Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
18:59:21 (30907): wrapper (7.7.26015): starting
18:59:21 (30907): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 18:59:21] Arguments: --nthreads 12
[2025-07-28 18:59:21] Threads: 12
[2025-07-28 18:59:21] Checking for CVMFS
[2025-07-28 18:59:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 18:59:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 18:59:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 18:59:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 18:59:22] 2.11.2.0 2918 114073 97104 148868 0 1 14899539 20275200 1 130560 0 40208189 99.972 9717432 10654 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 18:59:22] CVMFS is ok
[2025-07-28 18:59:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 18:59:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 18:59:22] Further information can be found at the LHC@home message board.
[2025-07-28 18:59:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 18:59:22] Checking for apptainer binary...
[2025-07-28 18:59:22] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 18:59:22] Running /usr/bin/apptainer --version
[2025-07-28 18:59:22] apptainer version 1.3.2-1.el7
[2025-07-28 18:59:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 18:59:23] c-205-12.aglt2.org
[2025-07-28 18:59:23] apptainer works
[2025-07-28 18:59:23] Set ATHENA_PROC_NUMBER=12
[2025-07-28 18:59:23] Set ATHENA_CORE_NUMBER=12
[2025-07-28 18:59:23] Starting ATLAS job with PandaID=6749182596
[2025-07-28 18:59:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 20:38:37]  *** The last 200 lines of the pilot log: ***
[2025-07-28 20:38:37]  mtime=0
[2025-07-28 20:38:37]  protocol_id=None
[2025-07-28 20:38:37]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 20:38:37]  replicas=None
[2025-07-28 20:38:37]  scope=mc23_13p6TeV
[2025-07-28 20:38:37]  status=None
[2025-07-28 20:38:37]  status_code=0
[2025-07-28 20:38:37]  storage_token=
[2025-07-28 20:38:37]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6749182596/log.45697523._005905.job.log.tgz.1
[2025-07-28 20:38:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/21/log.45697523._005905.job.log.tgz.1
[2025-07-28 20:38:37]  workdir=None
[2025-07-28 20:38:37] ]
[2025-07-28 20:38:37] 2025-07-29 00:37:57,999 | INFO     | transferring file log.45697523._005905.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6749182596/log.45697523._005905.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 20:38:37] 2025-07-29 00:37:57,999 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6749182596/log.45697523._005905.job.log.tgz.1 /tmp/boinchome/slots/0/log.45697523._005905.job
[2025-07-28 20:38:37] 2025-07-29 00:37:58,022 | INFO     | adding to output.list: log.45697523._005905.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/21/log.45697523._005905.job.log.tg
[2025-07-28 20:38:37] 2025-07-29 00:37:58,023 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 20:38:37] 2025-07-29 00:37:58,023 | INFO     | summary of transferred files:
[2025-07-28 20:38:37] 2025-07-29 00:37:58,023 | INFO     |  -- lfn=log.45697523._005905.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 20:38:37] 2025-07-29 00:37:58,023 | INFO     | stage-out finished correctly
[2025-07-28 20:38:37] 2025-07-29 00:37:58,600 | INFO     | monitor loop #438: job 0:6749182596 is in state 'finished'
[2025-07-28 20:38:37] 2025-07-29 00:37:58,600 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 20:38:37] 2025-07-29 00:37:59,119 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 20:38:37] 2025-07-29 00:38:00,531 | INFO     | job 6749182596 has state=finished
[2025-07-28 20:38:37] 2025-07-29 00:38:00,531 | INFO     | preparing for final server update for job 6749182596 in state='finished'
[2025-07-28 20:38:37] 2025-07-29 00:38:00,532 | INFO     | this job has now completed (state=finished)
[2025-07-28 20:38:37] 2025-07-29 00:38:00,532 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 20:38:37] 2025-07-29 00:38:00,532 | INFO     | log transfer has been attempted: DONE
[2025-07-28 20:38:37] 2025-07-29 00:38:00,532 | INFO     | job 6749182596 has finished - writing final server update
[2025-07-28 20:38:37] 2025-07-29 00:38:00,533 | INFO     | total number of processed events: 400 (read)
[2025-07-28 20:38:37] 2025-07-29 00:38:00,533 | INFO     | executing command: lscpu
[2025-07-28 20:38:37] 2025-07-29 00:38:00,559 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 20:38:37] 2025-07-29 00:38:01,103 | INFO     | monitor loop #439: job 0:6749182596 is in state 'finished'
[2025-07-28 20:38:37] 2025-07-29 00:38:01,104 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 20:38:37] 2025-07-29 00:38:03,607 | INFO     | monitor loop #440: job 0:6749182596 is in state 'finished'
[2025-07-28 20:38:37] 2025-07-29 00:38:03,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 20:38:37] 2025-07-29 00:38:05,186 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 20:38:37] 2025-07-29 00:38:05,191 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1784.5833333333333
[2025-07-28 20:38:37] 2025-07-29 00:38:05,193 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749182596/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 20:38:37] 2025-07-29 00:38:05,194 | INFO     | extracted standard info from prmon json
[2025-07-28 20:38:37] 2025-07-29 00:38:05,195 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 20:38:37] 2025-07-29 00:38:05,195 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 20:38:37] 2025-07-29 00:38:05,195 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 20:38:37] 2025-07-29 00:38:05,195 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 20:38:37] 2025-07-29 00:38:05,197 | INFO     | fitting pss+swap vs Time
[2025-07-28 20:38:37] 2025-07-29 00:38:05,198 | INFO     | sum of square deviations: 226022842.5
[2025-07-28 20:38:37] 2025-07-29 00:38:05,198 | INFO     | sum of deviations: -3600791051.5
[2025-07-28 20:38:37] 2025-07-29 00:38:05,198 | INFO     | mean x: 1753746628.5
[2025-07-28 20:38:37] 2025-07-29 00:38:05,198 | INFO     | mean y: 2768589.5888888887
[2025-07-28 20:38:37] 2025-07-29 00:38:05,199 | INFO     | -- intersect: 27941870216.014526
[2025-07-28 20:38:37] 2025-07-29 00:38:05,199 | INFO     | intersect: 27941870216.014526
[2025-07-28 20:38:37] 2025-07-29 00:38:05,199 | INFO     | chi2: 0.07097047096788509
[2025-07-28 20:38:37] 2025-07-29 00:38:05,199 | INFO     | -- intersect: 27941870216.014526
[2025-07-28 20:38:37] 2025-07-29 00:38:05,199 | INFO     | current memory leak: -15.93 B/s (using 90 data points, chi2=0.07)
[2025-07-28 20:38:37] 2025-07-29 00:38:05,200 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2025-07-28 20:38:37] 2025-07-29 00:38:05,200 | INFO     | ..............................
[2025-07-28 20:38:37] 2025-07-29 00:38:05,200 | INFO     | . Timing measurements:
[2025-07-28 20:38:37] 2025-07-29 00:38:05,200 | INFO     | . get job = 0 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,201 | INFO     | . initial setup = 2 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,201 | INFO     | . payload setup = 10 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,201 | INFO     | . stage-in = 0 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,201 | INFO     | . payload execution = 5869 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,201 | INFO     | . stage-out = 0 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,202 | INFO     | . log creation = 0 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,202 | INFO     | ..............................
[2025-07-28 20:38:37] 2025-07-29 00:38:05,342 | INFO     | PID=2263 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 20:38:37] 2025-07-29 00:38:05,693 | INFO     | 
[2025-07-28 20:38:37] 2025-07-29 00:38:05,694 | INFO     | job summary report
[2025-07-28 20:38:37] 2025-07-29 00:38:05,698 | INFO     | --------------------------------------------------
[2025-07-28 20:38:37] 2025-07-29 00:38:05,698 | INFO     | PanDA job id: 6749182596
[2025-07-28 20:38:37] 2025-07-29 00:38:05,698 | INFO     | task id: 45697523
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | errors: (none)
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | pilot state: finished 
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | transexitcode: 0
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | exeerrorcode: 0
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | exeerrordiag: 
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | exitcode: 0
[2025-07-28 20:38:37] 2025-07-29 00:38:05,699 | INFO     | exitmsg: OK
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | cpuconsumptiontime: 64468 s
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | nevents: 400
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | neventsw: 0
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | pid: 9037
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | pgrp: 9037
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | corecount: 12
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | event service: False
[2025-07-28 20:38:37] 2025-07-29 00:38:05,700 | INFO     | sizes: {0: 2391827, 1: 2392026, 6: 2392288, 11: 2392316, 5883: 2419024, 5884: 2428022, 5885: 2428206, 5891: 2428400}
[2025-07-28 20:38:37] 2025-07-29 00:38:05,701 | INFO     | --------------------------------------------------
[2025-07-28 20:38:37] 2025-07-29 00:38:05,701 | INFO     | 
[2025-07-28 20:38:37] 2025-07-29 00:38:05,701 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 20:38:37] 2025-07-29 00:38:05,726 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,726 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,726 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,726 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,726 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,727 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,727 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,727 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,727 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,727 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,727 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,728 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,728 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,728 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,728 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,728 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,729 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,729 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 20:38:37] 2025-07-29 00:38:05,729 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,729 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 20:38:37] 2025-07-29 00:38:05,729 | INFO     | job 6749182596 has completed (purged errors)
[2025-07-28 20:38:37] 2025-07-29 00:38:05,730 | INFO     | overall cleanup function is called
[2025-07-28 20:38:37] 2025-07-29 00:38:06,738 | INFO     | --- collectZombieJob: --- 10, [9037]
[2025-07-28 20:38:37] 2025-07-29 00:38:06,738 | INFO     | zombie collector waiting for pid 9037
[2025-07-28 20:38:37] 2025-07-29 00:38:06,738 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 20:38:37] 2025-07-29 00:38:06,738 | INFO     | collected zombie processes
[2025-07-28 20:38:37] 2025-07-29 00:38:06,739 | INFO     | will attempt to kill all subprocesses of pid=9037
[2025-07-28 20:38:37] 2025-07-29 00:38:06,834 | INFO     | process IDs to be killed: [9037] (in reverse order)
[2025-07-28 20:38:37] 2025-07-29 00:38:06,882 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 20:38:37] 2025-07-29 00:38:06,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 20:38:37] 2025-07-29 00:38:06,887 | INFO     | did not find any defunct processes belonging to 9037
[2025-07-28 20:38:37] 2025-07-29 00:38:06,889 | INFO     | did not find any defunct processes belonging to 9037
[2025-07-28 20:38:37] 2025-07-29 00:38:06,889 | INFO     | ready for new job
[2025-07-28 20:38:37] 2025-07-29 00:38:06,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 20:38:37] 2025-07-29 00:38:06,890 | INFO     | ***************************************
[2025-07-28 20:38:37] 2025-07-29 00:38:06,890 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 20:38:37] 2025-07-29 00:38:06,890 | INFO     | ***************************************
[2025-07-28 20:38:37] 2025-07-29 00:38:06,890 | INFO     | 
[2025-07-28 20:38:37] 2025-07-29 00:38:06,891 | INFO     | architecture information:
[2025-07-28 20:38:37] 2025-07-29 00:38:06,891 | INFO     | executing command: cat /etc/os-release
[2025-07-28 20:38:37] 2025-07-29 00:38:06,906 | INFO     | cat /etc/os-release:
[2025-07-28 20:38:37] NAME="CentOS Linux"
[2025-07-28 20:38:37] VERSION="7 (Core)"
[2025-07-28 20:38:37] ID="centos"
[2025-07-28 20:38:37] ID_LIKE="rhel fedora"
[2025-07-28 20:38:37] VERSION_ID="7"
[2025-07-28 20:38:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 20:38:37] ANSI_COLOR="0;31"
[2025-07-28 20:38:37] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 20:38:37] HOME_URL="https://www.centos.org/"
[2025-07-28 20:38:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 20:38:37] 
[2025-07-28 20:38:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 20:38:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 20:38:37] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 20:38:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 20:38:37] 
[2025-07-28 20:38:37] 2025-07-29 00:38:06,907 | INFO     | ***************************************
[2025-07-28 20:38:37] 2025-07-29 00:38:07,410 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 20:38:37] 2025-07-29 00:38:07,426 | INFO     | sufficient remaining disk space (29125246976 B)
[2025-07-28 20:38:37] 2025-07-29 00:38:07,426 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 20:38:37] 2025-07-29 00:38:07,426 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 20:38:37] 2025-07-29 00:38:07,427 | INFO     | update_server=False
[2025-07-28 20:38:37] 2025-07-29 00:38:07,427 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 20:38:37] 2025-07-29 00:38:07,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 20:38:37] 2025-07-29 00:38:07,427 | INFO     | aborting loop
[2025-07-28 20:38:37] 2025-07-29 00:38:07,497 | INFO     | all data control threads have been joined
[2025-07-28 20:38:37] 2025-07-29 00:38:08,097 | INFO     | all payload control threads have been joined
[2025-07-28 20:38:37] 2025-07-29 00:38:08,432 | INFO     | [job] job monitor thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:08,433 | INFO     | [job] retrieve thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:08,451 | INFO     | [job] validate thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:08,503 | INFO     | [data] control thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:08,626 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 20:38:37] 2025-07-29 00:38:08,672 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:08,908 | INFO     | all job control threads have been joined
[2025-07-28 20:38:37] 2025-07-29 00:38:08,916 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:09,034 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:09,102 | INFO     | [payload] control thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:09,390 | INFO     | [payload] validate_post thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:09,455 | INFO     | [data] copytool_in thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:09,762 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 20:38:37] 2025-07-29 00:38:09,914 | INFO     | [job] control thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:09,967 | INFO     | [payload] failed_post thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:10,297 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 20:38:37] 2025-07-29 00:38:10,631 | INFO     | [data] copytool_out thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:11,303 | INFO     | [job] queue monitor thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:13,768 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:18,482 | INFO     | job.realtimelogging is not enabled
[2025-07-28 20:38:37] 2025-07-29 00:38:19,488 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 20:38:37] 2025-07-29 00:38:19,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140665413535552)>', '<ExcThread(monitor, started 140664566163200)>']
[2025-07-28 20:38:37] 2025-07-29 00:38:25,013 | INFO     | all workflow threads have been joined
[2025-07-28 20:38:37] 2025-07-29 00:38:25,014 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 20:38:37] 2025-07-29 00:38:25,014 | INFO     | traces error code: 0
[2025-07-28 20:38:37] 2025-07-29 00:38:25,014 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 20:38:37] 2025-07-29 00:38:37,541 | INFO     | PID=2263 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 20:38:37] 2025-07-29 00:38:37,541 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 20:38:37] 2025-07-29 00:38:37,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 20:38:37] 2025-07-29 00:38:37,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 20:38:37] 2025-07-29 00:38:37,542 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 20:38:37] 2025-07-29 00:38:37,542 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 20:38:37] 2025-07-29 00:38:37,542 | INFO     | [monitor] control thread has ended
[2025-07-28 20:38:37] 2025-07-29 00:38:37,626 [wrapper] ==== pilot stdout END ====
[2025-07-28 20:38:37] 2025-07-29 00:38:37,629 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 20:38:37] 2025-07-29 00:38:37,633 [wrapper] pilotpid: 2263
[2025-07-28 20:38:37] 2025-07-29 00:38:37,637 [wrapper] Pilot exit status: 0
[2025-07-28 20:38:37] 2025-07-29 00:38:37,652 [wrapper] pandaids: 6749182596
[2025-07-28 20:38:37] 2025-07-29 00:38:37,692 [wrapper] cleanup supervisor_pilot  6014 2264
[2025-07-28 20:38:37] 2025-07-29 00:38:37,696 [wrapper] Test setup, not cleaning
[2025-07-28 20:38:37] 2025-07-29 00:38:37,700 [wrapper] apfmon messages muted
[2025-07-28 20:38:37] 2025-07-29 00:38:37,704 [wrapper] ==== wrapper stdout END ====
[2025-07-28 20:38:37] 2025-07-29 00:38:37,708 [wrapper] ==== wrapper stderr END ====
[2025-07-28 20:38:37]  *** Error codes and diagnostics ***
[2025-07-28 20:38:37]     "exeErrorCode": 0,
[2025-07-28 20:38:37]     "exeErrorDiag": "",
[2025-07-28 20:38:37]     "pilotErrorCode": 0,
[2025-07-28 20:38:37]     "pilotErrorDiag": "",
[2025-07-28 20:38:37]  *** Listing of results directory ***
[2025-07-28 20:38:37] total 566984
[2025-07-28 20:38:37] -rwx------ 1 boincer umatlas     36292 Jul 28 18:58 runpilot2-wrapper.sh
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 18:58 queuedata.json
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 18:58 pilot3.tar.gz
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas       100 Jul 28 18:59 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 20:38:37] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 18:59 run_atlas
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas       105 Jul 28 18:59 job.xml
[2025-07-28 20:38:37] -rw-r--r-- 2 boincer umatlas 316364390 Jul 28 18:59 EVNT.45697521._000124.pool.root.1
[2025-07-28 20:38:37] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 18:59 start_atlas.sh
[2025-07-28 20:38:37] drwxrwx--x 2 boincer umatlas      4096 Jul 28 18:59 shared
[2025-07-28 20:38:37] -rw-r--r-- 2 boincer umatlas    542898 Jul 28 18:59 input.tar.gz
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas         0 Jul 28 18:59 boinc_lockfile
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas      2635 Jul 28 18:59 pandaJob.out
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas    977340 Jul 28 18:59 agis_schedconf.cvmfs.json
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas   1589827 Jul 28 18:59 agis_ddmendpoints.agis.ALL.json
[2025-07-28 20:38:37] drwx------ 4 boincer umatlas      4096 Jul 28 18:59 pilot3
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas 258488767 Jul 28 20:37 HITS.45697523._005905.pool.root.1
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas      5868 Jul 28 20:37 init_data.xml
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas       529 Jul 28 20:37 boinc_task_state.xml
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas      1046 Jul 28 20:37 memory_monitor_summary.json
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas        95 Jul 28 20:37 pilot_heartbeat.json
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas    378648 Jul 28 20:37 log.45697523._005905.job.log.tgz.1
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 20:38 boinc_mmap_file
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas        27 Jul 28 20:38 wrapper_checkpoint.txt
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas      7843 Jul 28 20:38 heartbeat.json
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas       814 Jul 28 20:38 pilotlog.txt
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas    550813 Jul 28 20:38 log.45697523._005905.job.log.1
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas       357 Jul 28 20:38 output.list
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas       620 Jul 28 20:38 runtime_log
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas    952320 Jul 28 20:38 result.tar.gz
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 20:38 runtime_log.err
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas       659 Jul 28 20:38 9EkLDm4yl07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmsjWLDmI1jYDn.diag
[2025-07-28 20:38:37] -rw-r--r-- 1 boincer umatlas     21781 Jul 28 20:38 stderr.txt
[2025-07-28 20:38:37] HITS file was successfully produced:
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas 258488767 Jul 28 20:37 shared/HITS.pool.root.1
[2025-07-28 20:38:37]  *** Contents of shared directory: ***
[2025-07-28 20:38:37] total 562872
[2025-07-28 20:38:37] -rw-r--r-- 2 boincer umatlas 316364390 Jul 28 18:59 ATLAS.root_0
[2025-07-28 20:38:37] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 18:59 start_atlas.sh
[2025-07-28 20:38:37] -rw-r--r-- 2 boincer umatlas    542898 Jul 28 18:59 input.tar.gz
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas 258488767 Jul 28 20:37 HITS.pool.root.1
[2025-07-28 20:38:37] -rw------- 1 boincer umatlas    952320 Jul 28 20:38 result.tar.gz
20:38:39 (30907): run_atlas exited; CPU time 64440.688271
20:38:39 (30907): called boinc_finish(0)

</stderr_txt>
]]>

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