Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:56:08 (1351490): wrapper (7.7.26015): starting
20:56:08 (1351490): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 20:56:08] Arguments: --nthreads 12
[2025-07-28 20:56:08] Threads: 12
[2025-07-28 20:56:08] Checking for CVMFS
[2025-07-28 20:56:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 20:56:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 20:56:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 20:56:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 20:56:09] 2.12.6.0 999403 20552 291380 148870 1 437 22935410 32935937 10354 16776704 0 48678756 99.503 73780572 31146 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 20:56:09] CVMFS is ok
[2025-07-28 20:56:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 20:56:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 20:56:09] Further information can be found at the LHC@home message board.
[2025-07-28 20:56:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 20:56:09] Checking for apptainer binary...
[2025-07-28 20:56:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 20:56:09] Running /usr/bin/apptainer --version
[2025-07-28 20:56:09] apptainer version 1.4.1-1.el9
[2025-07-28 20:56:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 20:56:09] c6-2-29-4.aglt2.org
[2025-07-28 20:56:09] apptainer works
[2025-07-28 20:56:09] Set ATHENA_PROC_NUMBER=12
[2025-07-28 20:56:09] Set ATHENA_CORE_NUMBER=12
[2025-07-28 20:56:09] Starting ATLAS job with PandaID=6745230416
[2025-07-28 20:56:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 22:16:17]  *** The last 200 lines of the pilot log: ***
[2025-07-28 22:16:17]  is_tar=False
[2025-07-28 22:16:17]  lfn=log.45743349._040313.job.log.tgz.1
[2025-07-28 22:16:17]  mtime=0
[2025-07-28 22:16:17]  protocol_id=None
[2025-07-28 22:16:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 22:16:17]  replicas=None
[2025-07-28 22:16:17]  scope=mc23_13p6TeV
[2025-07-28 22:16:17]  status=None
[2025-07-28 22:16:17]  status_code=0
[2025-07-28 22:16:17]  storage_token=
[2025-07-28 22:16:17]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745230416/log.45743349._040313.job.log.tgz.1
[2025-07-28 22:16:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/7d/log.45743349._040313.job.log.tgz.1
[2025-07-28 22:16:17]  workdir=None
[2025-07-28 22:16:17] ]
[2025-07-28 22:16:17] 2025-07-29 02:15:34,832 | INFO     | transferring file log.45743349._040313.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745230416/log.45743349._040313.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 22:16:17] 2025-07-29 02:15:34,833 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745230416/log.45743349._040313.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._040313.job
[2025-07-28 22:16:17] 2025-07-29 02:15:34,853 | INFO     | adding to output.list: log.45743349._040313.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/7d/log.45743349._040313.job.log.tg
[2025-07-28 22:16:17] 2025-07-29 02:15:34,854 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 22:16:17] 2025-07-29 02:15:34,854 | INFO     | summary of transferred files:
[2025-07-28 22:16:17] 2025-07-29 02:15:34,854 | INFO     |  -- lfn=log.45743349._040313.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 22:16:17] 2025-07-29 02:15:34,855 | INFO     | stage-out finished correctly
[2025-07-28 22:16:17] 2025-07-29 02:15:37,892 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 22:16:17] 2025-07-29 02:15:37,983 | INFO     | job 6745230416 has state=finished
[2025-07-28 22:16:17] 2025-07-29 02:15:37,984 | INFO     | preparing for final server update for job 6745230416 in state='finished'
[2025-07-28 22:16:17] 2025-07-29 02:15:37,984 | INFO     | this job has now completed (state=finished)
[2025-07-28 22:16:17] 2025-07-29 02:15:37,984 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 22:16:17] 2025-07-29 02:15:37,984 | INFO     | log transfer has been attempted: DONE
[2025-07-28 22:16:17] 2025-07-29 02:15:37,985 | INFO     | job 6745230416 has finished - writing final server update
[2025-07-28 22:16:17] 2025-07-29 02:15:37,985 | INFO     | total number of processed events: 400 (read)
[2025-07-28 22:16:17] 2025-07-29 02:15:37,986 | INFO     | executing command: lscpu
[2025-07-28 22:16:17] 2025-07-29 02:15:38,049 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 22:16:17] 2025-07-29 02:15:39,593 | WARNING  | process 1363134 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 22:16:17] 2025-07-29 02:15:39,594 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745230416/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 22:16:17] 2025-07-29 02:15:39,873 | INFO     | number of running child processes to parent process 1363134: 1
[2025-07-28 22:16:17] 2025-07-29 02:15:39,873 | INFO     | maximum number of monitored processes: 6
[2025-07-28 22:16:17] 2025-07-29 02:15:42,376 | INFO     | monitor loop #344: job 0:6745230416 is in state 'finished'
[2025-07-28 22:16:17] 2025-07-29 02:15:42,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 22:16:17] 2025-07-29 02:15:43,742 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 22:16:17] 2025-07-29 02:15:43,750 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2818.260946428573
[2025-07-28 22:16:17] 2025-07-29 02:15:43,760 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745230416/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 22:16:17] 2025-07-29 02:15:43,760 | INFO     | extracted standard info from prmon json
[2025-07-28 22:16:17] 2025-07-29 02:15:43,761 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 22:16:17] 2025-07-29 02:15:43,761 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 22:16:17] 2025-07-29 02:15:43,761 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 22:16:17] 2025-07-29 02:15:43,761 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 22:16:17] 2025-07-29 02:15:43,763 | INFO     | fitting pss+swap vs Time
[2025-07-28 22:16:17] 2025-07-29 02:15:43,763 | INFO     | sum of square deviations: 110960220.0
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | sum of deviations: -6634216223.0
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | mean x: 1753753054.0
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | mean y: 2454466.0422535213
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | -- intersect: 104857842838.40303
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | intersect: 104857842838.40303
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | chi2: 0.27683938114050527
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | -- intersect: 104857842838.40303
[2025-07-28 22:16:17] 2025-07-29 02:15:43,764 | INFO     | current memory leak: -59.79 B/s (using 71 data points, chi2=0.28)
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | could have reported an average CPU frequency of 2830 MHz (6 samples)
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | ..............................
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | . Timing measurements:
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | . get job = 0 s
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | . initial setup = 3 s
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | . payload setup = 10 s
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | . stage-in = 0 s
[2025-07-28 22:16:17] 2025-07-29 02:15:43,765 | INFO     | . payload execution = 4721 s
[2025-07-28 22:16:17] 2025-07-29 02:15:43,766 | INFO     | . stage-out = 0 s
[2025-07-28 22:16:17] 2025-07-29 02:15:43,766 | INFO     | . log creation = 0 s
[2025-07-28 22:16:17] 2025-07-29 02:15:43,766 | INFO     | ..............................
[2025-07-28 22:16:17] 2025-07-29 02:15:44,276 | INFO     | 
[2025-07-28 22:16:17] 2025-07-29 02:15:44,276 | INFO     | job summary report
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | --------------------------------------------------
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | PanDA job id: 6745230416
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | task id: 45743349
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | errors: (none)
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | pilot state: finished 
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | transexitcode: 0
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | exeerrorcode: 0
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | exeerrordiag: 
[2025-07-28 22:16:17] 2025-07-29 02:15:44,277 | INFO     | exitcode: 0
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | exitmsg: OK
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | cpuconsumptiontime: 43816 s
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | nevents: 400
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | neventsw: 0
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | pid: 1363134
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | pgrp: 1363134
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | corecount: 12
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | event service: False
[2025-07-28 22:16:17] 2025-07-29 02:15:44,278 | INFO     | sizes: {0: 2391687, 1: 2391886, 6: 2392148, 11: 2392176, 4736: 2418362, 4737: 2427360, 4740: 2427544, 4746: 2427738}
[2025-07-28 22:16:17] 2025-07-29 02:15:44,279 | INFO     | --------------------------------------------------
[2025-07-28 22:16:17] 2025-07-29 02:15:44,279 | INFO     | 
[2025-07-28 22:16:17] 2025-07-29 02:15:44,279 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 22:16:17] 2025-07-29 02:15:44,303 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,303 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,303 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,303 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,303 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,304 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 22:16:17] 2025-07-29 02:15:44,305 | INFO     | job 6745230416 has completed (purged errors)
[2025-07-28 22:16:17] 2025-07-29 02:15:44,305 | INFO     | overall cleanup function is called
[2025-07-28 22:16:17] 2025-07-29 02:15:45,313 | INFO     | --- collectZombieJob: --- 10, [1363134]
[2025-07-28 22:16:17] 2025-07-29 02:15:45,313 | INFO     | zombie collector waiting for pid 1363134
[2025-07-28 22:16:17] 2025-07-29 02:15:45,313 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 22:16:17] 2025-07-29 02:15:45,314 | INFO     | collected zombie processes
[2025-07-28 22:16:17] 2025-07-29 02:15:45,314 | INFO     | will attempt to kill all subprocesses of pid=1363134
[2025-07-28 22:16:17] 2025-07-29 02:15:45,601 | INFO     | process IDs to be killed: [1363134] (in reverse order)
[2025-07-28 22:16:17] 2025-07-29 02:15:45,703 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 22:16:17] 2025-07-29 02:15:45,704 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 22:16:17] 2025-07-29 02:15:45,715 | INFO     | did not find any defunct processes belonging to 1363134
[2025-07-28 22:16:17] 2025-07-29 02:15:45,725 | INFO     | did not find any defunct processes belonging to 1363134
[2025-07-28 22:16:17] 2025-07-29 02:15:45,726 | INFO     | ready for new job
[2025-07-28 22:16:17] 2025-07-29 02:15:45,726 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 22:16:17] 2025-07-29 02:15:45,728 | INFO     | ***************************************
[2025-07-28 22:16:17] 2025-07-29 02:15:45,728 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 22:16:17] 2025-07-29 02:15:45,728 | INFO     | ***************************************
[2025-07-28 22:16:17] 2025-07-29 02:15:45,728 | INFO     | 
[2025-07-28 22:16:17] 2025-07-29 02:15:45,744 | INFO     | architecture information:
[2025-07-28 22:16:17] 2025-07-29 02:15:45,745 | INFO     | executing command: cat /etc/os-release
[2025-07-28 22:16:17] 2025-07-29 02:15:45,763 | INFO     | cat /etc/os-release:
[2025-07-28 22:16:17] NAME="CentOS Linux"
[2025-07-28 22:16:17] VERSION="7 (Core)"
[2025-07-28 22:16:17] ID="centos"
[2025-07-28 22:16:17] ID_LIKE="rhel fedora"
[2025-07-28 22:16:17] VERSION_ID="7"
[2025-07-28 22:16:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 22:16:17] ANSI_COLOR="0;31"
[2025-07-28 22:16:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 22:16:17] HOME_URL="https://www.centos.org/"
[2025-07-28 22:16:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 22:16:17] 
[2025-07-28 22:16:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 22:16:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 22:16:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 22:16:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 22:16:17] 
[2025-07-28 22:16:17] 2025-07-29 02:15:45,763 | INFO     | ***************************************
[2025-07-28 22:16:17] 2025-07-29 02:15:46,266 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 22:16:17] 2025-07-29 02:15:46,285 | INFO     | sufficient remaining disk space (76690751488 B)
[2025-07-28 22:16:17] 2025-07-29 02:15:46,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 22:16:17] 2025-07-29 02:15:46,286 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 22:16:17] 2025-07-29 02:15:46,286 | INFO     | update_server=False
[2025-07-28 22:16:17] 2025-07-29 02:15:46,286 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 22:16:17] 2025-07-29 02:15:46,286 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 22:16:17] 2025-07-29 02:15:46,287 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:16:17] 2025-07-29 02:15:46,287 | INFO     | aborting loop
[2025-07-28 22:16:17] 2025-07-29 02:15:46,859 | INFO     | all job control threads have been joined
[2025-07-28 22:16:17] 2025-07-29 02:15:46,927 | INFO     | all data control threads have been joined
[2025-07-28 22:16:17] 2025-07-29 02:15:47,292 | INFO     | [job] retrieve thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,292 | INFO     | [job] job monitor thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,449 | INFO     | [payload] failed_post thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,469 | INFO     | [job] validate thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,536 | INFO     | all payload control threads have been joined
[2025-07-28 22:16:17] 2025-07-29 02:15:47,585 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,802 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,850 | INFO     | [payload] validate_post thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,864 | INFO     | [job] control thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:47,932 | INFO     | [data] control thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:48,292 | INFO     | [data] copytool_out thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:48,339 | INFO     | [data] copytool_in thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:48,457 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:48,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 22:16:17] 2025-07-29 02:15:48,542 | INFO     | [payload] control thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:48,563 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:48,875 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 22:16:17] 2025-07-29 02:15:49,881 | INFO     | [job] queue monitor thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:52,504 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 22:16:17] 2025-07-29 02:15:53,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908831135552)>', '<ExcThread(monitor, started 139908324767488)>']
[2025-07-28 22:16:17] 2025-07-29 02:15:58,316 | INFO     | all workflow threads have been joined
[2025-07-28 22:16:17] 2025-07-29 02:15:58,316 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 22:16:17] 2025-07-29 02:15:58,317 | INFO     | traces error code: 0
[2025-07-28 22:16:17] 2025-07-29 02:15:58,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 22:16:17] 2025-07-29 02:16:17,182 | INFO     | PID=1355968 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 22:16:17] 2025-07-29 02:16:17,183 | INFO     | .. there are 10 such processes running
[2025-07-28 22:16:17] 2025-07-29 02:16:17,183 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 22:16:17] 2025-07-29 02:16:17,183 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 22:16:17] 2025-07-29 02:16:17,183 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 22:16:17] 2025-07-29 02:16:17,183 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 22:16:17] 2025-07-29 02:16:17,183 | INFO     | [monitor] control thread has ended
[2025-07-28 22:16:17] 2025-07-29 02:16:17,377 [wrapper] ==== pilot stdout END ====
[2025-07-28 22:16:17] 2025-07-29 02:16:17,381 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 22:16:17] 2025-07-29 02:16:17,386 [wrapper] pilotpid: 1355968
[2025-07-28 22:16:17] 2025-07-29 02:16:17,389 [wrapper] Pilot exit status: 0
[2025-07-28 22:16:17] 2025-07-29 02:16:17,407 [wrapper] pandaids: 6745230416
[2025-07-28 22:16:17] 2025-07-29 02:16:17,480 [wrapper] cleanup supervisor_pilot 1650646 1355969
[2025-07-28 22:16:17] 2025-07-29 02:16:17,486 [wrapper] Test setup, not cleaning
[2025-07-28 22:16:17] 2025-07-29 02:16:17,490 [wrapper] apfmon messages muted
[2025-07-28 22:16:17] 2025-07-29 02:16:17,495 [wrapper] ==== wrapper stdout END ====
[2025-07-28 22:16:17] 2025-07-29 02:16:17,500 [wrapper] ==== wrapper stderr END ====
[2025-07-28 22:16:17]  *** Error codes and diagnostics ***
[2025-07-28 22:16:17]     "exeErrorCode": 0,
[2025-07-28 22:16:17]     "exeErrorDiag": "",
[2025-07-28 22:16:17]     "pilotErrorCode": 0,
[2025-07-28 22:16:17]     "pilotErrorDiag": "",
[2025-07-28 22:16:17]  *** Listing of results directory ***
[2025-07-28 22:16:17] total 349112
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 11:29 pilot3.tar.gz
[2025-07-28 22:16:17] -rwx------. 1 boincer umatlas     36292 Jul 26 11:39 runpilot2-wrapper.sh
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 11:39 queuedata.json
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas       100 Jul 28 20:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 22:16:17] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 20:56 run_atlas
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas       105 Jul 28 20:56 job.xml
[2025-07-28 22:16:17] -rw-r--r--. 2 boincer umatlas 144588252 Jul 28 20:56 EVNT.45743347._002301.pool.root.1
[2025-07-28 22:16:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 20:56 start_atlas.sh
[2025-07-28 22:16:17] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 20:56 shared
[2025-07-28 22:16:17] -rw-r--r--. 2 boincer umatlas    542885 Jul 28 20:56 input.tar.gz
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas         0 Jul 28 20:56 boinc_lockfile
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 20:56 pandaJob.out
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas    977340 Jul 28 20:56 agis_schedconf.cvmfs.json
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas   1589827 Jul 28 20:56 agis_ddmendpoints.agis.ALL.json
[2025-07-28 22:16:17] drwx------. 4 boincer umatlas      4096 Jul 28 20:56 pilot3
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas      6841 Jul 28 22:10 init_data.xml
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas 207374133 Jul 28 22:14 HITS.45743349._040313.pool.root.1
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas       529 Jul 28 22:15 boinc_task_state.xml
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas      1040 Jul 28 22:15 memory_monitor_summary.json
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas    358728 Jul 28 22:15 log.45743349._040313.job.log.tgz.1
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas        95 Jul 28 22:15 pilot_heartbeat.json
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas      7826 Jul 28 22:15 heartbeat.json
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 22:15 boinc_mmap_file
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas        27 Jul 28 22:15 wrapper_checkpoint.txt
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas       823 Jul 28 22:16 pilotlog.txt
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas    467176 Jul 28 22:16 log.45743349._040313.job.log.1
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas       357 Jul 28 22:16 output.list
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas       620 Jul 28 22:16 runtime_log
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas    849920 Jul 28 22:16 result.tar.gz
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 22:16 runtime_log.err
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas       654 Jul 28 22:16 dAPNDmWAwz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmW10KDm9pR2Wn.diag
[2025-07-28 22:16:17] -rw-r--r--. 1 boincer umatlas     21624 Jul 28 22:16 stderr.txt
[2025-07-28 22:16:17] HITS file was successfully produced:
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas 207374133 Jul 28 22:14 shared/HITS.pool.root.1
[2025-07-28 22:16:17]  *** Contents of shared directory: ***
[2025-07-28 22:16:17] total 345100
[2025-07-28 22:16:17] -rw-r--r--. 2 boincer umatlas 144588252 Jul 28 20:56 ATLAS.root_0
[2025-07-28 22:16:17] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 20:56 start_atlas.sh
[2025-07-28 22:16:17] -rw-r--r--. 2 boincer umatlas    542885 Jul 28 20:56 input.tar.gz
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas 207374133 Jul 28 22:14 HITS.pool.root.1
[2025-07-28 22:16:17] -rw-------. 1 boincer umatlas    849920 Jul 28 22:16 result.tar.gz
22:16:18 (1351490): run_atlas exited; CPU time 43864.011558
22:16:18 (1351490): called boinc_finish(0)

</stderr_txt>
]]>

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