Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:55:49 (25933): wrapper (7.7.26015): starting
07:55:49 (25933): wrapper: running run_atlas (--nthreads 8)
[2025-07-29 07:55:49] Arguments: --nthreads 8
[2025-07-29 07:55:49] Threads: 8
[2025-07-29 07:55:49] Checking for CVMFS
[2025-07-29 07:55:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 07:55:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 07:55:50] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 07:55:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 07:55:50] 2.11.2.0 3213 519786 247476 148886 2 1 10430150 20275201 1 130560 0 183091611 99.988 22626048 19758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-29 07:55:50] CVMFS is ok
[2025-07-29 07:55:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 07:55:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-29 07:55:50] Further information can be found at the LHC@home message board.
[2025-07-29 07:55:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 07:55:50] Checking for apptainer binary...
[2025-07-29 07:55:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 07:55:50] Running /usr/bin/apptainer --version
[2025-07-29 07:55:50] apptainer version 1.3.2-1.el7
[2025-07-29 07:55:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 07:55:51] c-205-38.aglt2.org
[2025-07-29 07:55:51] apptainer works
[2025-07-29 07:55:51] Set ATHENA_PROC_NUMBER=8
[2025-07-29 07:55:51] Set ATHENA_CORE_NUMBER=8
[2025-07-29 07:55:51] Starting ATLAS job with PandaID=6744843190
[2025-07-29 07:55:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 08:58:55]  *** The last 200 lines of the pilot log: ***
[2025-07-29 08:58:55]  is_altstaged=None
[2025-07-29 08:58:55]  is_tar=False
[2025-07-29 08:58:55]  lfn=log.45743349._002949.job.log.tgz.1
[2025-07-29 08:58:55]  mtime=0
[2025-07-29 08:58:55]  protocol_id=None
[2025-07-29 08:58:55]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-29 08:58:55]  replicas=None
[2025-07-29 08:58:55]  scope=mc23_13p6TeV
[2025-07-29 08:58:55]  status=None
[2025-07-29 08:58:55]  status_code=0
[2025-07-29 08:58:55]  storage_token=
[2025-07-29 08:58:55]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744843190/log.45743349._002949.job.log.tgz.1
[2025-07-29 08:58:55]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/ee/log.45743349._002949.job.log.tgz.1
[2025-07-29 08:58:55]  workdir=None
[2025-07-29 08:58:55] ]
[2025-07-29 08:58:55] 2025-07-29 12:58:17,368 | INFO     | transferring file log.45743349._002949.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744843190/log.45743349._002949.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-29 08:58:55] 2025-07-29 12:58:17,368 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744843190/log.45743349._002949.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._002949.job
[2025-07-29 08:58:55] 2025-07-29 12:58:17,386 | INFO     | adding to output.list: log.45743349._002949.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b6/ee/log.45743349._002949.job.log.tg
[2025-07-29 08:58:55] 2025-07-29 12:58:17,386 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-29 08:58:55] 2025-07-29 12:58:17,386 | INFO     | summary of transferred files:
[2025-07-29 08:58:55] 2025-07-29 12:58:17,386 | INFO     |  -- lfn=log.45743349._002949.job.log.tgz.1, status_code=0, status=transferred
[2025-07-29 08:58:55] 2025-07-29 12:58:17,386 | INFO     | stage-out finished correctly
[2025-07-29 08:58:55] 2025-07-29 12:58:19,138 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-29 08:58:55] 2025-07-29 12:58:19,451 | INFO     | job 6744843190 has state=finished
[2025-07-29 08:58:55] 2025-07-29 12:58:19,451 | INFO     | preparing for final server update for job 6744843190 in state='finished'
[2025-07-29 08:58:55] 2025-07-29 12:58:19,452 | INFO     | this job has now completed (state=finished)
[2025-07-29 08:58:55] 2025-07-29 12:58:19,452 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-29 08:58:55] 2025-07-29 12:58:19,452 | INFO     | log transfer has been attempted: DONE
[2025-07-29 08:58:55] 2025-07-29 12:58:19,452 | INFO     | job 6744843190 has finished - writing final server update
[2025-07-29 08:58:55] 2025-07-29 12:58:19,452 | INFO     | total number of processed events: 400 (read)
[2025-07-29 08:58:55] 2025-07-29 12:58:19,453 | INFO     | executing command: lscpu
[2025-07-29 08:58:55] 2025-07-29 12:58:19,483 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 08:58:55] 2025-07-29 12:58:21,150 | WARNING  | process 4045 can no longer be monitored (due to stat problems) - aborting
[2025-07-29 08:58:55] 2025-07-29 12:58:21,150 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744843190/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 08:58:55] 2025-07-29 12:58:21,207 | INFO     | number of running child processes to parent process 4045: 1
[2025-07-29 08:58:55] 2025-07-29 12:58:21,208 | INFO     | maximum number of monitored processes: 6
[2025-07-29 08:58:55] 2025-07-29 12:58:23,609 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-29 08:58:55] 2025-07-29 12:58:23,613 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 1309.5455625
[2025-07-29 08:58:55] 2025-07-29 12:58:23,616 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744843190/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 08:58:55] 2025-07-29 12:58:23,617 | INFO     | extracted standard info from prmon json
[2025-07-29 08:58:55] 2025-07-29 12:58:23,617 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 08:58:55] 2025-07-29 12:58:23,617 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 08:58:55] 2025-07-29 12:58:23,618 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 08:58:55] 2025-07-29 12:58:23,618 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 08:58:55] 2025-07-29 12:58:23,620 | INFO     | fitting pss+swap vs Time
[2025-07-29 08:58:55] 2025-07-29 12:58:23,620 | INFO     | sum of square deviations: 48810217.5
[2025-07-29 08:58:55] 2025-07-29 12:58:23,620 | INFO     | sum of deviations: -4282323341.9999995
[2025-07-29 08:58:55] 2025-07-29 12:58:23,620 | INFO     | mean x: 1753792111.5
[2025-07-29 08:58:55] 2025-07-29 12:58:23,621 | INFO     | mean y: 2598095.703703704
[2025-07-29 08:58:55] 2025-07-29 12:58:23,621 | INFO     | -- intersect: 153870072586.9189
[2025-07-29 08:58:55] 2025-07-29 12:58:23,621 | INFO     | intersect: 153870072586.9189
[2025-07-29 08:58:55] 2025-07-29 12:58:23,621 | INFO     | chi2: 0.055664980537561505
[2025-07-29 08:58:55] 2025-07-29 12:58:23,621 | INFO     | -- intersect: 153870072586.9189
[2025-07-29 08:58:55] 2025-07-29 12:58:23,621 | INFO     | current memory leak: -87.73 B/s (using 54 data points, chi2=0.06)
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | could have reported an average CPU frequency of 2156 MHz (6 samples)
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | ..............................
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | . Timing measurements:
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | . get job = 0 s
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | . initial setup = 2 s
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | . payload setup = 8 s
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | . stage-in = 0 s
[2025-07-29 08:58:55] 2025-07-29 12:58:23,622 | INFO     | . payload execution = 3705 s
[2025-07-29 08:58:55] 2025-07-29 12:58:23,623 | INFO     | . stage-out = 0 s
[2025-07-29 08:58:55] 2025-07-29 12:58:23,623 | INFO     | . log creation = 0 s
[2025-07-29 08:58:55] 2025-07-29 12:58:23,623 | INFO     | ..............................
[2025-07-29 08:58:55] 2025-07-29 12:58:24,031 | INFO     | 
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | job summary report
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | --------------------------------------------------
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | PanDA job id: 6744843190
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | task id: 45743349
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | errors: (none)
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | pilot state: finished 
[2025-07-29 08:58:55] 2025-07-29 12:58:24,032 | INFO     | transexitcode: 0
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | exeerrorcode: 0
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | exeerrordiag: 
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | exitcode: 0
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | exitmsg: OK
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | cpuconsumptiontime: 27694 s
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | nevents: 400
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | neventsw: 0
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | pid: 4045
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | pgrp: 4045
[2025-07-29 08:58:55] 2025-07-29 12:58:24,033 | INFO     | corecount: 8
[2025-07-29 08:58:55] 2025-07-29 12:58:24,034 | INFO     | event service: False
[2025-07-29 08:58:55] 2025-07-29 12:58:24,034 | INFO     | sizes: {0: 2391903, 5: 2392165, 11: 2392221, 3717: 2418104, 3718: 2427102, 3720: 2427158, 3724: 2427480}
[2025-07-29 08:58:55] 2025-07-29 12:58:24,034 | INFO     | --------------------------------------------------
[2025-07-29 08:58:55] 2025-07-29 12:58:24,034 | INFO     | 
[2025-07-29 08:58:55] 2025-07-29 12:58:24,034 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-29 08:58:55] 2025-07-29 12:58:24,055 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,055 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,056 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,057 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,057 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,057 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,057 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,057 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,057 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,058 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 08:58:55] 2025-07-29 12:58:24,058 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,058 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 08:58:55] 2025-07-29 12:58:24,058 | INFO     | job 6744843190 has completed (purged errors)
[2025-07-29 08:58:55] 2025-07-29 12:58:24,058 | INFO     | overall cleanup function is called
[2025-07-29 08:58:55] 2025-07-29 12:58:25,062 | INFO     | --- collectZombieJob: --- 10, [4045]
[2025-07-29 08:58:55] 2025-07-29 12:58:25,062 | INFO     | zombie collector waiting for pid 4045
[2025-07-29 08:58:55] 2025-07-29 12:58:25,062 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 08:58:55] 2025-07-29 12:58:25,063 | INFO     | collected zombie processes
[2025-07-29 08:58:55] 2025-07-29 12:58:25,063 | INFO     | will attempt to kill all subprocesses of pid=4045
[2025-07-29 08:58:55] 2025-07-29 12:58:25,144 | INFO     | process IDs to be killed: [4045] (in reverse order)
[2025-07-29 08:58:55] 2025-07-29 12:58:25,185 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 08:58:55] 2025-07-29 12:58:25,186 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 08:58:55] 2025-07-29 12:58:25,189 | INFO     | did not find any defunct processes belonging to 4045
[2025-07-29 08:58:55] 2025-07-29 12:58:25,191 | INFO     | did not find any defunct processes belonging to 4045
[2025-07-29 08:58:55] 2025-07-29 12:58:25,191 | INFO     | ready for new job
[2025-07-29 08:58:55] 2025-07-29 12:58:25,192 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 08:58:55] 2025-07-29 12:58:25,193 | INFO     | ***************************************
[2025-07-29 08:58:55] 2025-07-29 12:58:25,194 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 08:58:55] 2025-07-29 12:58:25,194 | INFO     | ***************************************
[2025-07-29 08:58:55] 2025-07-29 12:58:25,194 | INFO     | 
[2025-07-29 08:58:55] 2025-07-29 12:58:25,195 | INFO     | architecture information:
[2025-07-29 08:58:55] 2025-07-29 12:58:25,195 | INFO     | executing command: cat /etc/os-release
[2025-07-29 08:58:55] 2025-07-29 12:58:25,209 | INFO     | cat /etc/os-release:
[2025-07-29 08:58:55] NAME="CentOS Linux"
[2025-07-29 08:58:55] VERSION="7 (Core)"
[2025-07-29 08:58:55] ID="centos"
[2025-07-29 08:58:55] ID_LIKE="rhel fedora"
[2025-07-29 08:58:55] VERSION_ID="7"
[2025-07-29 08:58:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 08:58:55] ANSI_COLOR="0;31"
[2025-07-29 08:58:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 08:58:55] HOME_URL="https://www.centos.org/"
[2025-07-29 08:58:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 08:58:55] 
[2025-07-29 08:58:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 08:58:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 08:58:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 08:58:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 08:58:55] 
[2025-07-29 08:58:55] 2025-07-29 12:58:25,210 | INFO     | ***************************************
[2025-07-29 08:58:55] 2025-07-29 12:58:25,713 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-29 08:58:55] 2025-07-29 12:58:25,729 | INFO     | sufficient remaining disk space (33263976448 B)
[2025-07-29 08:58:55] 2025-07-29 12:58:25,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 08:58:55] 2025-07-29 12:58:25,730 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 08:58:55] 2025-07-29 12:58:25,730 | INFO     | update_server=False
[2025-07-29 08:58:55] 2025-07-29 12:58:25,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 08:58:55] 2025-07-29 12:58:25,730 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 08:58:55] 2025-07-29 12:58:25,730 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 08:58:55] 2025-07-29 12:58:26,213 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-29 08:58:55] 2025-07-29 12:58:26,213 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-29 08:58:55] 2025-07-29 12:58:26,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 08:58:55] 2025-07-29 12:58:26,214 | INFO     | will abort loop
[2025-07-29 08:58:55] 2025-07-29 12:58:26,622 | INFO     | all data control threads have been joined
[2025-07-29 08:58:55] 2025-07-29 12:58:26,735 | INFO     | [job] retrieve thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:26,798 | INFO     | [job] validate thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:26,816 | INFO     | [data] copytool_in thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:26,943 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:26,961 | INFO     | [payload] validate_post thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:27,124 | INFO     | all job control threads have been joined
[2025-07-29 08:58:55] 2025-07-29 12:58:27,146 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:27,219 | INFO     | [job] job monitor thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:27,224 | INFO     | all payload control threads have been joined
[2025-07-29 08:58:55] 2025-07-29 12:58:27,628 | INFO     | [data] control thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:27,736 | INFO     | [data] copytool_out thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:27,776 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:27,909 | INFO     | [payload] failed_post thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:28,130 | INFO     | [job] control thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:28,226 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:28,229 | INFO     | [payload] control thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:28,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 08:58:55] 2025-07-29 12:58:29,718 | INFO     | [job] queue monitor thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:29,736 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 08:58:55] 2025-07-29 12:58:29,819 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140615389312832)>', '<ExcThread(monitor, started 140614662346496)>']
[2025-07-29 08:58:55] 2025-07-29 12:58:34,844 | INFO     | all workflow threads have been joined
[2025-07-29 08:58:55] 2025-07-29 12:58:34,844 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 08:58:55] 2025-07-29 12:58:34,845 | INFO     | traces error code: 0
[2025-07-29 08:58:55] 2025-07-29 12:58:34,845 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 08:58:55] 2025-07-29 12:58:55,239 | INFO     | PID=29901 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-29 08:58:55] 2025-07-29 12:58:55,240 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 08:58:55] 2025-07-29 12:58:55,240 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 08:58:55] 2025-07-29 12:58:55,240 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 08:58:55] 2025-07-29 12:58:55,240 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 08:58:55] 2025-07-29 12:58:55,240 | INFO     | [monitor] control thread has ended
[2025-07-29 08:58:55] 2025-07-29 12:58:55,340 [wrapper] ==== pilot stdout END ====
[2025-07-29 08:58:55] 2025-07-29 12:58:55,344 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 08:58:55] 2025-07-29 12:58:55,347 [wrapper] pilotpid: 29901
[2025-07-29 08:58:55] 2025-07-29 12:58:55,351 [wrapper] Pilot exit status: 0
[2025-07-29 08:58:55] 2025-07-29 12:58:55,364 [wrapper] pandaids: 6744843190
[2025-07-29 08:58:55] 2025-07-29 12:58:55,398 [wrapper] cleanup supervisor_pilot 24742 29902
[2025-07-29 08:58:55] 2025-07-29 12:58:55,401 [wrapper] Test setup, not cleaning
[2025-07-29 08:58:55] 2025-07-29 12:58:55,405 [wrapper] apfmon messages muted
[2025-07-29 08:58:55] 2025-07-29 12:58:55,408 [wrapper] ==== wrapper stdout END ====
[2025-07-29 08:58:55] 2025-07-29 12:58:55,412 [wrapper] ==== wrapper stderr END ====
[2025-07-29 08:58:55]  *** Error codes and diagnostics ***
[2025-07-29 08:58:55]     "exeErrorCode": 0,
[2025-07-29 08:58:55]     "exeErrorDiag": "",
[2025-07-29 08:58:55]     "pilotErrorCode": 0,
[2025-07-29 08:58:55]     "pilotErrorDiag": "",
[2025-07-29 08:58:55]  *** Listing of results directory ***
[2025-07-29 08:58:55] total 428872
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 13:03 pilot3.tar.gz
[2025-07-29 08:58:55] -rwx------ 1 boincer umatlas     36292 Jul 24 13:21 runpilot2-wrapper.sh
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 13:21 queuedata.json
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas       100 Jul 29 07:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 08:58:55] -rwxr-xr-x 1 boincer umatlas      7986 Jul 29 07:55 run_atlas
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas       105 Jul 29 07:55 job.xml
[2025-07-29 08:58:55] -rw-r--r-- 2 boincer umatlas 231434101 Jul 29 07:55 EVNT.45743347._000164.pool.root.1
[2025-07-29 08:58:55] -rw-r--r-- 2 boincer umatlas     15095 Jul 29 07:55 start_atlas.sh
[2025-07-29 08:58:55] drwxrwx--x 2 boincer umatlas      4096 Jul 29 07:55 shared
[2025-07-29 08:58:55] -rw-r--r-- 2 boincer umatlas    542888 Jul 29 07:55 input.tar.gz
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas         0 Jul 29 07:55 boinc_lockfile
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas      2560 Jul 29 07:55 pandaJob.out
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas    977308 Jul 29 07:56 agis_schedconf.cvmfs.json
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas   1589827 Jul 29 07:56 agis_ddmendpoints.agis.ALL.json
[2025-07-29 08:58:55] drwx------ 4 boincer umatlas      4096 Jul 29 07:56 pilot3
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas      6050 Jul 29 08:57 init_data.xml
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas 202495176 Jul 29 08:57 HITS.45743349._002949.pool.root.1
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas       529 Jul 29 08:58 boinc_task_state.xml
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas      1041 Jul 29 08:58 memory_monitor_summary.json
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas    307318 Jul 29 08:58 log.45743349._002949.job.log.tgz.1
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas      7831 Jul 29 08:58 heartbeat.json
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas        27 Jul 29 08:58 wrapper_checkpoint.txt
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas      8192 Jul 29 08:58 boinc_mmap_file
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas        95 Jul 29 08:58 pilot_heartbeat.json
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas       745 Jul 29 08:58 pilotlog.txt
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas    373984 Jul 29 08:58 log.45743349._002949.job.log.1
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas       357 Jul 29 08:58 output.list
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas       620 Jul 29 08:58 runtime_log
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas    696320 Jul 29 08:58 result.tar.gz
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas       656 Jul 29 08:58 VhTLDmDoEz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmG5wKDmufc0Xn.diag
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas      8660 Jul 29 08:58 runtime_log.err
[2025-07-29 08:58:55] -rw-r--r-- 1 boincer umatlas     21466 Jul 29 08:58 stderr.txt
[2025-07-29 08:58:55] HITS file was successfully produced:
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas 202495176 Jul 29 08:57 shared/HITS.pool.root.1
[2025-07-29 08:58:55]  *** Contents of shared directory: ***
[2025-07-29 08:58:55] total 425000
[2025-07-29 08:58:55] -rw-r--r-- 2 boincer umatlas 231434101 Jul 29 07:55 ATLAS.root_0
[2025-07-29 08:58:55] -rw-r--r-- 2 boincer umatlas     15095 Jul 29 07:55 start_atlas.sh
[2025-07-29 08:58:55] -rw-r--r-- 2 boincer umatlas    542888 Jul 29 07:55 input.tar.gz
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas 202495176 Jul 29 08:57 HITS.pool.root.1
[2025-07-29 08:58:55] -rw------- 1 boincer umatlas    696320 Jul 29 08:58 result.tar.gz
08:58:57 (25933): run_atlas exited; CPU time 27602.919086
08:58:57 (25933): called boinc_finish(0)

</stderr_txt>
]]>

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