Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:01:37 (3441052): wrapper (7.7.26015): starting
21:01:37 (3441052): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 21:01:37] Arguments: --nthreads 8
[2025-07-28 21:01:37] Threads: 8
[2025-07-28 21:01:37] Checking for CVMFS
[2025-07-28 21:01:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 21:01:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 21:01:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 21:01:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 21:01:38] 2.13.1.0 675479 16352 192120 148870 0 259 21593184 40960000 17156 16776704 0 42282691 99.862 30971499 48712 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 21:01:38] CVMFS is ok
[2025-07-28 21:01:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 21:01:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 21:01:38] Further information can be found at the LHC@home message board.
[2025-07-28 21:01:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 21:01:38] Checking for apptainer binary...
[2025-07-28 21:01:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 21:01:38] Running /usr/bin/apptainer --version
[2025-07-28 21:01:38] apptainer version 1.4.1-1.el9
[2025-07-28 21:01:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 21:01:38] c-212-11.aglt2.org
[2025-07-28 21:01:38] apptainer works
[2025-07-28 21:01:38] Set ATHENA_PROC_NUMBER=8
[2025-07-28 21:01:38] Set ATHENA_CORE_NUMBER=8
[2025-07-28 21:01:38] Starting ATLAS job with PandaID=6745388642
[2025-07-28 21:01:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 22:40:36]  *** The last 200 lines of the pilot log: ***
[2025-07-28 22:40:36]  status_code=0
[2025-07-28 22:40:36]  storage_token=
[2025-07-28 22:40:36]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745388642/log.45743349._043691.job.log.tgz.1
[2025-07-28 22:40:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/1a/log.45743349._043691.job.log.tgz.1
[2025-07-28 22:40:36]  workdir=None
[2025-07-28 22:40:36] ]
[2025-07-28 22:40:36] 2025-07-29 02:39:53,056 | INFO     | transferring file log.45743349._043691.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745388642/log.45743349._043691.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 22:40:36] 2025-07-29 02:39:53,057 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745388642/log.45743349._043691.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._043691.job
[2025-07-28 22:40:36] 2025-07-29 02:39:53,075 | INFO     | adding to output.list: log.45743349._043691.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/aa/1a/log.45743349._043691.job.log.tg
[2025-07-28 22:40:36] 2025-07-29 02:39:53,076 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 22:40:36] 2025-07-29 02:39:53,076 | INFO     | summary of transferred files:
[2025-07-28 22:40:36] 2025-07-29 02:39:53,076 | INFO     |  -- lfn=log.45743349._043691.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 22:40:36] 2025-07-29 02:39:53,076 | INFO     | stage-out finished correctly
[2025-07-28 22:40:36] 2025-07-29 02:39:53,256 | WARNING  | process 3451059 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 22:40:36] 2025-07-29 02:39:53,257 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745388642/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 22:40:36] 2025-07-29 02:39:53,683 | INFO     | number of running child processes to parent process 3451059: 1
[2025-07-28 22:40:36] 2025-07-29 02:39:53,684 | INFO     | maximum number of monitored processes: 6
[2025-07-28 22:40:36] 2025-07-29 02:39:56,188 | INFO     | monitor loop #421: job 0:6745388642 is in state 'finished'
[2025-07-28 22:40:36] 2025-07-29 02:39:56,188 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:40:36] 2025-07-29 02:39:56,551 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 22:40:36] 2025-07-29 02:39:58,693 | INFO     | monitor loop #422: job 0:6745388642 is in state 'finished'
[2025-07-28 22:40:36] 2025-07-29 02:39:58,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:40:36] 2025-07-29 02:39:59,507 | INFO     | job 6745388642 has state=finished
[2025-07-28 22:40:36] 2025-07-29 02:39:59,507 | INFO     | preparing for final server update for job 6745388642 in state='finished'
[2025-07-28 22:40:36] 2025-07-29 02:39:59,510 | INFO     | this job has now completed (state=finished)
[2025-07-28 22:40:36] 2025-07-29 02:39:59,510 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 22:40:36] 2025-07-29 02:39:59,510 | INFO     | log transfer has been attempted: DONE
[2025-07-28 22:40:36] 2025-07-29 02:39:59,511 | INFO     | job 6745388642 has finished - writing final server update
[2025-07-28 22:40:36] 2025-07-29 02:39:59,512 | INFO     | total number of processed events: 400 (read)
[2025-07-28 22:40:36] 2025-07-29 02:39:59,514 | INFO     | executing command: lscpu
[2025-07-28 22:40:36] 2025-07-29 02:39:59,580 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 22:40:36] 2025-07-29 02:40:01,198 | INFO     | monitor loop #423: job 0:6745388642 is in state 'finished'
[2025-07-28 22:40:36] 2025-07-29 02:40:01,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:40:36] 2025-07-29 02:40:03,706 | INFO     | monitor loop #424: job 0:6745388642 is in state 'finished'
[2025-07-28 22:40:36] 2025-07-29 02:40:03,706 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:40:36] 2025-07-29 02:40:03,990 | INFO     | PID=3444639 has CPU usage=9.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 22:40:36] 2025-07-29 02:40:03,990 | INFO     | .. there are 14 such processes running
[2025-07-28 22:40:36] 2025-07-29 02:40:04,353 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 22:40:36] 2025-07-29 02:40:04,359 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2939.4862187500003
[2025-07-28 22:40:36] 2025-07-29 02:40:04,376 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745388642/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 22:40:36] 2025-07-29 02:40:04,377 | INFO     | extracted standard info from prmon json
[2025-07-28 22:40:36] 2025-07-29 02:40:04,377 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 22:40:36] 2025-07-29 02:40:04,377 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 22:40:36] 2025-07-29 02:40:04,377 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 22:40:36] 2025-07-29 02:40:04,377 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 22:40:36] 2025-07-29 02:40:04,380 | INFO     | fitting pss+swap vs Time
[2025-07-28 22:40:36] 2025-07-29 02:40:04,380 | INFO     | sum of square deviations: 218570320.98876375
[2025-07-28 22:40:36] 2025-07-29 02:40:04,380 | INFO     | sum of deviations: -13667849646.38202
[2025-07-28 22:40:36] 2025-07-29 02:40:04,380 | INFO     | mean x: 1753753923.011236
[2025-07-28 22:40:36] 2025-07-29 02:40:04,381 | INFO     | mean y: 2620351.382022472
[2025-07-28 22:40:36] 2025-07-29 02:40:04,381 | INFO     | -- intersect: 109670048335.36002
[2025-07-28 22:40:36] 2025-07-29 02:40:04,381 | INFO     | intersect: 109670048335.36002
[2025-07-28 22:40:36] 2025-07-29 02:40:04,381 | INFO     | chi2: 0.14195904266316578
[2025-07-28 22:40:36] 2025-07-29 02:40:04,381 | INFO     | -- intersect: 109670048335.36002
[2025-07-28 22:40:36] 2025-07-29 02:40:04,381 | INFO     | current memory leak: -62.53 B/s (using 89 data points, chi2=0.14)
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | could have reported an average CPU frequency of 3043 MHz (7 samples)
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | ..............................
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . Timing measurements:
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . get job = 0 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . initial setup = 2 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . payload setup = 6 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . stage-in = 0 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . payload execution = 5857 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . stage-out = 0 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | . log creation = 0 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,382 | INFO     | ..............................
[2025-07-28 22:40:36] 2025-07-29 02:40:04,844 | INFO     | 
[2025-07-28 22:40:36] 2025-07-29 02:40:04,844 | INFO     | job summary report
[2025-07-28 22:40:36] 2025-07-29 02:40:04,844 | INFO     | --------------------------------------------------
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | PanDA job id: 6745388642
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | task id: 45743349
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | errors: (none)
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | pilot state: finished 
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | transexitcode: 0
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | exeerrorcode: 0
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | exeerrordiag: 
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | exitcode: 0
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | exitmsg: OK
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | cpuconsumptiontime: 35489 s
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | nevents: 400
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | neventsw: 0
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | pid: 3451059
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | pgrp: 3451059
[2025-07-28 22:40:36] 2025-07-29 02:40:04,845 | INFO     | corecount: 8
[2025-07-28 22:40:36] 2025-07-29 02:40:04,846 | INFO     | event service: False
[2025-07-28 22:40:36] 2025-07-29 02:40:04,846 | INFO     | sizes: {0: 2391909, 5: 2392171, 11: 2392227, 5868: 2418996, 5870: 2427994, 5874: 2428050, 5881: 2428372}
[2025-07-28 22:40:36] 2025-07-29 02:40:04,846 | INFO     | --------------------------------------------------
[2025-07-28 22:40:36] 2025-07-29 02:40:04,846 | INFO     | 
[2025-07-28 22:40:36] 2025-07-29 02:40:04,846 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 22:40:36] 2025-07-29 02:40:04,866 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,866 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,866 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,866 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,866 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,867 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 22:40:36] 2025-07-29 02:40:04,868 | INFO     | job 6745388642 has completed (purged errors)
[2025-07-28 22:40:36] 2025-07-29 02:40:04,868 | INFO     | overall cleanup function is called
[2025-07-28 22:40:36] 2025-07-29 02:40:05,876 | INFO     | --- collectZombieJob: --- 10, [3451059]
[2025-07-28 22:40:36] 2025-07-29 02:40:05,876 | INFO     | zombie collector waiting for pid 3451059
[2025-07-28 22:40:36] 2025-07-29 02:40:05,876 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 22:40:36] 2025-07-29 02:40:05,876 | INFO     | collected zombie processes
[2025-07-28 22:40:36] 2025-07-29 02:40:05,877 | INFO     | will attempt to kill all subprocesses of pid=3451059
[2025-07-28 22:40:36] 2025-07-29 02:40:06,215 | INFO     | process IDs to be killed: [3451059] (in reverse order)
[2025-07-28 22:40:36] 2025-07-29 02:40:06,323 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 22:40:36] 2025-07-29 02:40:06,323 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 22:40:36] 2025-07-29 02:40:06,336 | INFO     | did not find any defunct processes belonging to 3451059
[2025-07-28 22:40:36] 2025-07-29 02:40:06,349 | INFO     | did not find any defunct processes belonging to 3451059
[2025-07-28 22:40:36] 2025-07-29 02:40:06,349 | INFO     | ready for new job
[2025-07-28 22:40:36] 2025-07-29 02:40:06,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 22:40:36] 2025-07-29 02:40:06,351 | INFO     | ***************************************
[2025-07-28 22:40:36] 2025-07-29 02:40:06,351 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 22:40:36] 2025-07-29 02:40:06,351 | INFO     | ***************************************
[2025-07-28 22:40:36] 2025-07-29 02:40:06,351 | INFO     | 
[2025-07-28 22:40:36] 2025-07-29 02:40:06,356 | INFO     | architecture information:
[2025-07-28 22:40:36] 2025-07-29 02:40:06,357 | INFO     | executing command: cat /etc/os-release
[2025-07-28 22:40:36] 2025-07-29 02:40:06,374 | INFO     | cat /etc/os-release:
[2025-07-28 22:40:36] NAME="CentOS Linux"
[2025-07-28 22:40:36] VERSION="7 (Core)"
[2025-07-28 22:40:36] ID="centos"
[2025-07-28 22:40:36] ID_LIKE="rhel fedora"
[2025-07-28 22:40:36] VERSION_ID="7"
[2025-07-28 22:40:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 22:40:36] ANSI_COLOR="0;31"
[2025-07-28 22:40:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 22:40:36] HOME_URL="https://www.centos.org/"
[2025-07-28 22:40:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 22:40:36] 
[2025-07-28 22:40:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 22:40:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 22:40:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 22:40:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 22:40:36] 
[2025-07-28 22:40:36] 2025-07-29 02:40:06,374 | INFO     | ***************************************
[2025-07-28 22:40:36] 2025-07-29 02:40:06,878 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 22:40:36] 2025-07-29 02:40:06,897 | INFO     | sufficient remaining disk space (129513816064 B)
[2025-07-28 22:40:36] 2025-07-29 02:40:06,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 22:40:36] 2025-07-29 02:40:06,897 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 22:40:36] 2025-07-29 02:40:06,897 | INFO     | update_server=False
[2025-07-28 22:40:36] 2025-07-29 02:40:06,898 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 22:40:36] 2025-07-29 02:40:06,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 22:40:36] 2025-07-29 02:40:07,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 22:40:36] 2025-07-29 02:40:07,215 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:40:36] 2025-07-29 02:40:07,215 | INFO     | aborting loop
[2025-07-28 22:40:36] 2025-07-29 02:40:07,667 | INFO     | all data control threads have been joined
[2025-07-28 22:40:36] 2025-07-29 02:40:07,687 | INFO     | all job control threads have been joined
[2025-07-28 22:40:36] 2025-07-29 02:40:07,861 | INFO     | all payload control threads have been joined
[2025-07-28 22:40:36] 2025-07-29 02:40:07,902 | INFO     | [job] retrieve thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,199 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,220 | INFO     | [job] job monitor thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,283 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,457 | INFO     | [payload] validate_post thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,673 | INFO     | [data] control thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,693 | INFO     | [job] control thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,719 | INFO     | [data] copytool_in thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,866 | INFO     | [payload] control thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,871 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,904 | INFO     | [data] copytool_out thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:08,989 | INFO     | [job] validate thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:09,007 | INFO     | [payload] failed_post thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:09,146 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:09,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:40:36] 2025-07-29 02:40:10,484 | INFO     | [job] queue monitor thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:11,171 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 22:40:36] 2025-07-29 02:40:12,547 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419890874176)>', '<ExcThread(monitor, started 140419115509504)>']
[2025-07-28 22:40:36] 2025-07-29 02:40:17,573 | INFO     | all workflow threads have been joined
[2025-07-28 22:40:36] 2025-07-29 02:40:17,573 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 22:40:36] 2025-07-29 02:40:17,574 | INFO     | traces error code: 0
[2025-07-28 22:40:36] 2025-07-29 02:40:17,574 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 22:40:36] 2025-07-29 02:40:36,489 | INFO     | PID=3444639 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 22:40:36] 2025-07-29 02:40:36,490 | INFO     | .. there are 14 such processes running
[2025-07-28 22:40:36] 2025-07-29 02:40:36,490 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 22:40:36] 2025-07-29 02:40:36,490 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 22:40:36] 2025-07-29 02:40:36,490 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 22:40:36] 2025-07-29 02:40:36,490 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 22:40:36] 2025-07-29 02:40:36,490 | INFO     | [monitor] control thread has ended
[2025-07-28 22:40:36] 2025-07-29 02:40:36,659 [wrapper] ==== pilot stdout END ====
[2025-07-28 22:40:36] 2025-07-29 02:40:36,663 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 22:40:36] 2025-07-29 02:40:36,667 [wrapper] pilotpid: 3444639
[2025-07-28 22:40:36] 2025-07-29 02:40:36,669 [wrapper] Pilot exit status: 0
[2025-07-28 22:40:36] 2025-07-29 02:40:36,697 [wrapper] pandaids: 6745388642
[2025-07-28 22:40:36] 2025-07-29 02:40:36,782 [wrapper] cleanup supervisor_pilot 3621209 3444640
[2025-07-28 22:40:36] 2025-07-29 02:40:36,786 [wrapper] Test setup, not cleaning
[2025-07-28 22:40:36] 2025-07-29 02:40:36,790 [wrapper] apfmon messages muted
[2025-07-28 22:40:36] 2025-07-29 02:40:36,795 [wrapper] ==== wrapper stdout END ====
[2025-07-28 22:40:36] 2025-07-29 02:40:36,800 [wrapper] ==== wrapper stderr END ====
[2025-07-28 22:40:36]  *** Error codes and diagnostics ***
[2025-07-28 22:40:36]     "exeErrorCode": 0,
[2025-07-28 22:40:36]     "exeErrorDiag": "",
[2025-07-28 22:40:36]     "pilotErrorCode": 0,
[2025-07-28 22:40:36]     "pilotErrorDiag": "",
[2025-07-28 22:40:36]  *** Listing of results directory ***
[2025-07-28 22:40:36] total 345156
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 16:08 pilot3.tar.gz
[2025-07-28 22:40:36] -rwx------. 1 boincer umatlas     36292 Jul 26 16:11 runpilot2-wrapper.sh
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 16:11 queuedata.json
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas       100 Jul 28 21:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 22:40:36] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 21:01 run_atlas
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas       105 Jul 28 21:01 job.xml
[2025-07-28 22:40:36] -rw-r--r--. 2 boincer umatlas 145264218 Jul 28 21:01 EVNT.45743347._002497.pool.root.1
[2025-07-28 22:40:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 21:01 start_atlas.sh
[2025-07-28 22:40:36] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 21:01 shared
[2025-07-28 22:40:36] -rw-r--r--. 2 boincer umatlas    542890 Jul 28 21:01 input.tar.gz
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas         0 Jul 28 21:01 boinc_lockfile
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas      2563 Jul 28 21:01 pandaJob.out
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas    977340 Jul 28 21:01 agis_schedconf.cvmfs.json
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas   1589827 Jul 28 21:01 agis_ddmendpoints.agis.ALL.json
[2025-07-28 22:40:36] drwx------. 4 boincer umatlas      4096 Jul 28 21:01 pilot3
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas 202562467 Jul 28 22:39 HITS.45743349._043691.pool.root.1
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas       529 Jul 28 22:39 boinc_task_state.xml
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas        95 Jul 28 22:39 pilot_heartbeat.json
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas      1040 Jul 28 22:39 memory_monitor_summary.json
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas    314024 Jul 28 22:39 log.45743349._043691.job.log.tgz.1
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas      7783 Jul 28 22:40 heartbeat.json
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas      6944 Jul 28 22:40 init_data.xml
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas        27 Jul 28 22:40 wrapper_checkpoint.txt
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas       823 Jul 28 22:40 pilotlog.txt
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 22:40 boinc_mmap_file
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas    560967 Jul 28 22:40 log.45743349._043691.job.log.1
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas       357 Jul 28 22:40 output.list
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas       620 Jul 28 22:40 runtime_log
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas    890880 Jul 28 22:40 result.tar.gz
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 22:40 runtime_log.err
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas       653 Jul 28 22:40 OmJKDmkP0z7n9Rq4apOajLDm4fhM0noT9bVof3QYDmmO1KDml39bWo.diag
[2025-07-28 22:40:36] -rw-r--r--. 1 boincer umatlas     22280 Jul 28 22:40 stderr.txt
[2025-07-28 22:40:36] HITS file was successfully produced:
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas 202562467 Jul 28 22:39 shared/HITS.pool.root.1
[2025-07-28 22:40:36]  *** Contents of shared directory: ***
[2025-07-28 22:40:36] total 341100
[2025-07-28 22:40:36] -rw-r--r--. 2 boincer umatlas 145264218 Jul 28 21:01 ATLAS.root_0
[2025-07-28 22:40:36] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 21:01 start_atlas.sh
[2025-07-28 22:40:36] -rw-r--r--. 2 boincer umatlas    542890 Jul 28 21:01 input.tar.gz
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas 202562467 Jul 28 22:39 HITS.pool.root.1
[2025-07-28 22:40:36] -rw-------. 1 boincer umatlas    890880 Jul 28 22:40 result.tar.gz
22:40:38 (3441052): run_atlas exited; CPU time 35567.120894
22:40:38 (3441052): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN