Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:13:05 (394771): wrapper (7.7.26015): starting
01:13:05 (394771): wrapper: running run_atlas (--nthreads 8)
[2025-07-29 01:13:05] Arguments: --nthreads 8
[2025-07-29 01:13:05] Threads: 8
[2025-07-29 01:13:05] Checking for CVMFS
[2025-07-29 01:13:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 01:13:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 01:13:05] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 01:13:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 01:13:06] 2.13.1.0 5077 4383 198496 148876 3 650 31297027 40960001 11801 16776704 0 10806891 99.691 13016806 35895 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-29 01:13:06] CVMFS is ok
[2025-07-29 01:13:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 01:13:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-29 01:13:06] Further information can be found at the LHC@home message board.
[2025-07-29 01:13:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 01:13:06] Checking for apptainer binary...
[2025-07-29 01:13:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 01:13:06] Running /usr/bin/apptainer --version
[2025-07-29 01:13:06] apptainer version 1.4.1-1.el9
[2025-07-29 01:13:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 01:13:06] c-206-39.aglt2.org
[2025-07-29 01:13:06] apptainer works
[2025-07-29 01:13:06] Set ATHENA_PROC_NUMBER=8
[2025-07-29 01:13:06] Set ATHENA_CORE_NUMBER=8
[2025-07-29 01:13:06] Starting ATLAS job with PandaID=6744927633
[2025-07-29 01:13:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
02:49:53 (648579): wrapper (7.7.26015): starting
02:49:53 (648579): wrapper: running run_atlas (--nthreads 8)
[2025-07-29 02:49:53] Arguments: --nthreads 8
[2025-07-29 02:49:53] Threads: 8
[2025-07-29 02:49:53] This job has been restarted, cleaning up previous attempt
[2025-07-29 02:49:54] Checking for CVMFS
[2025-07-29 02:49:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-29 02:49:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-29 02:49:54] Running cvmfs_config stat atlas.cern.ch
[2025-07-29 02:49:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-29 02:49:54] 2.13.1.0 5077 4480 183932 148878 3 22 33364687 40960000 13446 16776704 0 11018527 99.680 13675383 35824 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-29 02:49:54] CVMFS is ok
[2025-07-29 02:49:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-29 02:49:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-29 02:49:54] Further information can be found at the LHC@home message board.
[2025-07-29 02:49:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-29 02:49:54] Checking for apptainer binary...
[2025-07-29 02:49:54] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-29 02:49:54] Running /usr/bin/apptainer --version
[2025-07-29 02:49:54] apptainer version 1.4.1-1.el9
[2025-07-29 02:49:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-29 02:49:55] c-206-39.aglt2.org
[2025-07-29 02:49:55] apptainer works
[2025-07-29 02:49:55] Set ATHENA_PROC_NUMBER=8
[2025-07-29 02:49:55] Set ATHENA_CORE_NUMBER=8
[2025-07-29 02:49:55] Starting ATLAS job with PandaID=6744927633
[2025-07-29 02:49:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-29 04:52:08]  *** The last 200 lines of the pilot log: ***
[2025-07-29 04:52:08] 2025-07-29 08:51:30,936 | INFO     | executing command: lscpu
[2025-07-29 04:52:08] 2025-07-29 08:51:30,990 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-29 04:52:08] 2025-07-29 08:51:33,157 | INFO     | monitor loop #513: job 0:6744927633 is in state 'finished'
[2025-07-29 04:52:08] 2025-07-29 08:51:33,157 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,494 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-29 04:52:08] 2025-07-29 08:51:35,502 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3251.7636406249994
[2025-07-29 04:52:08] 2025-07-29 08:51:35,519 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744927633/memory_monitor_summary.json (trf name=prmon)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,524 | INFO     | extracted standard info from prmon json
[2025-07-29 04:52:08] 2025-07-29 08:51:35,524 | INFO     | extracted standard memory fields from prmon json
[2025-07-29 04:52:08] 2025-07-29 08:51:35,524 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-29 04:52:08] 2025-07-29 08:51:35,524 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-29 04:52:08] 2025-07-29 08:51:35,525 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-29 04:52:08] 2025-07-29 08:51:35,527 | INFO     | fitting pss+swap vs Time
[2025-07-29 04:52:08] 2025-07-29 08:51:35,527 | INFO     | sum of square deviations: 522492588.57142955
[2025-07-29 04:52:08] 2025-07-29 08:51:35,527 | INFO     | sum of deviations: -10512476167.714289
[2025-07-29 04:52:08] 2025-07-29 08:51:35,527 | INFO     | mean x: 1753775443.142857
[2025-07-29 04:52:08] 2025-07-29 08:51:35,528 | INFO     | mean y: 2610887.336134454
[2025-07-29 04:52:08] 2025-07-29 08:51:35,528 | INFO     | -- intersect: 35288322020.52173
[2025-07-29 04:52:08] 2025-07-29 08:51:35,528 | INFO     | intersect: 35288322020.52173
[2025-07-29 04:52:08] 2025-07-29 08:51:35,528 | INFO     | chi2: 1.3173434502809724
[2025-07-29 04:52:08] 2025-07-29 08:51:35,528 | INFO     | sum of square deviations: 459361705.9649137
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | sum of deviations: -9762642298.157894
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | mean x: 1753775290.6491227
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | mean y: 2612702.9210526315
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | -- intersect: 37274942136.63102
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | intersect: 37274942136.63102
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | chi2: 1.314225107334218
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | current chi2=1.314225107334218 (change=0.23671449887190782 %)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | right removable region: 113
[2025-07-29 04:52:08] 2025-07-29 08:51:35,529 | INFO     | sum of square deviations: 459351335.9649137
[2025-07-29 04:52:08] 2025-07-29 08:51:35,530 | INFO     | sum of deviations: -22822116385.228058
[2025-07-29 04:52:08] 2025-07-29 08:51:35,530 | INFO     | mean x: 1753775595.6491227
[2025-07-29 04:52:08] 2025-07-29 08:51:35,530 | INFO     | mean y: 2639810.7192982454
[2025-07-29 04:52:08] 2025-07-29 08:51:35,530 | INFO     | -- intersect: 87136098720.555
[2025-07-29 04:52:08] 2025-07-29 08:51:35,530 | INFO     | intersect: 87136098720.555
[2025-07-29 04:52:08] 2025-07-29 08:51:35,530 | INFO     | chi2: 0.19477506601293412
[2025-07-29 04:52:08] 2025-07-29 08:51:35,530 | INFO     | current chi2=0.19477506601293412 (change=85.21455691973182 %)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,531 | INFO     | sum of square deviations: 401519461.651375
[2025-07-29 04:52:08] 2025-07-29 08:51:35,531 | INFO     | sum of deviations: -18135604993.33945
[2025-07-29 04:52:08] 2025-07-29 08:51:35,531 | INFO     | mean x: 1753775748.146789
[2025-07-29 04:52:08] 2025-07-29 08:51:35,531 | INFO     | mean y: 2627423.4587155962
[2025-07-29 04:52:08] 2025-07-29 08:51:35,531 | INFO     | -- intersect: 79216183061.5273
[2025-07-29 04:52:08] 2025-07-29 08:51:35,531 | INFO     | intersect: 79216183061.5273
[2025-07-29 04:52:08] 2025-07-29 08:51:35,531 | INFO     | chi2: 0.18641769474513756
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | current chi2=0.18641769474513756 (change=4.290780867835306 %)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | left removable region: 20
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | sum of square deviations: 249384239.89247304
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | sum of deviations: -7076978109.8172
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | mean x: 1753775870.1505377
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | mean y: 2596923.3440860217
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | -- intersect: 49770912066.00267
[2025-07-29 04:52:08] 2025-07-29 08:51:35,532 | INFO     | intersect: 49770912066.00267
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | chi2: 0.12156711557687591
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | -- intersect: 49770912066.00267
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | current memory leak: -28.38 B/s (using 93 data points, chi2=0.12)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | could have reported an average CPU frequency of 3216 MHz (7 samples)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | ..............................
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | . Timing measurements:
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | . get job = 0 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | . initial setup = 1 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,533 | INFO     | . payload setup = 8 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,534 | INFO     | . stage-in = 0 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,534 | INFO     | . payload execution = 7244 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,534 | INFO     | . stage-out = 2 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,534 | INFO     | . log creation = 0 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,534 | INFO     | ..............................
[2025-07-29 04:52:08] 2025-07-29 08:51:35,616 | INFO     | 
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | job summary report
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | --------------------------------------------------
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | PanDA job id: 6744927633
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | task id: 45743349
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | errors: (none)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | pilot state: finished 
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | transexitcode: 0
[2025-07-29 04:52:08] 2025-07-29 08:51:35,617 | INFO     | exeerrorcode: 0
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | exeerrordiag: 
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | exitcode: 0
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | exitmsg: OK
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | cpuconsumptiontime: 36435 s
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | nevents: 400
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | neventsw: 0
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | pid: 660284
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | pgrp: 660284
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | corecount: 8
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | event service: False
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | sizes: {0: 2391903, 6: 2392165, 11: 2392193, 7256: 2419582, 7257: 2419581, 7260: 2428819, 7268: 2428957}
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | --------------------------------------------------
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | 
[2025-07-29 04:52:08] 2025-07-29 08:51:35,618 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-29 04:52:08] 2025-07-29 08:51:35,643 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,644 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-29 04:52:08] 2025-07-29 08:51:35,645 | INFO     | job 6744927633 has completed (purged errors)
[2025-07-29 04:52:08] 2025-07-29 08:51:35,645 | INFO     | overall cleanup function is called
[2025-07-29 04:52:08] 2025-07-29 08:51:36,653 | INFO     | --- collectZombieJob: --- 10, [660284]
[2025-07-29 04:52:08] 2025-07-29 08:51:36,655 | INFO     | zombie collector waiting for pid 660284
[2025-07-29 04:52:08] 2025-07-29 08:51:36,655 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-29 04:52:08] 2025-07-29 08:51:36,655 | INFO     | collected zombie processes
[2025-07-29 04:52:08] 2025-07-29 08:51:36,655 | INFO     | will attempt to kill all subprocesses of pid=660284
[2025-07-29 04:52:08] 2025-07-29 08:51:36,984 | INFO     | process IDs to be killed: [660284] (in reverse order)
[2025-07-29 04:52:08] 2025-07-29 08:51:37,083 | WARNING  | found no corresponding commands to process id(s)
[2025-07-29 04:52:08] 2025-07-29 08:51:37,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-29 04:52:08] 2025-07-29 08:51:37,095 | INFO     | did not find any defunct processes belonging to 660284
[2025-07-29 04:52:08] 2025-07-29 08:51:37,106 | INFO     | did not find any defunct processes belonging to 660284
[2025-07-29 04:52:08] 2025-07-29 08:51:37,106 | INFO     | ready for new job
[2025-07-29 04:52:08] 2025-07-29 08:51:37,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-29 04:52:08] 2025-07-29 08:51:37,108 | INFO     | ***************************************
[2025-07-29 04:52:08] 2025-07-29 08:51:37,108 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-29 04:52:08] 2025-07-29 08:51:37,108 | INFO     | ***************************************
[2025-07-29 04:52:08] 2025-07-29 08:51:37,108 | INFO     | 
[2025-07-29 04:52:08] 2025-07-29 08:51:37,112 | INFO     | architecture information:
[2025-07-29 04:52:08] 2025-07-29 08:51:37,112 | INFO     | executing command: cat /etc/os-release
[2025-07-29 04:52:08] 2025-07-29 08:51:37,130 | INFO     | cat /etc/os-release:
[2025-07-29 04:52:08] NAME="CentOS Linux"
[2025-07-29 04:52:08] VERSION="7 (Core)"
[2025-07-29 04:52:08] ID="centos"
[2025-07-29 04:52:08] ID_LIKE="rhel fedora"
[2025-07-29 04:52:08] VERSION_ID="7"
[2025-07-29 04:52:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-29 04:52:08] ANSI_COLOR="0;31"
[2025-07-29 04:52:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-29 04:52:08] HOME_URL="https://www.centos.org/"
[2025-07-29 04:52:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-29 04:52:08] 
[2025-07-29 04:52:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-29 04:52:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-29 04:52:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-29 04:52:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-29 04:52:08] 
[2025-07-29 04:52:08] 2025-07-29 08:51:37,130 | INFO     | ***************************************
[2025-07-29 04:52:08] 2025-07-29 08:51:37,632 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-29 04:52:08] 2025-07-29 08:51:37,651 | INFO     | sufficient remaining disk space (86643834880 B)
[2025-07-29 04:52:08] 2025-07-29 08:51:37,652 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-29 04:52:08] 2025-07-29 08:51:37,652 | INFO     | current server update state: UPDATING_FINAL
[2025-07-29 04:52:08] 2025-07-29 08:51:37,652 | INFO     | update_server=False
[2025-07-29 04:52:08] 2025-07-29 08:51:37,652 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-29 04:52:08] 2025-07-29 08:51:37,653 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-29 04:52:08] 2025-07-29 08:51:37,653 | INFO     | aborting loop
[2025-07-29 04:52:08] 2025-07-29 08:51:38,074 | INFO     | all data control threads have been joined
[2025-07-29 04:52:08] 2025-07-29 08:51:38,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-29 04:52:08] 2025-07-29 08:51:38,245 | INFO     | all payload control threads have been joined
[2025-07-29 04:52:08] 2025-07-29 08:51:38,590 | INFO     | all job control threads have been joined
[2025-07-29 04:52:08] 2025-07-29 08:51:38,658 | INFO     | [job] retrieve thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:38,659 | INFO     | [job] job monitor thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:38,770 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-29 04:52:08] 2025-07-29 08:51:38,811 | INFO     | [payload] validate_post thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:38,870 | INFO     | [job] validate thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:38,901 | INFO     | [payload] validate_pre thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:39,010 | INFO     | [payload] execute_payloads thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:39,080 | INFO     | [data] control thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:39,250 | INFO     | [payload] control thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:39,553 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:39,591 | INFO     | [job] control thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:39,865 | INFO     | [data] copytool_in thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:39,987 | INFO     | [payload] failed_post thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:40,112 | INFO     | [job] create_data_payload thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:40,136 | INFO     | [data] copytool_out thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:40,626 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-29 04:52:08] 2025-07-29 08:51:41,633 | INFO     | [job] queue monitor thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:42,779 | INFO     | [data] queue_monitor thread has finished
[2025-07-29 04:52:08] 2025-07-29 08:51:43,327 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140635518900032)>', '<ExcThread(monitor, started 140634786612992)>']
[2025-07-29 04:52:08] 2025-07-29 08:51:48,353 | INFO     | all workflow threads have been joined
[2025-07-29 04:52:08] 2025-07-29 08:51:48,353 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-29 04:52:08] 2025-07-29 08:51:48,353 | INFO     | traces error code: 0
[2025-07-29 04:52:08] 2025-07-29 08:51:48,353 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-29 04:52:08] 2025-07-29 08:52:08,241 | INFO     | PID=652981 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-29 04:52:08] 2025-07-29 08:52:08,242 | INFO     | .. there are 11 such processes running
[2025-07-29 04:52:08] 2025-07-29 08:52:08,242 | INFO     | found 0 job(s) in 20 queues
[2025-07-29 04:52:08] 2025-07-29 08:52:08,242 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-29 04:52:08] 2025-07-29 08:52:08,242 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-29 04:52:08] 2025-07-29 08:52:08,242 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-29 04:52:08] 2025-07-29 08:52:08,242 | INFO     | [monitor] control thread has ended
[2025-07-29 04:52:08] 2025-07-29 08:52:08,370 [wrapper] ==== pilot stdout END ====
[2025-07-29 04:52:08] 2025-07-29 08:52:08,373 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-29 04:52:08] 2025-07-29 08:52:08,375 [wrapper] pilotpid: 652981
[2025-07-29 04:52:08] 2025-07-29 08:52:08,378 [wrapper] Pilot exit status: 0
[2025-07-29 04:52:08] 2025-07-29 08:52:08,395 [wrapper] pandaids: 6744927633 6744927633
[2025-07-29 04:52:08] 2025-07-29 08:52:08,462 [wrapper] cleanup supervisor_pilot  964627 652982
[2025-07-29 04:52:08] 2025-07-29 08:52:08,465 [wrapper] Test setup, not cleaning
[2025-07-29 04:52:08] 2025-07-29 08:52:08,469 [wrapper] apfmon messages muted
[2025-07-29 04:52:08] 2025-07-29 08:52:08,472 [wrapper] ==== wrapper stdout END ====
[2025-07-29 04:52:08] 2025-07-29 08:52:08,475 [wrapper] ==== wrapper stderr END ====
[2025-07-29 04:52:08]  *** Error codes and diagnostics ***
[2025-07-29 04:52:08]     "exeErrorCode": 0,
[2025-07-29 04:52:08]     "exeErrorDiag": "",
[2025-07-29 04:52:08]     "pilotErrorCode": 0,
[2025-07-29 04:52:08]     "pilotErrorDiag": "",
[2025-07-29 04:52:08]  *** Listing of results directory ***
[2025-07-29 04:52:08] total 493888
[2025-07-29 04:52:08] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 15:13 pilot3.tar.gz
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 15:54 queuedata.json
[2025-07-29 04:52:08] -rwx------. 1 boincer umatlas     36292 Jul 24 15:54 runpilot2-wrapper.sh
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas       100 Jul 29 01:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-29 04:52:08] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 29 01:13 run_atlas
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas       105 Jul 29 01:13 job.xml
[2025-07-29 04:52:08] -rw-r--r--. 3 boincer umatlas 148034168 Jul 29 01:13 EVNT.45743347._000443.pool.root.1
[2025-07-29 04:52:08] -rw-r--r--. 3 boincer umatlas 148034168 Jul 29 01:13 ATLAS.root_0
[2025-07-29 04:52:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 29 01:13 start_atlas.sh
[2025-07-29 04:52:08] drwxrwx--x. 2 boincer umatlas      4096 Jul 29 01:13 shared
[2025-07-29 04:52:08] -rw-r--r--. 2 boincer umatlas    542879 Jul 29 01:13 input.tar.gz
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas         0 Jul 29 01:13 boinc_lockfile
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas      2560 Jul 29 02:49 pandaJob.out
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas    977316 Jul 29 02:50 agis_schedconf.cvmfs.json
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas      6898 Jul 29 04:49 init_data.xml
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas 203777403 Jul 29 04:50 HITS.45743349._008413.pool.root.1
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas       531 Jul 29 04:50 boinc_task_state.xml
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas      1035 Jul 29 04:51 memory_monitor_summary.json
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas   1589827 Jul 29 04:51 agis_ddmendpoints.agis.ALL.json
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas    328685 Jul 29 04:51 log.45743349._008413.job.log.tgz.1
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas        96 Jul 29 04:51 pilot_heartbeat.json
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas      7787 Jul 29 04:51 heartbeat.json
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas      8192 Jul 29 04:52 boinc_mmap_file
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas        28 Jul 29 04:52 wrapper_checkpoint.txt
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas       822 Jul 29 04:52 pilotlog.txt
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas    676835 Jul 29 04:52 log.45743349._008413.job.log.1
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas       357 Jul 29 04:52 output.list
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas       620 Jul 29 04:52 runtime_log
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas   1024000 Jul 29 04:52 result.tar.gz
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas      8745 Jul 29 04:52 runtime_log.err
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas       778 Jul 29 04:52 8oxLDmNCHz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmJgxKDmhurefn.diag
[2025-07-29 04:52:08] -rw-r--r--. 1 boincer umatlas     23417 Jul 29 04:52 stderr.txt
[2025-07-29 04:52:08] HITS file was successfully produced:
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas 203777403 Jul 29 04:50 shared/HITS.pool.root.1
[2025-07-29 04:52:08]  *** Contents of shared directory: ***
[2025-07-29 04:52:08] total 345128
[2025-07-29 04:52:08] -rw-r--r--. 3 boincer umatlas 148034168 Jul 29 01:13 ATLAS.root_0
[2025-07-29 04:52:08] -rw-r--r--. 2 boincer umatlas     15095 Jul 29 01:13 start_atlas.sh
[2025-07-29 04:52:08] -rw-r--r--. 2 boincer umatlas    542879 Jul 29 01:13 input.tar.gz
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas 203777403 Jul 29 04:50 HITS.pool.root.1
[2025-07-29 04:52:08] -rw-------. 1 boincer umatlas   1024000 Jul 29 04:52 result.tar.gz
04:52:10 (648579): run_atlas exited; CPU time 36482.453602
04:52:10 (648579): called boinc_finish(0)

</stderr_txt>
]]>

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