Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:40:17 (4780): wrapper (7.7.26015): starting
21:40:17 (4780): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 21:40:17] Arguments: --nthreads 8
[2025-07-28 21:40:17] Threads: 8
[2025-07-28 21:40:17] Checking for CVMFS
[2025-07-28 21:40:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 21:40:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 21:40:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 21:40:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 21:40:18] 2.11.2.0 2827 114234 86148 148871 3 1 15205832 20275200 1 130560 0 29452669 99.963 9883736 10710 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 21:40:18] CVMFS is ok
[2025-07-28 21:40:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 21:40:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 21:40:18] Further information can be found at the LHC@home message board.
[2025-07-28 21:40:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 21:40:18] Checking for apptainer binary...
[2025-07-28 21:40:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 21:40:18] Running /usr/bin/apptainer --version
[2025-07-28 21:40:18] apptainer version 1.3.2-1.el7
[2025-07-28 21:40:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 21:40:19] c-115-13.aglt2.org
[2025-07-28 21:40:19] apptainer works
[2025-07-28 21:40:19] Set ATHENA_PROC_NUMBER=8
[2025-07-28 21:40:19] Set ATHENA_CORE_NUMBER=8
[2025-07-28 21:40:20] Starting ATLAS job with PandaID=6749258388
[2025-07-28 21:40:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 23:52:43]  *** The last 200 lines of the pilot log: ***
[2025-07-28 23:52:43] 2025-07-29 03:52:06,947 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 23:52:43] 2025-07-29 03:52:09,451 | INFO     | monitor loop #582: job 0:6749258388 is in state 'finished'
[2025-07-28 23:52:43] 2025-07-29 03:52:09,451 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,221 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 23:52:43] 2025-07-29 03:52:11,225 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1729.125
[2025-07-28 23:52:43] 2025-07-29 03:52:11,227 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749258388/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,228 | INFO     | extracted standard info from prmon json
[2025-07-28 23:52:43] 2025-07-29 03:52:11,228 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 23:52:43] 2025-07-29 03:52:11,228 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 23:52:43] 2025-07-29 03:52:11,229 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 23:52:43] 2025-07-29 03:52:11,229 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 23:52:43] 2025-07-29 03:52:11,232 | INFO     | fitting pss+swap vs Time
[2025-07-28 23:52:43] 2025-07-29 03:52:11,232 | INFO     | sum of square deviations: 665612480.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,233 | INFO     | sum of deviations: 2852297779.999997
[2025-07-28 23:52:43] 2025-07-29 03:52:11,233 | INFO     | mean x: 1753757174.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,233 | INFO     | mean y: 2519704.80620155
[2025-07-28 23:52:43] 2025-07-29 03:52:11,234 | INFO     | -- intersect: -7512720535.369686
[2025-07-28 23:52:43] 2025-07-29 03:52:11,234 | INFO     | intersect: -7512720535.369686
[2025-07-28 23:52:43] 2025-07-29 03:52:11,234 | INFO     | chi2: 1.5431341991767897
[2025-07-28 23:52:43] 2025-07-29 03:52:11,234 | INFO     | sum of square deviations: 591173875.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,235 | INFO     | sum of deviations: 2891004567.4999957
[2025-07-28 23:52:43] 2025-07-29 03:52:11,235 | INFO     | mean x: 1753757021.5
[2025-07-28 23:52:43] 2025-07-29 03:52:11,235 | INFO     | mean y: 2519784.2822580645
[2025-07-28 23:52:43] 2025-07-29 03:52:11,236 | INFO     | -- intersect: -8573839513.465276
[2025-07-28 23:52:43] 2025-07-29 03:52:11,236 | INFO     | intersect: -8573839513.465276
[2025-07-28 23:52:43] 2025-07-29 03:52:11,236 | INFO     | chi2: 1.5445722218951068
[2025-07-28 23:52:43] 2025-07-29 03:52:11,236 | INFO     | current chi2=1.5445722218951068 (change=-0.09318844200875027 %)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,236 | INFO     | right removable region: 123
[2025-07-28 23:52:43] 2025-07-29 03:52:11,237 | INFO     | sum of square deviations: 591173875.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,237 | INFO     | sum of deviations: -15803598485.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,237 | INFO     | mean x: 1753757326.5
[2025-07-28 23:52:43] 2025-07-29 03:52:11,237 | INFO     | mean y: 2557218.7258064514
[2025-07-28 23:52:43] 2025-07-29 03:52:11,238 | INFO     | -- intersect: 46885002130.7799
[2025-07-28 23:52:43] 2025-07-29 03:52:11,238 | INFO     | intersect: 46885002130.7799
[2025-07-28 23:52:43] 2025-07-29 03:52:11,238 | INFO     | chi2: 0.12150641197726383
[2025-07-28 23:52:43] 2025-07-29 03:52:11,238 | INFO     | current chi2=0.12150641197726383 (change=92.12599837123153 %)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,238 | INFO     | sum of square deviations: 522502820.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,239 | INFO     | sum of deviations: -13717262271.999998
[2025-07-28 23:52:43] 2025-07-29 03:52:11,239 | INFO     | mean x: 1753757479.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,239 | INFO     | mean y: 2552488.9663865548
[2025-07-28 23:52:43] 2025-07-29 03:52:11,239 | INFO     | -- intersect: 46043933281.752396
[2025-07-28 23:52:43] 2025-07-29 03:52:11,239 | INFO     | intersect: 46043933281.752396
[2025-07-28 23:52:43] 2025-07-29 03:52:11,240 | INFO     | chi2: 0.10968035528657583
[2025-07-28 23:52:43] 2025-07-29 03:52:11,240 | INFO     | current chi2=0.10968035528657583 (change=9.732866355152424 %)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,240 | INFO     | left removable region: 20
[2025-07-28 23:52:43] 2025-07-29 03:52:11,240 | INFO     | sum of square deviations: 338804492.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,241 | INFO     | sum of deviations: -5184691462.000001
[2025-07-28 23:52:43] 2025-07-29 03:52:11,241 | INFO     | mean x: 1753757601.0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,241 | INFO     | mean y: 2532379.4466019417
[2025-07-28 23:52:43] 2025-07-29 03:52:11,241 | INFO     | -- intersect: 26840110614.159927
[2025-07-28 23:52:43] 2025-07-29 03:52:11,241 | INFO     | intersect: 26840110614.159927
[2025-07-28 23:52:43] 2025-07-29 03:52:11,241 | INFO     | chi2: 0.0690681769842221
[2025-07-28 23:52:43] 2025-07-29 03:52:11,242 | INFO     | -- intersect: 26840110614.159927
[2025-07-28 23:52:43] 2025-07-29 03:52:11,242 | INFO     | current memory leak: -15.30 B/s (using 103 data points, chi2=0.07)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,242 | INFO     | could have reported an average CPU frequency of 2145 MHz (8 samples)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,242 | INFO     | ..............................
[2025-07-28 23:52:43] 2025-07-29 03:52:11,242 | INFO     | . Timing measurements:
[2025-07-28 23:52:43] 2025-07-29 03:52:11,242 | INFO     | . get job = 0 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,243 | INFO     | . initial setup = 2 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,243 | INFO     | . payload setup = 11 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,243 | INFO     | . stage-in = 0 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,243 | INFO     | . payload execution = 7853 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,243 | INFO     | . stage-out = 0 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,243 | INFO     | . log creation = 0 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,243 | INFO     | ..............................
[2025-07-28 23:52:43] 2025-07-29 03:52:11,335 | INFO     | 
[2025-07-28 23:52:43] 2025-07-29 03:52:11,336 | INFO     | job summary report
[2025-07-28 23:52:43] 2025-07-29 03:52:11,336 | INFO     | --------------------------------------------------
[2025-07-28 23:52:43] 2025-07-29 03:52:11,336 | INFO     | PanDA job id: 6749258388
[2025-07-28 23:52:43] 2025-07-29 03:52:11,336 | INFO     | task id: 45743349
[2025-07-28 23:52:43] 2025-07-29 03:52:11,337 | INFO     | errors: (none)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,337 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 23:52:43] 2025-07-29 03:52:11,337 | INFO     | pilot state: finished 
[2025-07-28 23:52:43] 2025-07-29 03:52:11,337 | INFO     | transexitcode: 0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,337 | INFO     | exeerrorcode: 0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,337 | INFO     | exeerrordiag: 
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | exitcode: 0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | exitmsg: OK
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | cpuconsumptiontime: 58974 s
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | nevents: 400
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | neventsw: 0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | pid: 15234
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | pgrp: 15234
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | corecount: 8
[2025-07-28 23:52:43] 2025-07-29 03:52:11,338 | INFO     | event service: False
[2025-07-28 23:52:43] 2025-07-29 03:52:11,339 | INFO     | sizes: {0: 2391858, 1: 2391858, 6: 2392148, 11: 2392176, 7868: 2419860, 7869: 2419859, 7870: 2429097, 7877: 2429263}
[2025-07-28 23:52:43] 2025-07-29 03:52:11,339 | INFO     | --------------------------------------------------
[2025-07-28 23:52:43] 2025-07-29 03:52:11,339 | INFO     | 
[2025-07-28 23:52:43] 2025-07-29 03:52:11,339 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 23:52:43] 2025-07-29 03:52:11,367 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,368 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,368 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,368 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,368 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,369 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,369 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,369 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,369 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,370 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,370 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,370 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,370 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,370 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,371 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,371 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,371 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 23:52:43] 2025-07-29 03:52:11,372 | INFO     | job 6749258388 has completed (purged errors)
[2025-07-28 23:52:43] 2025-07-29 03:52:11,372 | INFO     | overall cleanup function is called
[2025-07-28 23:52:43] 2025-07-29 03:52:11,452 | INFO     | PID=8744 has CPU usage=7.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 23:52:43] 2025-07-29 03:52:12,379 | INFO     | --- collectZombieJob: --- 10, [15234]
[2025-07-28 23:52:43] 2025-07-29 03:52:12,380 | INFO     | zombie collector waiting for pid 15234
[2025-07-28 23:52:43] 2025-07-29 03:52:12,380 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 23:52:43] 2025-07-29 03:52:12,381 | INFO     | collected zombie processes
[2025-07-28 23:52:43] 2025-07-29 03:52:12,381 | INFO     | will attempt to kill all subprocesses of pid=15234
[2025-07-28 23:52:43] 2025-07-29 03:52:12,462 | INFO     | process IDs to be killed: [15234] (in reverse order)
[2025-07-28 23:52:43] 2025-07-29 03:52:12,519 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 23:52:43] 2025-07-29 03:52:12,520 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 23:52:43] 2025-07-29 03:52:12,524 | INFO     | did not find any defunct processes belonging to 15234
[2025-07-28 23:52:43] 2025-07-29 03:52:12,527 | INFO     | did not find any defunct processes belonging to 15234
[2025-07-28 23:52:43] 2025-07-29 03:52:12,528 | INFO     | ready for new job
[2025-07-28 23:52:43] 2025-07-29 03:52:12,528 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 23:52:43] 2025-07-29 03:52:12,529 | INFO     | ***************************************
[2025-07-28 23:52:43] 2025-07-29 03:52:12,530 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 23:52:43] 2025-07-29 03:52:12,530 | INFO     | ***************************************
[2025-07-28 23:52:43] 2025-07-29 03:52:12,530 | INFO     | 
[2025-07-28 23:52:43] 2025-07-29 03:52:12,530 | INFO     | architecture information:
[2025-07-28 23:52:43] 2025-07-29 03:52:12,531 | INFO     | executing command: cat /etc/os-release
[2025-07-28 23:52:43] 2025-07-29 03:52:12,549 | INFO     | cat /etc/os-release:
[2025-07-28 23:52:43] NAME="CentOS Linux"
[2025-07-28 23:52:43] VERSION="7 (Core)"
[2025-07-28 23:52:43] ID="centos"
[2025-07-28 23:52:43] ID_LIKE="rhel fedora"
[2025-07-28 23:52:43] VERSION_ID="7"
[2025-07-28 23:52:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 23:52:43] ANSI_COLOR="0;31"
[2025-07-28 23:52:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 23:52:43] HOME_URL="https://www.centos.org/"
[2025-07-28 23:52:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 23:52:43] 
[2025-07-28 23:52:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 23:52:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 23:52:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 23:52:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 23:52:43] 
[2025-07-28 23:52:43] 2025-07-29 03:52:12,549 | INFO     | ***************************************
[2025-07-28 23:52:43] 2025-07-29 03:52:13,053 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 23:52:43] 2025-07-29 03:52:13,074 | INFO     | sufficient remaining disk space (18729664512 B)
[2025-07-28 23:52:43] 2025-07-29 03:52:13,074 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 23:52:43] 2025-07-29 03:52:13,074 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 23:52:43] 2025-07-29 03:52:13,075 | INFO     | update_server=False
[2025-07-28 23:52:43] 2025-07-29 03:52:13,075 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 23:52:43] 2025-07-29 03:52:13,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 23:52:43] 2025-07-29 03:52:13,075 | INFO     | aborting loop
[2025-07-28 23:52:43] 2025-07-29 03:52:13,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 23:52:43] 2025-07-29 03:52:13,173 | INFO     | all job control threads have been joined
[2025-07-28 23:52:43] 2025-07-29 03:52:13,884 | INFO     | all data control threads have been joined
[2025-07-28 23:52:43] 2025-07-29 03:52:13,910 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 23:52:43] 2025-07-29 03:52:14,055 | INFO     | all payload control threads have been joined
[2025-07-28 23:52:43] 2025-07-29 03:52:14,080 | INFO     | [job] retrieve thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,081 | INFO     | [job] job monitor thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,082 | INFO     | [job] queue monitor thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,114 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 23:52:43] 2025-07-29 03:52:14,179 | INFO     | [job] control thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,360 | INFO     | [payload] failed_post thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,449 | INFO     | [job] validate thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,683 | INFO     | [payload] validate_post thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,889 | INFO     | [data] control thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,951 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:14,951 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:15,041 | INFO     | [data] copytool_in thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:15,048 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:15,060 | INFO     | [payload] control thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:15,915 | INFO     | [data] copytool_out thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:18,116 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:23,946 | INFO     | job.realtimelogging is not enabled
[2025-07-28 23:52:43] 2025-07-29 03:52:24,949 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 23:52:43] 2025-07-29 03:52:26,286 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931405653824)>', '<ExcThread(monitor, started 139930688804608)>']
[2025-07-28 23:52:43] 2025-07-29 03:52:31,294 | INFO     | all workflow threads have been joined
[2025-07-28 23:52:43] 2025-07-29 03:52:31,295 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 23:52:43] 2025-07-29 03:52:31,295 | INFO     | traces error code: 0
[2025-07-28 23:52:43] 2025-07-29 03:52:31,296 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 23:52:43] 2025-07-29 03:52:43,640 | INFO     | PID=8744 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 23:52:43] 2025-07-29 03:52:43,641 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 23:52:43] 2025-07-29 03:52:43,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 23:52:43] 2025-07-29 03:52:43,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 23:52:43] 2025-07-29 03:52:43,641 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 23:52:43] 2025-07-29 03:52:43,642 | INFO     | [monitor] control thread has ended
[2025-07-28 23:52:43] 2025-07-29 03:52:43,756 [wrapper] ==== pilot stdout END ====
[2025-07-28 23:52:43] 2025-07-29 03:52:43,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 23:52:43] 2025-07-29 03:52:43,764 [wrapper] pilotpid: 8744
[2025-07-28 23:52:43] 2025-07-29 03:52:43,769 [wrapper] Pilot exit status: 0
[2025-07-28 23:52:43] 2025-07-29 03:52:43,787 [wrapper] pandaids: 6749258388
[2025-07-28 23:52:43] 2025-07-29 03:52:43,829 [wrapper] cleanup supervisor_pilot 19399 8745
[2025-07-28 23:52:43] 2025-07-29 03:52:43,834 [wrapper] Test setup, not cleaning
[2025-07-28 23:52:43] 2025-07-29 03:52:43,838 [wrapper] apfmon messages muted
[2025-07-28 23:52:43] 2025-07-29 03:52:43,843 [wrapper] ==== wrapper stdout END ====
[2025-07-28 23:52:43] 2025-07-29 03:52:43,847 [wrapper] ==== wrapper stderr END ====
[2025-07-28 23:52:43]  *** Error codes and diagnostics ***
[2025-07-28 23:52:43]     "exeErrorCode": 0,
[2025-07-28 23:52:43]     "exeErrorDiag": "",
[2025-07-28 23:52:43]     "pilotErrorCode": 0,
[2025-07-28 23:52:43]     "pilotErrorDiag": "",
[2025-07-28 23:52:43]  *** Listing of results directory ***
[2025-07-28 23:52:43] total 356084
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 21:03 pilot3.tar.gz
[2025-07-28 23:52:43] -rwx------ 1 boincer umatlas     36292 Jul 28 21:39 runpilot2-wrapper.sh
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 21:39 queuedata.json
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas       100 Jul 28 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 23:52:43] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 21:40 run_atlas
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas       105 Jul 28 21:40 job.xml
[2025-07-28 23:52:43] -rw-r--r-- 2 boincer umatlas 149586264 Jul 28 21:40 EVNT.45743347._002868.pool.root.1
[2025-07-28 23:52:43] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 21:40 start_atlas.sh
[2025-07-28 23:52:43] drwxrwx--x 2 boincer umatlas      4096 Jul 28 21:40 shared
[2025-07-28 23:52:43] -rw-r--r-- 2 boincer umatlas    542897 Jul 28 21:40 input.tar.gz
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas         0 Jul 28 21:40 boinc_lockfile
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas      2562 Jul 28 21:40 pandaJob.out
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas    977340 Jul 28 21:40 agis_schedconf.cvmfs.json
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas   1589827 Jul 28 21:40 agis_ddmendpoints.agis.ALL.json
[2025-07-28 23:52:43] drwx------ 4 boincer umatlas      4096 Jul 28 21:40 pilot3
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas      5825 Jul 28 23:47 init_data.xml
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas 209037659 Jul 28 23:51 HITS.45743349._056565.pool.root.1
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas       529 Jul 28 23:51 boinc_task_state.xml
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas      1044 Jul 28 23:51 memory_monitor_summary.json
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas    347986 Jul 28 23:52 log.45743349._056565.job.log.tgz.1
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas      7843 Jul 28 23:52 heartbeat.json
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas        27 Jul 28 23:52 wrapper_checkpoint.txt
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 23:52 boinc_mmap_file
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas        95 Jul 28 23:52 pilot_heartbeat.json
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas       744 Jul 28 23:52 pilotlog.txt
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas    721986 Jul 28 23:52 log.45743349._056565.job.log.1
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas       357 Jul 28 23:52 output.list
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas       620 Jul 28 23:52 runtime_log
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas   1085440 Jul 28 23:52 result.tar.gz
[2025-07-28 23:52:43] -rw------- 1 boincer umatlas       661 Jul 28 23:52 UfOMDmxUo07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmGkWLDmlpXsan.diag
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas      8660 Jul 28 23:52 runtime_log.err
[2025-07-28 23:52:43] -rw-r--r-- 1 boincer umatlas     21233 Jul 28 23:52 stderr.txt
[2025-07-28 23:52:44] HITS file was successfully produced:
[2025-07-28 23:52:44] -rw------- 1 boincer umatlas 209037659 Jul 28 23:51 shared/HITS.pool.root.1
[2025-07-28 23:52:44]  *** Contents of shared directory: ***
[2025-07-28 23:52:44] total 351836
[2025-07-28 23:52:44] -rw-r--r-- 2 boincer umatlas 149586264 Jul 28 21:40 ATLAS.root_0
[2025-07-28 23:52:44] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 21:40 start_atlas.sh
[2025-07-28 23:52:44] -rw-r--r-- 2 boincer umatlas    542897 Jul 28 21:40 input.tar.gz
[2025-07-28 23:52:44] -rw------- 1 boincer umatlas 209037659 Jul 28 23:51 HITS.pool.root.1
[2025-07-28 23:52:44] -rw------- 1 boincer umatlas   1085440 Jul 28 23:52 result.tar.gz
23:52:45 (4780): run_atlas exited; CPU time 58938.431354
23:52:45 (4780): called boinc_finish(0)

</stderr_txt>
]]>

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