Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:39:35 (342355): wrapper (7.7.26015): starting
21:39:35 (342355): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 21:39:35] Arguments: --nthreads 8
[2025-07-28 21:39:35] Threads: 8
[2025-07-28 21:39:35] Checking for CVMFS
[2025-07-28 21:39:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 21:39:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 21:39:35] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 21:39:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 21:39:35] 2.13.0.0 99742 29462 377712 148871 3 894 27436244 32935937 23968 16776704 1 267160823 99.615 300303260 20331 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 21:39:35] CVMFS is ok
[2025-07-28 21:39:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 21:39:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 21:39:35] Further information can be found at the LHC@home message board.
[2025-07-28 21:39:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 21:39:35] Checking for apptainer binary...
[2025-07-28 21:39:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 21:39:35] Running /usr/bin/apptainer --version
[2025-07-28 21:39:35] apptainer version 1.4.1-1.el9
[2025-07-28 21:39:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 21:39:35] c7-6-31.aglt2.org
[2025-07-28 21:39:35] apptainer works
[2025-07-28 21:39:36] Set ATHENA_PROC_NUMBER=8
[2025-07-28 21:39:36] Set ATHENA_CORE_NUMBER=8
[2025-07-28 21:39:36] Starting ATLAS job with PandaID=6745388473
[2025-07-28 21:39:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 23:03:04]  *** The last 200 lines of the pilot log: ***
[2025-07-28 23:03:04]  mtime=0
[2025-07-28 23:03:04]  protocol_id=None
[2025-07-28 23:03:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 23:03:04]  replicas=None
[2025-07-28 23:03:04]  scope=mc23_13p6TeV
[2025-07-28 23:03:04]  status=None
[2025-07-28 23:03:04]  status_code=0
[2025-07-28 23:03:04]  storage_token=
[2025-07-28 23:03:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745388473/log.45743349._043522.job.log.tgz.1
[2025-07-28 23:03:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/75/log.45743349._043522.job.log.tgz.1
[2025-07-28 23:03:04]  workdir=None
[2025-07-28 23:03:04] ]
[2025-07-28 23:03:04] 2025-07-29 03:02:24,140 | INFO     | transferring file log.45743349._043522.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745388473/log.45743349._043522.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 23:03:04] 2025-07-29 03:02:24,141 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745388473/log.45743349._043522.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._043522.job
[2025-07-28 23:03:04] 2025-07-29 03:02:24,167 | INFO     | adding to output.list: log.45743349._043522.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/75/log.45743349._043522.job.log.tg
[2025-07-28 23:03:04] 2025-07-29 03:02:24,168 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 23:03:04] 2025-07-29 03:02:24,168 | INFO     | summary of transferred files:
[2025-07-28 23:03:04] 2025-07-29 03:02:24,168 | INFO     |  -- lfn=log.45743349._043522.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 23:03:04] 2025-07-29 03:02:24,168 | INFO     | stage-out finished correctly
[2025-07-28 23:03:04] 2025-07-29 03:02:24,420 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 23:03:04] 2025-07-29 03:02:25,835 | INFO     | monitor loop #356: job 0:6745388473 is in state 'finished'
[2025-07-28 23:03:04] 2025-07-29 03:02:25,835 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 23:03:04] 2025-07-29 03:02:26,697 | INFO     | job 6745388473 has state=finished
[2025-07-28 23:03:04] 2025-07-29 03:02:26,697 | INFO     | preparing for final server update for job 6745388473 in state='finished'
[2025-07-28 23:03:04] 2025-07-29 03:02:26,698 | INFO     | this job has now completed (state=finished)
[2025-07-28 23:03:04] 2025-07-29 03:02:26,698 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 23:03:04] 2025-07-29 03:02:26,698 | INFO     | log transfer has been attempted: DONE
[2025-07-28 23:03:04] 2025-07-29 03:02:26,699 | INFO     | job 6745388473 has finished - writing final server update
[2025-07-28 23:03:04] 2025-07-29 03:02:26,699 | INFO     | total number of processed events: 400 (read)
[2025-07-28 23:03:04] 2025-07-29 03:02:26,710 | INFO     | executing command: lscpu
[2025-07-28 23:03:04] 2025-07-29 03:02:26,794 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 23:03:04] 2025-07-29 03:02:28,339 | INFO     | monitor loop #357: job 0:6745388473 is in state 'finished'
[2025-07-28 23:03:04] 2025-07-29 03:02:28,339 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 23:03:04] 2025-07-29 03:02:29,576 | INFO     | PID=350161 has CPU usage=16.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 23:03:04] 2025-07-29 03:02:29,577 | INFO     | .. there are 20 such processes running
[2025-07-28 23:03:04] 2025-07-29 03:02:30,842 | INFO     | monitor loop #358: job 0:6745388473 is in state 'finished'
[2025-07-28 23:03:04] 2025-07-29 03:02:30,843 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 23:03:04] 2025-07-29 03:02:32,301 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 23:03:04] 2025-07-29 03:02:32,313 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3182.0336249999996
[2025-07-28 23:03:04] 2025-07-29 03:02:32,328 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745388473/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 23:03:04] 2025-07-29 03:02:32,328 | INFO     | extracted standard info from prmon json
[2025-07-28 23:03:04] 2025-07-29 03:02:32,329 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 23:03:04] 2025-07-29 03:02:32,329 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 23:03:04] 2025-07-29 03:02:32,329 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 23:03:04] 2025-07-29 03:02:32,329 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 23:03:04] 2025-07-29 03:02:32,331 | INFO     | fitting pss+swap vs Time
[2025-07-28 23:03:04] 2025-07-29 03:02:32,332 | INFO     | sum of square deviations: 125630262.5
[2025-07-28 23:03:04] 2025-07-29 03:02:32,332 | INFO     | sum of deviations: -12602235159.0
[2025-07-28 23:03:04] 2025-07-29 03:02:32,332 | INFO     | mean x: 1753755752.5
[2025-07-28 23:03:04] 2025-07-29 03:02:32,332 | INFO     | mean y: 2341500.7027027025
[2025-07-28 23:03:04] 2025-07-29 03:02:32,332 | INFO     | -- intersect: 175925259790.0281
[2025-07-28 23:03:04] 2025-07-29 03:02:32,332 | INFO     | intersect: 175925259790.0281
[2025-07-28 23:03:04] 2025-07-29 03:02:32,332 | INFO     | chi2: 0.202042491497446
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | -- intersect: 175925259790.0281
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | current memory leak: -100.31 B/s (using 74 data points, chi2=0.20)
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | could have reported an average CPU frequency of 3163 MHz (6 samples)
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | ..............................
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | . Timing measurements:
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | . get job = 0 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | . initial setup = 3 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | . payload setup = 10 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,333 | INFO     | . stage-in = 0 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,334 | INFO     | . payload execution = 4924 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,334 | INFO     | . stage-out = 0 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,334 | INFO     | . log creation = 0 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,334 | INFO     | ..............................
[2025-07-28 23:03:04] 2025-07-29 03:02:32,412 | INFO     | 
[2025-07-28 23:03:04] 2025-07-29 03:02:32,413 | INFO     | job summary report
[2025-07-28 23:03:04] 2025-07-29 03:02:32,413 | INFO     | --------------------------------------------------
[2025-07-28 23:03:04] 2025-07-29 03:02:32,413 | INFO     | PanDA job id: 6745388473
[2025-07-28 23:03:04] 2025-07-29 03:02:32,413 | INFO     | task id: 45743349
[2025-07-28 23:03:04] 2025-07-29 03:02:32,413 | INFO     | errors: (none)
[2025-07-28 23:03:04] 2025-07-29 03:02:32,413 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | pilot state: finished 
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | transexitcode: 0
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | exeerrorcode: 0
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | exeerrordiag: 
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | exitcode: 0
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | exitmsg: OK
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | cpuconsumptiontime: 35487 s
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | nevents: 400
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | neventsw: 0
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | pid: 366941
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | pgrp: 366941
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | corecount: 8
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | event service: False
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | sizes: {0: 2391909, 6: 2392171, 11: 2392199, 4938: 2418398, 4939: 2427452, 4947: 2427590}
[2025-07-28 23:03:04] 2025-07-29 03:02:32,414 | INFO     | --------------------------------------------------
[2025-07-28 23:03:04] 2025-07-29 03:02:32,415 | INFO     | 
[2025-07-28 23:03:04] 2025-07-29 03:02:32,415 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 23:03:04] 2025-07-29 03:02:32,442 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,442 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,442 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,442 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,442 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,442 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,443 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 23:03:04] 2025-07-29 03:02:32,444 | INFO     | job 6745388473 has completed (purged errors)
[2025-07-28 23:03:04] 2025-07-29 03:02:32,444 | INFO     | overall cleanup function is called
[2025-07-28 23:03:04] 2025-07-29 03:02:33,452 | INFO     | --- collectZombieJob: --- 10, [366941]
[2025-07-28 23:03:04] 2025-07-29 03:02:33,454 | INFO     | zombie collector waiting for pid 366941
[2025-07-28 23:03:04] 2025-07-29 03:02:33,454 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 23:03:04] 2025-07-29 03:02:33,454 | INFO     | collected zombie processes
[2025-07-28 23:03:04] 2025-07-29 03:02:33,455 | INFO     | will attempt to kill all subprocesses of pid=366941
[2025-07-28 23:03:04] 2025-07-29 03:02:33,985 | INFO     | process IDs to be killed: [366941] (in reverse order)
[2025-07-28 23:03:04] 2025-07-29 03:02:34,172 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 23:03:04] 2025-07-29 03:02:34,173 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 23:03:04] 2025-07-29 03:02:34,197 | INFO     | did not find any defunct processes belonging to 366941
[2025-07-28 23:03:04] 2025-07-29 03:02:34,220 | INFO     | did not find any defunct processes belonging to 366941
[2025-07-28 23:03:04] 2025-07-29 03:02:34,221 | INFO     | ready for new job
[2025-07-28 23:03:04] 2025-07-29 03:02:34,221 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 23:03:04] 2025-07-29 03:02:34,224 | INFO     | ***************************************
[2025-07-28 23:03:04] 2025-07-29 03:02:34,224 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 23:03:04] 2025-07-29 03:02:34,225 | INFO     | ***************************************
[2025-07-28 23:03:04] 2025-07-29 03:02:34,225 | INFO     | 
[2025-07-28 23:03:04] 2025-07-29 03:02:34,243 | INFO     | architecture information:
[2025-07-28 23:03:04] 2025-07-29 03:02:34,244 | INFO     | executing command: cat /etc/os-release
[2025-07-28 23:03:04] 2025-07-29 03:02:34,267 | INFO     | cat /etc/os-release:
[2025-07-28 23:03:04] NAME="CentOS Linux"
[2025-07-28 23:03:04] VERSION="7 (Core)"
[2025-07-28 23:03:04] ID="centos"
[2025-07-28 23:03:04] ID_LIKE="rhel fedora"
[2025-07-28 23:03:04] VERSION_ID="7"
[2025-07-28 23:03:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 23:03:04] ANSI_COLOR="0;31"
[2025-07-28 23:03:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 23:03:04] HOME_URL="https://www.centos.org/"
[2025-07-28 23:03:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 23:03:04] 
[2025-07-28 23:03:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 23:03:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 23:03:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 23:03:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 23:03:04] 
[2025-07-28 23:03:04] 2025-07-29 03:02:34,267 | INFO     | ***************************************
[2025-07-28 23:03:04] 2025-07-29 03:02:34,771 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 23:03:04] 2025-07-29 03:02:34,795 | INFO     | sufficient remaining disk space (76746326016 B)
[2025-07-28 23:03:04] 2025-07-29 03:02:34,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 23:03:04] 2025-07-29 03:02:34,796 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 23:03:04] 2025-07-29 03:02:34,796 | INFO     | update_server=False
[2025-07-28 23:03:04] 2025-07-29 03:02:34,796 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 23:03:04] 2025-07-29 03:02:34,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 23:03:04] 2025-07-29 03:02:34,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 23:03:04] 2025-07-29 03:02:34,802 | INFO     | aborting loop
[2025-07-28 23:03:04] 2025-07-29 03:02:35,011 | INFO     | all payload control threads have been joined
[2025-07-28 23:03:04] 2025-07-29 03:02:35,021 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 23:03:04] 2025-07-29 03:02:35,257 | INFO     | all job control threads have been joined
[2025-07-28 23:03:04] 2025-07-29 03:02:35,802 | INFO     | [job] retrieve thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:35,808 | INFO     | [job] job monitor thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:35,831 | INFO     | all data control threads have been joined
[2025-07-28 23:03:04] 2025-07-29 03:02:36,017 | INFO     | [payload] control thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,021 | INFO     | [data] copytool_in thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,263 | INFO     | [job] control thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,293 | INFO     | [payload] failed_post thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,319 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,463 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,644 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,804 | INFO     | [data] copytool_out thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,836 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,836 | INFO     | [job] validate thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:36,836 | INFO     | [data] control thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:37,194 | INFO     | [payload] validate_post thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:37,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 23:03:04] 2025-07-29 03:02:38,431 | INFO     | [job] queue monitor thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:39,030 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 23:03:04] 2025-07-29 03:02:39,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140117238781760)>', '<ExcThread(monitor, started 140116513249024)>']
[2025-07-28 23:03:04] 2025-07-29 03:02:44,264 | INFO     | all workflow threads have been joined
[2025-07-28 23:03:04] 2025-07-29 03:02:44,264 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 23:03:04] 2025-07-29 03:02:44,264 | INFO     | traces error code: 0
[2025-07-28 23:03:04] 2025-07-29 03:02:44,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 23:03:04] 2025-07-29 03:03:04,397 | INFO     | PID=350161 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 23:03:04] 2025-07-29 03:03:04,398 | INFO     | .. there are 20 such processes running
[2025-07-28 23:03:04] 2025-07-29 03:03:04,398 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 23:03:04] 2025-07-29 03:03:04,398 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 23:03:04] 2025-07-29 03:03:04,398 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 23:03:04] 2025-07-29 03:03:04,398 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 23:03:04] 2025-07-29 03:03:04,398 | INFO     | [monitor] control thread has ended
[2025-07-28 23:03:04] 2025-07-29 03:03:04,677 [wrapper] ==== pilot stdout END ====
[2025-07-28 23:03:04] 2025-07-29 03:03:04,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 23:03:04] 2025-07-29 03:03:04,684 [wrapper] pilotpid: 350161
[2025-07-28 23:03:04] 2025-07-29 03:03:04,687 [wrapper] Pilot exit status: 0
[2025-07-28 23:03:04] 2025-07-29 03:03:04,703 [wrapper] pandaids: 6745388473
[2025-07-28 23:03:04] 2025-07-29 03:03:04,822 [wrapper] cleanup supervisor_pilot 2053141 350162
[2025-07-28 23:03:04] 2025-07-29 03:03:04,825 [wrapper] Test setup, not cleaning
[2025-07-28 23:03:04] 2025-07-29 03:03:04,828 [wrapper] apfmon messages muted
[2025-07-28 23:03:04] 2025-07-29 03:03:04,830 [wrapper] ==== wrapper stdout END ====
[2025-07-28 23:03:04] 2025-07-29 03:03:04,833 [wrapper] ==== wrapper stderr END ====
[2025-07-28 23:03:04]  *** Error codes and diagnostics ***
[2025-07-28 23:03:04]     "exeErrorCode": 0,
[2025-07-28 23:03:04]     "exeErrorDiag": "",
[2025-07-28 23:03:04]     "pilotErrorCode": 0,
[2025-07-28 23:03:04]     "pilotErrorDiag": "",
[2025-07-28 23:03:04]  *** Listing of results directory ***
[2025-07-28 23:03:04] total 352048
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 15:43 pilot3.tar.gz
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 16:04 queuedata.json
[2025-07-28 23:03:04] -rwx------. 1 boincer umatlas     36292 Jul 26 16:05 runpilot2-wrapper.sh
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas       100 Jul 28 21:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 23:03:04] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 21:39 run_atlas
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas       105 Jul 28 21:39 job.xml
[2025-07-28 23:03:04] -rw-r--r--. 2 boincer umatlas 146425274 Jul 28 21:39 EVNT.45743347._002486.pool.root.1
[2025-07-28 23:03:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 21:39 start_atlas.sh
[2025-07-28 23:03:04] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 21:39 shared
[2025-07-28 23:03:04] -rw-r--r--. 2 boincer umatlas    542895 Jul 28 21:39 input.tar.gz
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas         0 Jul 28 21:39 boinc_lockfile
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas      2563 Jul 28 21:39 pandaJob.out
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas    977340 Jul 28 21:39 agis_schedconf.cvmfs.json
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas   1589827 Jul 28 21:39 agis_ddmendpoints.agis.ALL.json
[2025-07-28 23:03:04] drwx------. 4 boincer umatlas      4096 Jul 28 21:39 pilot3
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas      6932 Jul 28 22:55 init_data.xml
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas 208624379 Jul 28 23:01 HITS.45743349._043522.pool.root.1
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas       530 Jul 28 23:01 boinc_task_state.xml
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas        95 Jul 28 23:02 pilot_heartbeat.json
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas      1034 Jul 28 23:02 memory_monitor_summary.json
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas    306851 Jul 28 23:02 log.45743349._043522.job.log.tgz.1
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas      7778 Jul 28 23:02 heartbeat.json
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas        27 Jul 28 23:03 wrapper_checkpoint.txt
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 23:03 boinc_mmap_file
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas       822 Jul 28 23:03 pilotlog.txt
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas    482352 Jul 28 23:03 log.45743349._043522.job.log.1
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas       357 Jul 28 23:03 output.list
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas       620 Jul 28 23:03 runtime_log
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas    808960 Jul 28 23:03 result.tar.gz
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 23:03 runtime_log.err
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas       652 Jul 28 23:03 ntWKDmrJ0z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAzSLDmT6P7Cn.diag
[2025-07-28 23:03:04] -rw-r--r--. 1 boincer umatlas     21793 Jul 28 23:03 stderr.txt
[2025-07-28 23:03:04] HITS file was successfully produced:
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas 208624379 Jul 28 23:01 shared/HITS.pool.root.1
[2025-07-28 23:03:04]  *** Contents of shared directory: ***
[2025-07-28 23:03:04] total 348076
[2025-07-28 23:03:04] -rw-r--r--. 2 boincer umatlas 146425274 Jul 28 21:39 ATLAS.root_0
[2025-07-28 23:03:04] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 21:39 start_atlas.sh
[2025-07-28 23:03:04] -rw-r--r--. 2 boincer umatlas    542895 Jul 28 21:39 input.tar.gz
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas 208624379 Jul 28 23:01 HITS.pool.root.1
[2025-07-28 23:03:04] -rw-------. 1 boincer umatlas    808960 Jul 28 23:03 result.tar.gz
23:03:06 (342355): run_atlas exited; CPU time 35598.213012
23:03:06 (342355): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN