-29 13:15:09] 2025-07-29 17:14:38,637 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,156 | INFO     | [job] control thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,229 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,239 | INFO     | [data] control thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,364 | INFO     | [data] copytool_out thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,366 | INFO     | [job] validate thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,456 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,489 | INFO     | [payload] control thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 13:15:09] 2025-07-29 17:14:39,633 | INFO     | [data] copytool_in thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,690 | INFO     | [payload] failed_post thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,693 | INFO     | [payload] validate_post thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:39,968 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 13:15:09] 2025-07-29 17:14:40,974 | INFO     | [job] queue monitor thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:43,526 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 13:15:09] 2025-07-29 17:14:44,837 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140708926310208)>', '<ExcThread(monitor, started 140708295997184)>']
[2025-07-29 13:15:09] 2025-07-29 17:14:49,863 | INFO     | all workflow threads have been joined
[2025-07-29 13:15:09] 2025-07-29 17:14:49,865 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 13:15:09] 2025-07-29 17:14:49,866 | INFO     | traces error code: 0
[2025-07-29 13:15:09] 2025-07-29 17:14:49,866 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 13:15:09] 2025-07-29 17:15:08,515 | INFO     | PID=3627920 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-29 13:15:09] 2025-07-29 17:15:08,516 | INFO     | .. there are 15 such processes running
[2025-07-29 13:15:09] 2025-07-29 17:15:08,517 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 13:15:09] 2025-07-29 17:15:08,517 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 13:15:09] 2025-07-29 17:15:08,517 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 13:15:09] 2025-07-29 17:15:08,517 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 13:15:09] 2025-07-29 17:15:08,518 | CRITICAL | thread 'MainThread' is not alive
[2025-07-29 13:15:09] 2025-07-29 17:15:08,518 | INFO     | [monitor] control thread has ended
[2025-07-29 13:15:09] 2025-07-29 17:15:08,881 [wrapper] ==== pilot stdout END ====
[2025-07-29 13:15:09] 2025-07-29 17:15:08,899 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 13:15:09] 2025-07-29 17:15:08,918 [wrapper] pilotpid: 3627920
[2025-07-29 13:15:09] 2025-07-29 17:15:08,951 [wrapper] Pilot exit status: 0
[2025-07-29 13:15:09] 2025-07-29 17:15:09,075 [wrapper] pandaids: 6741690054
[2025-07-29 13:15:09] 2025-07-29 17:15:09,251 [wrapper] cleanup supervisor_pilot  591158 3627921
[2025-07-29 13:15:09] 2025-07-29 17:15:09,275 [wrapper] Test setup, not cleaning
[2025-07-29 13:15:09] 2025-07-29 17:15:09,278 [wrapper] apfmon messages muted
[2025-07-29 13:15:09] 2025-07-29 17:15:09,280 [wrapper] ==== wrapper stdout END ====
[2025-07-29 13:15:09] 2025-07-29 17:15:09,283 [wrapper] ==== wrapper stderr END ====
[2025-07-29 13:15:09]  *** Error codes and diagnostics ***
[2025-07-29 13:15:09]     "exeErrorCode": 0,
[2025-07-29 13:15:09]     "exeErrorDiag": "",
[2025-07-29 13:15:09]     "pilotErrorCode": 0,
[2025-07-29 13:15:09]     "pilotErrorDiag": "",
[2025-07-29 13:15:09]  *** Listing of results directory ***
[2025-07-29 13:15:09] total 567596
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas    530466 Jul 21 16:41 pilot3.tar.gz
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas      5112 Jul 21 16:53 queuedata.json
[2025-07-29 13:15:09] -rwx------. 1 boincer umatlas     36292 Jul 21 16:53 runpilot2-wrapper.sh
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas       100 Jul 29 09:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 13:15:09] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 29 09:19 run_atlas
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas       105 Jul 29 09:19 job.xml
[2025-07-29 13:15:09] -rw-r--r--. 2 boincer umatlas 321010836 Jul 29 09:19 EVNT.45697521._000141.pool.root.1
[2025-07-29 13:15:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 29 09:19 start_atlas.sh
[2025-07-29 13:15:09] drwxrwx--x. 2 boincer umatlas      4096 Jul 29 09:19 shared
[2025-07-29 13:15:09] -rw-r--r--. 2 boincer umatlas    542896 Jul 29 09:19 input.tar.gz
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas         0 Jul 29 09:19 boinc_lockfile
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas      2635 Jul 29 09:19 pandaJob.out
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas    977316 Jul 29 09:20 agis_schedconf.cvmfs.json
[2025-07-29 13:15:09] drwx------. 4 boincer umatlas      4096 Jul 29 09:20 pilot3
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas      6843 Jul 29 13:12 init_data.xml
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas       531 Jul 29 13:13 boinc_task_state.xml
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas 253079177 Jul 29 13:13 HITS.45697523._003547.pool.root.1
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas      1043 Jul 29 13:14 memory_monitor_summary.json
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas   1589827 Jul 29 13:14 agis_ddmendpoints.agis.ALL.json
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas    464385 Jul 29 13:14 log.45697523._003547.job.log.tgz.1
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas      7826 Jul 29 13:14 heartbeat.json
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas        28 Jul 29 13:15 wrapper_checkpoint.txt
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas      8192 Jul 29 13:15 boinc_mmap_file
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas        95 Jul 29 13:15 pilot_heartbeat.json
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas       893 Jul 29 13:15 pilotlog.txt
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas   1161276 Jul 29 13:15 log.45697523._003547.job.log.1
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas       357 Jul 29 13:15 output.list
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas       620 Jul 29 13:15 runtime_log
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas   1648640 Jul 29 13:15 result.tar.gz
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas       660 Jul 29 13:15 tx0LDmggCy7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgWGLDm8BAtFo.diag
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas      8668 Jul 29 13:15 runtime_log.err
[2025-07-29 13:15:09] -rw-r--r--. 1 boincer umatlas     21240 Jul 29 13:15 stderr.txt
[2025-07-29 13:15:09] HITS file was successfully produced:
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas 253079177 Jul 29 13:13 shared/HITS.pool.root.1
[2025-07-29 13:15:09]  *** Contents of shared directory: ***
[2025-07-29 13:15:09] total 562804
[2025-07-29 13:15:09] -rw-r--r--. 2 boincer umatlas 321010836 Jul 29 09:19 ATLAS.root_0
[2025-07-29 13:15:09] -rw-r--r--. 2 boincer umatlas     15095 Jul 29 09:19 start_atlas.sh
[2025-07-29 13:15:09] -rw-r--r--. 2 boincer umatlas    542896 Jul 29 09:19 input.tar.gz
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas 253079177 Jul 29 13:13 HITS.pool.root.1
[2025-07-29 13:15:09] -rw-------. 1 boincer umatlas   1648640 Jul 29 13:15 result.tar.gz
13:15:10 (3622681): run_atlas exited; CPU time 57020.829724
13:15:10 (3622681): called boinc_finish(0)

</stderr_txt>
]]>

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