Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:04:22 (25364): wrapper (7.7.26015): starting
21:04:22 (25364): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 21:04:22] Arguments: --nthreads 12
[2025-07-28 21:04:22] Threads: 12
[2025-07-28 21:04:22] Checking for CVMFS
[2025-07-28 21:04:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 21:04:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 21:04:22] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 21:04:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 21:04:22] 2.11.2.0 2949 114198 96660 148870 1 1 10930543 20275201 1 130560 0 39072819 99.971 8919524 10117 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 21:04:22] CVMFS is ok
[2025-07-28 21:04:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 21:04:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 21:04:22] Further information can be found at the LHC@home message board.
[2025-07-28 21:04:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 21:04:22] Checking for apptainer binary...
[2025-07-28 21:04:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 21:04:22] Running /usr/bin/apptainer --version
[2025-07-28 21:04:22] apptainer version 1.3.2-1.el7
[2025-07-28 21:04:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 21:04:23] c-205-13.aglt2.org
[2025-07-28 21:04:23] apptainer works
[2025-07-28 21:04:23] Set ATHENA_PROC_NUMBER=12
[2025-07-28 21:04:23] Set ATHENA_CORE_NUMBER=12
[2025-07-28 21:04:23] Starting ATLAS job with PandaID=6749246757
[2025-07-28 21:04:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 22:26:47]  *** The last 200 lines of the pilot log: ***
[2025-07-28 22:26:47]  mtime=0
[2025-07-28 22:26:47]  protocol_id=None
[2025-07-28 22:26:47]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 22:26:47]  replicas=None
[2025-07-28 22:26:47]  scope=mc23_13p6TeV
[2025-07-28 22:26:47]  status=None
[2025-07-28 22:26:47]  status_code=0
[2025-07-28 22:26:47]  storage_token=
[2025-07-28 22:26:47]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6749246757/log.45743349._056559.job.log.tgz.1
[2025-07-28 22:26:47]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/85/log.45743349._056559.job.log.tgz.1
[2025-07-28 22:26:47]  workdir=None
[2025-07-28 22:26:47] ]
[2025-07-28 22:26:47] 2025-07-29 02:26:08,585 | INFO     | transferring file log.45743349._056559.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6749246757/log.45743349._056559.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 22:26:47] 2025-07-29 02:26:08,585 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6749246757/log.45743349._056559.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056559.job
[2025-07-28 22:26:47] 2025-07-29 02:26:08,608 | INFO     | adding to output.list: log.45743349._056559.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/85/log.45743349._056559.job.log.tg
[2025-07-28 22:26:47] 2025-07-29 02:26:08,609 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 22:26:47] 2025-07-29 02:26:08,609 | INFO     | summary of transferred files:
[2025-07-28 22:26:47] 2025-07-29 02:26:08,609 | INFO     |  -- lfn=log.45743349._056559.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 22:26:47] 2025-07-29 02:26:08,610 | INFO     | stage-out finished correctly
[2025-07-28 22:26:47] 2025-07-29 02:26:08,838 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 22:26:47] 2025-07-29 02:26:08,990 | INFO     | monitor loop #366: job 0:6749246757 is in state 'finished'
[2025-07-28 22:26:47] 2025-07-29 02:26:08,991 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:26:47] 2025-07-29 02:26:09,367 | INFO     | job 6749246757 has state=finished
[2025-07-28 22:26:47] 2025-07-29 02:26:09,367 | INFO     | preparing for final server update for job 6749246757 in state='finished'
[2025-07-28 22:26:47] 2025-07-29 02:26:09,368 | INFO     | this job has now completed (state=finished)
[2025-07-28 22:26:47] 2025-07-29 02:26:09,368 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 22:26:47] 2025-07-29 02:26:09,368 | INFO     | log transfer has been attempted: DONE
[2025-07-28 22:26:47] 2025-07-29 02:26:09,368 | INFO     | job 6749246757 has finished - writing final server update
[2025-07-28 22:26:47] 2025-07-29 02:26:09,369 | INFO     | total number of processed events: 400 (read)
[2025-07-28 22:26:47] 2025-07-29 02:26:09,370 | INFO     | executing command: lscpu
[2025-07-28 22:26:47] 2025-07-29 02:26:09,394 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 22:26:47] 2025-07-29 02:26:11,499 | INFO     | monitor loop #367: job 0:6749246757 is in state 'finished'
[2025-07-28 22:26:47] 2025-07-29 02:26:11,499 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,002 | INFO     | monitor loop #368: job 0:6749246757 is in state 'finished'
[2025-07-28 22:26:47] 2025-07-29 02:26:14,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,392 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 22:26:47] 2025-07-29 02:26:14,396 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-28 22:26:47] 2025-07-29 02:26:14,399 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749246757/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,400 | INFO     | extracted standard info from prmon json
[2025-07-28 22:26:47] 2025-07-29 02:26:14,400 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 22:26:47] 2025-07-29 02:26:14,400 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 22:26:47] 2025-07-29 02:26:14,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 22:26:47] 2025-07-29 02:26:14,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 22:26:47] 2025-07-29 02:26:14,402 | INFO     | fitting pss+swap vs Time
[2025-07-28 22:26:47] 2025-07-29 02:26:14,402 | INFO     | sum of square deviations: 120605052.0
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | sum of deviations: -2866638453.0000005
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | mean x: 1753753610.0
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | mean y: 2707625.890410959
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | -- intersect: 41687342325.219315
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | intersect: 41687342325.219315
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | chi2: 0.08271537919492998
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | -- intersect: 41687342325.219315
[2025-07-28 22:26:47] 2025-07-29 02:26:14,403 | INFO     | current memory leak: -23.77 B/s (using 73 data points, chi2=0.08)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,404 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,404 | INFO     | ..............................
[2025-07-28 22:26:47] 2025-07-29 02:26:14,404 | INFO     | . Timing measurements:
[2025-07-28 22:26:47] 2025-07-29 02:26:14,404 | INFO     | . get job = 0 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,404 | INFO     | . initial setup = 2 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,404 | INFO     | . payload setup = 9 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,404 | INFO     | . stage-in = 0 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,405 | INFO     | . payload execution = 4860 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,405 | INFO     | . stage-out = 0 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,405 | INFO     | . log creation = 0 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,405 | INFO     | ..............................
[2025-07-28 22:26:47] 2025-07-29 02:26:14,487 | INFO     | 
[2025-07-28 22:26:47] 2025-07-29 02:26:14,487 | INFO     | job summary report
[2025-07-28 22:26:47] 2025-07-29 02:26:14,488 | INFO     | --------------------------------------------------
[2025-07-28 22:26:47] 2025-07-29 02:26:14,488 | INFO     | PanDA job id: 6749246757
[2025-07-28 22:26:47] 2025-07-29 02:26:14,488 | INFO     | task id: 45743349
[2025-07-28 22:26:47] 2025-07-29 02:26:14,488 | INFO     | errors: (none)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,488 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | pilot state: finished 
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | transexitcode: 0
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | exeerrorcode: 0
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | exeerrordiag: 
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | exitcode: 0
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | exitmsg: OK
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | cpuconsumptiontime: 52227 s
[2025-07-28 22:26:47] 2025-07-29 02:26:14,489 | INFO     | nevents: 400
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | neventsw: 0
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | pid: 3558
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | pgrp: 3558
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | corecount: 12
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | event service: False
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | sizes: {0: 2391737, 1: 2391936, 5: 2392198, 11: 2392254, 4874: 2418471, 4875: 2427653, 4881: 2427791}
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | --------------------------------------------------
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | 
[2025-07-28 22:26:47] 2025-07-29 02:26:14,490 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 22:26:47] 2025-07-29 02:26:14,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,517 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,518 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 22:26:47] 2025-07-29 02:26:14,518 | INFO     | job 6749246757 has completed (purged errors)
[2025-07-28 22:26:47] 2025-07-29 02:26:14,518 | INFO     | overall cleanup function is called
[2025-07-28 22:26:47] 2025-07-29 02:26:15,525 | INFO     | --- collectZombieJob: --- 10, [3558]
[2025-07-28 22:26:47] 2025-07-29 02:26:15,525 | INFO     | zombie collector waiting for pid 3558
[2025-07-28 22:26:47] 2025-07-29 02:26:15,525 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 22:26:47] 2025-07-29 02:26:15,525 | INFO     | collected zombie processes
[2025-07-28 22:26:47] 2025-07-29 02:26:15,525 | INFO     | will attempt to kill all subprocesses of pid=3558
[2025-07-28 22:26:47] 2025-07-29 02:26:15,614 | INFO     | process IDs to be killed: [3558] (in reverse order)
[2025-07-28 22:26:47] 2025-07-29 02:26:15,666 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 22:26:47] 2025-07-29 02:26:15,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 22:26:47] 2025-07-29 02:26:15,670 | INFO     | did not find any defunct processes belonging to 3558
[2025-07-28 22:26:47] 2025-07-29 02:26:15,673 | INFO     | did not find any defunct processes belonging to 3558
[2025-07-28 22:26:47] 2025-07-29 02:26:15,673 | INFO     | ready for new job
[2025-07-28 22:26:47] 2025-07-29 02:26:15,673 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 22:26:47] 2025-07-29 02:26:15,674 | INFO     | ***************************************
[2025-07-28 22:26:47] 2025-07-29 02:26:15,674 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 22:26:47] 2025-07-29 02:26:15,674 | INFO     | ***************************************
[2025-07-28 22:26:47] 2025-07-29 02:26:15,675 | INFO     | 
[2025-07-28 22:26:47] 2025-07-29 02:26:15,675 | INFO     | architecture information:
[2025-07-28 22:26:47] 2025-07-29 02:26:15,676 | INFO     | executing command: cat /etc/os-release
[2025-07-28 22:26:47] 2025-07-29 02:26:15,691 | INFO     | cat /etc/os-release:
[2025-07-28 22:26:47] NAME="CentOS Linux"
[2025-07-28 22:26:47] VERSION="7 (Core)"
[2025-07-28 22:26:47] ID="centos"
[2025-07-28 22:26:47] ID_LIKE="rhel fedora"
[2025-07-28 22:26:47] VERSION_ID="7"
[2025-07-28 22:26:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 22:26:47] ANSI_COLOR="0;31"
[2025-07-28 22:26:47] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 22:26:47] HOME_URL="https://www.centos.org/"
[2025-07-28 22:26:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 22:26:47] 
[2025-07-28 22:26:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 22:26:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 22:26:47] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 22:26:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 22:26:47] 
[2025-07-28 22:26:47] 2025-07-29 02:26:15,692 | INFO     | ***************************************
[2025-07-28 22:26:47] 2025-07-29 02:26:16,195 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 22:26:47] 2025-07-29 02:26:16,212 | INFO     | sufficient remaining disk space (29346496512 B)
[2025-07-28 22:26:47] 2025-07-29 02:26:16,212 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 22:26:47] 2025-07-29 02:26:16,213 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 22:26:47] 2025-07-29 02:26:16,213 | INFO     | update_server=False
[2025-07-28 22:26:47] 2025-07-29 02:26:16,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 22:26:47] 2025-07-29 02:26:16,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:26:47] 2025-07-29 02:26:16,321 | INFO     | all job control threads have been joined
[2025-07-28 22:26:47] 2025-07-29 02:26:16,512 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 22:26:47] 2025-07-29 02:26:16,512 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 22:26:47] 2025-07-29 02:26:16,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:26:47] 2025-07-29 02:26:16,513 | INFO     | will abort loop
[2025-07-28 22:26:47] 2025-07-29 02:26:16,704 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 22:26:47] 2025-07-29 02:26:16,712 | INFO     | all data control threads have been joined
[2025-07-28 22:26:47] 2025-07-29 02:26:16,972 | INFO     | all payload control threads have been joined
[2025-07-28 22:26:47] 2025-07-29 02:26:17,219 | INFO     | [job] retrieve thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,219 | INFO     | [job] queue monitor thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,318 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,326 | INFO     | [job] control thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,518 | INFO     | [job] job monitor thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,561 | INFO     | [payload] failed_post thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,717 | INFO     | [data] control thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,762 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,778 | INFO     | [data] copytool_in thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:17,977 | INFO     | [payload] control thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:18,437 | INFO     | [job] validate thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:18,446 | INFO     | [payload] validate_post thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:18,703 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:18,709 | INFO     | [data] copytool_out thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:19,432 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 22:26:47] 2025-07-29 02:26:23,438 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:26,728 | INFO     | job.realtimelogging is not enabled
[2025-07-28 22:26:47] 2025-07-29 02:26:27,734 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 22:26:47] 2025-07-29 02:26:28,549 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139830540797760)>', '<ExcThread(monitor, started 139829958399744)>']
[2025-07-28 22:26:47] 2025-07-29 02:26:33,574 | INFO     | all workflow threads have been joined
[2025-07-28 22:26:47] 2025-07-29 02:26:33,574 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 22:26:47] 2025-07-29 02:26:33,575 | INFO     | traces error code: 0
[2025-07-28 22:26:47] 2025-07-29 02:26:33,575 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 22:26:47] 2025-07-29 02:26:46,955 | INFO     | PID=29061 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 22:26:47] 2025-07-29 02:26:46,956 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 22:26:47] 2025-07-29 02:26:46,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 22:26:47] 2025-07-29 02:26:46,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 22:26:47] 2025-07-29 02:26:46,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 22:26:47] 2025-07-29 02:26:46,956 | INFO     | [monitor] control thread has ended
[2025-07-28 22:26:47] 2025-07-29 02:26:47,044 [wrapper] ==== pilot stdout END ====
[2025-07-28 22:26:47] 2025-07-29 02:26:47,048 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 22:26:47] 2025-07-29 02:26:47,052 [wrapper] pilotpid: 29061
[2025-07-28 22:26:47] 2025-07-29 02:26:47,056 [wrapper] Pilot exit status: 0
[2025-07-28 22:26:47] 2025-07-29 02:26:47,072 [wrapper] pandaids: 6749246757
[2025-07-28 22:26:47] 2025-07-29 02:26:47,114 [wrapper] cleanup supervisor_pilot 26282 29062
[2025-07-28 22:26:47] 2025-07-29 02:26:47,117 [wrapper] Test setup, not cleaning
[2025-07-28 22:26:47] 2025-07-29 02:26:47,121 [wrapper] apfmon messages muted
[2025-07-28 22:26:47] 2025-07-29 02:26:47,125 [wrapper] ==== wrapper stdout END ====
[2025-07-28 22:26:47] 2025-07-29 02:26:47,129 [wrapper] ==== wrapper stderr END ====
[2025-07-28 22:26:47]  *** Error codes and diagnostics ***
[2025-07-28 22:26:47]     "exeErrorCode": 0,
[2025-07-28 22:26:47]     "exeErrorDiag": "",
[2025-07-28 22:26:47]     "pilotErrorCode": 0,
[2025-07-28 22:26:47]     "pilotErrorDiag": "",
[2025-07-28 22:26:47]  *** Listing of results directory ***
[2025-07-28 22:26:47] total 433388
[2025-07-28 22:26:47] -rwx------ 1 boincer umatlas     36292 Jul 28 21:03 runpilot2-wrapper.sh
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 21:03 queuedata.json
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 21:03 pilot3.tar.gz
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas       100 Jul 28 21:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 22:26:47] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 21:04 run_atlas
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas       105 Jul 28 21:04 job.xml
[2025-07-28 22:26:47] -rw-r--r-- 2 boincer umatlas 229030732 Jul 28 21:04 EVNT.45743347._001415.pool.root.1
[2025-07-28 22:26:47] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 21:04 start_atlas.sh
[2025-07-28 22:26:47] drwxrwx--x 2 boincer umatlas      4096 Jul 28 21:04 shared
[2025-07-28 22:26:47] -rw-r--r-- 2 boincer umatlas    542890 Jul 28 21:04 input.tar.gz
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas         0 Jul 28 21:04 boinc_lockfile
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas      2562 Jul 28 21:04 pandaJob.out
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas    977340 Jul 28 21:04 agis_schedconf.cvmfs.json
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas   1589827 Jul 28 21:04 agis_ddmendpoints.agis.ALL.json
[2025-07-28 22:26:47] drwx------ 4 boincer umatlas      4096 Jul 28 21:04 pilot3
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas      5868 Jul 28 22:18 init_data.xml
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas 209208726 Jul 28 22:25 HITS.45743349._056559.pool.root.1
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas       529 Jul 28 22:25 boinc_task_state.xml
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas      1043 Jul 28 22:26 memory_monitor_summary.json
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas    376574 Jul 28 22:26 log.45743349._056559.job.log.tgz.1
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas      7843 Jul 28 22:26 heartbeat.json
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas        27 Jul 28 22:26 wrapper_checkpoint.txt
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 22:26 boinc_mmap_file
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas        95 Jul 28 22:26 pilot_heartbeat.json
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas       745 Jul 28 22:26 pilotlog.txt
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas    465783 Jul 28 22:26 log.45743349._056559.job.log.1
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas       357 Jul 28 22:26 output.list
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas       620 Jul 28 22:26 runtime_log
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas    860160 Jul 28 22:26 result.tar.gz
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas       660 Jul 28 22:26 Th4LDmDwn07n9Rq4apOajLDm4fhM0noT9bVof3QYDmDH3KDmp7Vmum.diag
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 22:26 runtime_log.err
[2025-07-28 22:26:47] -rw-r--r-- 1 boincer umatlas     21687 Jul 28 22:26 stderr.txt
[2025-07-28 22:26:47] HITS file was successfully produced:
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas 209208726 Jul 28 22:25 shared/HITS.pool.root.1
[2025-07-28 22:26:47]  *** Contents of shared directory: ***
[2025-07-28 22:26:47] total 429364
[2025-07-28 22:26:47] -rw-r--r-- 2 boincer umatlas 229030732 Jul 28 21:04 ATLAS.root_0
[2025-07-28 22:26:47] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 21:04 start_atlas.sh
[2025-07-28 22:26:47] -rw-r--r-- 2 boincer umatlas    542890 Jul 28 21:04 input.tar.gz
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas 209208726 Jul 28 22:25 HITS.pool.root.1
[2025-07-28 22:26:47] -rw------- 1 boincer umatlas    860160 Jul 28 22:26 result.tar.gz
22:26:48 (25364): run_atlas exited; CPU time 52198.272963
22:26:48 (25364): called boinc_finish(0)

</stderr_txt>
]]>

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