Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:29:47 (2969905): wrapper (7.7.26015): starting
21:29:47 (2969905): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 21:29:47] Arguments: --nthreads 12
[2025-07-28 21:29:47] Threads: 12
[2025-07-28 21:29:47] Checking for CVMFS
[2025-07-28 21:29:47] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 21:29:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 21:29:47] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 21:29:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 21:29:47] 2.13.0.0 1395644 20585 295680 148871 2 16 21333284 32935936 9246 16776704 1 46315632 99.617 86035704 19485 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 21:29:47] CVMFS is ok
[2025-07-28 21:29:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 21:29:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 21:29:47] Further information can be found at the LHC@home message board.
[2025-07-28 21:29:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 21:29:47] Checking for apptainer binary...
[2025-07-28 21:29:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 21:29:47] Running /usr/bin/apptainer --version
[2025-07-28 21:29:47] apptainer version 1.4.1-1.el9
[2025-07-28 21:29:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 21:29:48] c6-6-39-2.aglt2.org
[2025-07-28 21:29:48] apptainer works
[2025-07-28 21:29:48] Set ATHENA_PROC_NUMBER=12
[2025-07-28 21:29:48] Set ATHENA_CORE_NUMBER=12
[2025-07-28 21:29:48] Starting ATLAS job with PandaID=6745067054
[2025-07-28 21:29:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 22:49:52]  *** The last 200 lines of the pilot log: ***
[2025-07-28 22:49:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 22:49:52]  replicas=None
[2025-07-28 22:49:52]  scope=mc23_13p6TeV
[2025-07-28 22:49:52]  status=None
[2025-07-28 22:49:52]  status_code=0
[2025-07-28 22:49:52]  storage_token=
[2025-07-28 22:49:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745067054/log.45743349._029410.job.log.tgz.1
[2025-07-28 22:49:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/f8/log.45743349._029410.job.log.tgz.1
[2025-07-28 22:49:52]  workdir=None
[2025-07-28 22:49:52] ]
[2025-07-28 22:49:52] 2025-07-29 02:49:09,991 | INFO     | transferring file log.45743349._029410.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745067054/log.45743349._029410.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 22:49:52] 2025-07-29 02:49:09,991 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745067054/log.45743349._029410.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._029410.job
[2025-07-28 22:49:52] 2025-07-29 02:49:10,014 | INFO     | adding to output.list: log.45743349._029410.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9c/f8/log.45743349._029410.job.log.tg
[2025-07-28 22:49:52] 2025-07-29 02:49:10,015 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 22:49:52] 2025-07-29 02:49:10,015 | INFO     | summary of transferred files:
[2025-07-28 22:49:52] 2025-07-29 02:49:10,015 | INFO     |  -- lfn=log.45743349._029410.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 22:49:52] 2025-07-29 02:49:10,015 | INFO     | stage-out finished correctly
[2025-07-28 22:49:52] 2025-07-29 02:49:12,010 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 22:49:52] 2025-07-29 02:49:12,086 | INFO     | monitor loop #328: job 0:6745067054 is in state 'finished'
[2025-07-28 22:49:52] 2025-07-29 02:49:12,091 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:49:52] 2025-07-29 02:49:14,596 | INFO     | monitor loop #329: job 0:6745067054 is in state 'finished'
[2025-07-28 22:49:52] 2025-07-29 02:49:14,597 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:49:52] 2025-07-29 02:49:15,048 | INFO     | job 6745067054 has state=finished
[2025-07-28 22:49:52] 2025-07-29 02:49:15,049 | INFO     | preparing for final server update for job 6745067054 in state='finished'
[2025-07-28 22:49:52] 2025-07-29 02:49:15,049 | INFO     | this job has now completed (state=finished)
[2025-07-28 22:49:52] 2025-07-29 02:49:15,050 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 22:49:52] 2025-07-29 02:49:15,050 | INFO     | log transfer has been attempted: DONE
[2025-07-28 22:49:52] 2025-07-29 02:49:15,050 | INFO     | job 6745067054 has finished - writing final server update
[2025-07-28 22:49:52] 2025-07-29 02:49:15,051 | INFO     | total number of processed events: 400 (read)
[2025-07-28 22:49:52] 2025-07-29 02:49:15,052 | INFO     | executing command: lscpu
[2025-07-28 22:49:52] 2025-07-29 02:49:15,113 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 22:49:52] 2025-07-29 02:49:17,100 | INFO     | monitor loop #330: job 0:6745067054 is in state 'finished'
[2025-07-28 22:49:52] 2025-07-29 02:49:17,101 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:49:52] 2025-07-29 02:49:19,608 | INFO     | monitor loop #331: job 0:6745067054 is in state 'finished'
[2025-07-28 22:49:52] 2025-07-29 02:49:19,608 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:49:52] 2025-07-29 02:49:19,899 | INFO     | PID=2974109 has CPU usage=10.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 22:49:52] 2025-07-29 02:49:19,899 | INFO     | .. there are 11 such processes running
[2025-07-28 22:49:52] 2025-07-29 02:49:20,075 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 22:49:52] 2025-07-29 02:49:20,078 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2812.6520000000005
[2025-07-28 22:49:52] 2025-07-29 02:49:20,101 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745067054/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 22:49:52] 2025-07-29 02:49:20,102 | INFO     | extracted standard info from prmon json
[2025-07-28 22:49:52] 2025-07-29 02:49:20,103 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 22:49:52] 2025-07-29 02:49:20,103 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 22:49:52] 2025-07-29 02:49:20,103 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 22:49:52] 2025-07-29 02:49:20,103 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 22:49:52] 2025-07-29 02:49:20,105 | INFO     | fitting pss+swap vs Time
[2025-07-28 22:49:52] 2025-07-29 02:49:20,105 | INFO     | sum of square deviations: 110963882.87323947
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | sum of deviations: -14944928536.929577
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | mean x: 1753755068.0422535
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | mean y: 2557421.3098591547
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | -- intersect: 236203233573.84198
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | intersect: 236203233573.84198
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | chi2: 0.13984100595486856
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | -- intersect: 236203233573.84198
[2025-07-28 22:49:52] 2025-07-29 02:49:20,106 | INFO     | current memory leak: -134.68 B/s (using 71 data points, chi2=0.14)
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | could have reported an average CPU frequency of 2824 MHz (6 samples)
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | ..............................
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . Timing measurements:
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . get job = 0 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . initial setup = 3 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . payload setup = 6 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . stage-in = 0 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . payload execution = 4722 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . stage-out = 1 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | . log creation = 0 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,107 | INFO     | ..............................
[2025-07-28 22:49:52] 2025-07-29 02:49:20,223 | INFO     | 
[2025-07-28 22:49:52] 2025-07-29 02:49:20,224 | INFO     | job summary report
[2025-07-28 22:49:52] 2025-07-29 02:49:20,224 | INFO     | --------------------------------------------------
[2025-07-28 22:49:52] 2025-07-29 02:49:20,224 | INFO     | PanDA job id: 6745067054
[2025-07-28 22:49:52] 2025-07-29 02:49:20,224 | INFO     | task id: 45743349
[2025-07-28 22:49:52] 2025-07-29 02:49:20,224 | INFO     | errors: (none)
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | pilot state: finished 
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | transexitcode: 0
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | exeerrorcode: 0
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | exeerrordiag: 
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | exitcode: 0
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | exitmsg: OK
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | cpuconsumptiontime: 45146 s
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | nevents: 400
[2025-07-28 22:49:52] 2025-07-29 02:49:20,225 | INFO     | neventsw: 0
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | pid: 2981355
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | pgrp: 2981355
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | corecount: 12
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | event service: False
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | sizes: {0: 2391794, 1: 2391936, 5: 2392198, 11: 2392254, 4733: 2418588, 4734: 2427586, 4736: 2427770, 4744: 2427964}
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | --------------------------------------------------
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | 
[2025-07-28 22:49:52] 2025-07-29 02:49:20,226 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 22:49:52] 2025-07-29 02:49:20,251 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 22:49:52] 2025-07-29 02:49:20,253 | INFO     | job 6745067054 has completed (purged errors)
[2025-07-28 22:49:52] 2025-07-29 02:49:20,254 | INFO     | overall cleanup function is called
[2025-07-28 22:49:52] 2025-07-29 02:49:21,263 | INFO     | --- collectZombieJob: --- 10, [2981355]
[2025-07-28 22:49:52] 2025-07-29 02:49:21,263 | INFO     | zombie collector waiting for pid 2981355
[2025-07-28 22:49:52] 2025-07-29 02:49:21,263 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 22:49:52] 2025-07-29 02:49:21,264 | INFO     | collected zombie processes
[2025-07-28 22:49:52] 2025-07-29 02:49:21,264 | INFO     | will attempt to kill all subprocesses of pid=2981355
[2025-07-28 22:49:52] 2025-07-29 02:49:21,517 | INFO     | process IDs to be killed: [2981355] (in reverse order)
[2025-07-28 22:49:52] 2025-07-29 02:49:21,613 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 22:49:52] 2025-07-29 02:49:21,613 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 22:49:52] 2025-07-29 02:49:21,625 | INFO     | did not find any defunct processes belonging to 2981355
[2025-07-28 22:49:52] 2025-07-29 02:49:21,638 | INFO     | did not find any defunct processes belonging to 2981355
[2025-07-28 22:49:52] 2025-07-29 02:49:21,638 | INFO     | ready for new job
[2025-07-28 22:49:52] 2025-07-29 02:49:21,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 22:49:52] 2025-07-29 02:49:21,640 | INFO     | ***************************************
[2025-07-28 22:49:52] 2025-07-29 02:49:21,640 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 22:49:52] 2025-07-29 02:49:21,640 | INFO     | ***************************************
[2025-07-28 22:49:52] 2025-07-29 02:49:21,641 | INFO     | 
[2025-07-28 22:49:52] 2025-07-29 02:49:21,656 | INFO     | architecture information:
[2025-07-28 22:49:52] 2025-07-29 02:49:21,656 | INFO     | executing command: cat /etc/os-release
[2025-07-28 22:49:52] 2025-07-29 02:49:21,673 | INFO     | cat /etc/os-release:
[2025-07-28 22:49:52] NAME="CentOS Linux"
[2025-07-28 22:49:52] VERSION="7 (Core)"
[2025-07-28 22:49:52] ID="centos"
[2025-07-28 22:49:52] ID_LIKE="rhel fedora"
[2025-07-28 22:49:52] VERSION_ID="7"
[2025-07-28 22:49:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 22:49:52] ANSI_COLOR="0;31"
[2025-07-28 22:49:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 22:49:52] HOME_URL="https://www.centos.org/"
[2025-07-28 22:49:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 22:49:52] 
[2025-07-28 22:49:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 22:49:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 22:49:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 22:49:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 22:49:52] 
[2025-07-28 22:49:52] 2025-07-29 02:49:21,673 | INFO     | ***************************************
[2025-07-28 22:49:52] 2025-07-29 02:49:22,176 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 22:49:52] 2025-07-29 02:49:22,194 | INFO     | sufficient remaining disk space (73955016704 B)
[2025-07-28 22:49:52] 2025-07-29 02:49:22,195 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 22:49:52] 2025-07-29 02:49:22,195 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 22:49:52] 2025-07-29 02:49:22,195 | INFO     | update_server=False
[2025-07-28 22:49:52] 2025-07-29 02:49:22,195 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 22:49:52] 2025-07-29 02:49:22,196 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:49:52] 2025-07-29 02:49:22,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 22:49:52] 2025-07-29 02:49:22,996 | INFO     | all job control threads have been joined
[2025-07-28 22:49:52] 2025-07-29 02:49:23,088 | INFO     | all data control threads have been joined
[2025-07-28 22:49:52] 2025-07-29 02:49:23,117 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:49:52] 2025-07-29 02:49:23,118 | INFO     | aborting loop
[2025-07-28 22:49:52] 2025-07-29 02:49:23,164 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 22:49:52] 2025-07-29 02:49:23,200 | INFO     | [job] retrieve thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:23,201 | INFO     | [job] queue monitor thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:23,271 | INFO     | [data] copytool_in thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:23,323 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:23,414 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:23,508 | INFO     | all payload control threads have been joined
[2025-07-28 22:49:52] 2025-07-29 02:49:23,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:23,942 | INFO     | [payload] failed_post thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:24,000 | INFO     | [job] control thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:24,004 | INFO     | [job] validate thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:24,021 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:24,092 | INFO     | [data] control thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:24,122 | INFO     | [job] job monitor thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:24,443 | INFO     | [payload] validate_post thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:24,513 | INFO     | [payload] control thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:25,169 | INFO     | [data] copytool_out thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:26,626 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 22:49:52] 2025-07-29 02:49:27,317 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140304913696576)>', '<ExcThread(monitor, started 140304267065088)>']
[2025-07-28 22:49:52] 2025-07-29 02:49:32,342 | INFO     | all workflow threads have been joined
[2025-07-28 22:49:52] 2025-07-29 02:49:32,343 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 22:49:52] 2025-07-29 02:49:32,343 | INFO     | traces error code: 0
[2025-07-28 22:49:52] 2025-07-29 02:49:32,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 22:49:52] 2025-07-29 02:49:52,274 | INFO     | PID=2974109 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 22:49:52] 2025-07-29 02:49:52,275 | INFO     | .. there are 10 such processes running
[2025-07-28 22:49:52] 2025-07-29 02:49:52,276 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 22:49:52] 2025-07-29 02:49:52,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 22:49:52] 2025-07-29 02:49:52,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 22:49:52] 2025-07-29 02:49:52,276 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 22:49:52] 2025-07-29 02:49:52,276 | INFO     | [monitor] control thread has ended
[2025-07-28 22:49:52] 2025-07-29 02:49:52,477 [wrapper] ==== pilot stdout END ====
[2025-07-28 22:49:52] 2025-07-29 02:49:52,482 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 22:49:52] 2025-07-29 02:49:52,485 [wrapper] pilotpid: 2974109
[2025-07-28 22:49:52] 2025-07-29 02:49:52,490 [wrapper] Pilot exit status: 0
[2025-07-28 22:49:52] 2025-07-29 02:49:52,506 [wrapper] pandaids: 6745067054
[2025-07-28 22:49:52] 2025-07-29 02:49:52,574 [wrapper] cleanup supervisor_pilot 3276340 2974110
[2025-07-28 22:49:52] 2025-07-29 02:49:52,577 [wrapper] Test setup, not cleaning
[2025-07-28 22:49:52] 2025-07-29 02:49:52,580 [wrapper] apfmon messages muted
[2025-07-28 22:49:52] 2025-07-29 02:49:52,584 [wrapper] ==== wrapper stdout END ====
[2025-07-28 22:49:52] 2025-07-29 02:49:52,587 [wrapper] ==== wrapper stderr END ====
[2025-07-28 22:49:52]  *** Error codes and diagnostics ***
[2025-07-28 22:49:52]     "exeErrorCode": 0,
[2025-07-28 22:49:52]     "exeErrorDiag": "",
[2025-07-28 22:49:52]     "pilotErrorCode": 0,
[2025-07-28 22:49:52]     "pilotErrorDiag": "",
[2025-07-28 22:49:52]  *** Listing of results directory ***
[2025-07-28 22:49:52] total 432968
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 20:19 pilot3.tar.gz
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 20:24 queuedata.json
[2025-07-28 22:49:52] -rwx------. 1 boincer umatlas     36292 Jul 25 20:24 runpilot2-wrapper.sh
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas       100 Jul 28 21:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 22:49:52] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 21:29 run_atlas
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas       105 Jul 28 21:29 job.xml
[2025-07-28 22:49:52] -rw-r--r--. 2 boincer umatlas 229757160 Jul 28 21:29 EVNT.45743347._001651.pool.root.1
[2025-07-28 22:49:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 21:29 start_atlas.sh
[2025-07-28 22:49:52] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 21:29 shared
[2025-07-28 22:49:52] -rw-r--r--. 2 boincer umatlas    542888 Jul 28 21:29 input.tar.gz
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas         0 Jul 28 21:29 boinc_lockfile
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 21:29 pandaJob.out
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas    977340 Jul 28 21:29 agis_schedconf.cvmfs.json
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas   1589827 Jul 28 21:29 agis_ddmendpoints.agis.ALL.json
[2025-07-28 22:49:52] drwx------. 4 boincer umatlas      4096 Jul 28 21:30 pilot3
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas      6840 Jul 28 22:46 init_data.xml
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas 208087704 Jul 28 22:48 HITS.45743349._029410.pool.root.1
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas       530 Jul 28 22:48 boinc_task_state.xml
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas      1036 Jul 28 22:49 memory_monitor_summary.json
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas    366949 Jul 28 22:49 log.45743349._029410.job.log.tgz.1
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas      7836 Jul 28 22:49 heartbeat.json
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 22:49 boinc_mmap_file
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas        27 Jul 28 22:49 wrapper_checkpoint.txt
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas        95 Jul 28 22:49 pilot_heartbeat.json
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas       823 Jul 28 22:49 pilotlog.txt
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas    455903 Jul 28 22:49 log.45743349._029410.job.log.1
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas       357 Jul 28 22:49 output.list
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas       620 Jul 28 22:49 runtime_log
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas    839680 Jul 28 22:49 result.tar.gz
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas       654 Jul 28 22:49 tNoLDmqthz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm2pQLDmmImUKm.diag
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 22:49 runtime_log.err
[2025-07-28 22:49:52] -rw-r--r--. 1 boincer umatlas     22046 Jul 28 22:49 stderr.txt
[2025-07-28 22:49:52] HITS file was successfully produced:
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas 208087704 Jul 28 22:48 shared/HITS.pool.root.1
[2025-07-28 22:49:52]  *** Contents of shared directory: ***
[2025-07-28 22:49:52] total 428960
[2025-07-28 22:49:52] -rw-r--r--. 2 boincer umatlas 229757160 Jul 28 21:29 ATLAS.root_0
[2025-07-28 22:49:52] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 21:29 start_atlas.sh
[2025-07-28 22:49:52] -rw-r--r--. 2 boincer umatlas    542888 Jul 28 21:29 input.tar.gz
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas 208087704 Jul 28 22:48 HITS.pool.root.1
[2025-07-28 22:49:52] -rw-------. 1 boincer umatlas    839680 Jul 28 22:49 result.tar.gz
22:49:54 (2969905): run_atlas exited; CPU time 45215.772846
22:49:54 (2969905): called boinc_finish(0)

</stderr_txt>
]]>

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