Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:09:18 (3140865): wrapper (7.7.26015): starting
18:09:18 (3140865): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 18:09:18] Arguments: --nthreads 8
[2025-07-28 18:09:18] Threads: 8
[2025-07-28 18:09:18] Checking for CVMFS
[2025-07-28 18:09:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 18:09:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 18:09:18] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 18:09:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 18:09:18] 2.13.1.0 675479 16179 178548 148866 0 55 20925529 40960001 18332 16776704 0 42002056 99.857 30737453 48860 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 18:09:18] CVMFS is ok
[2025-07-28 18:09:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 18:09:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 18:09:18] Further information can be found at the LHC@home message board.
[2025-07-28 18:09:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 18:09:18] Checking for apptainer binary...
[2025-07-28 18:09:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 18:09:18] Running /usr/bin/apptainer --version
[2025-07-28 18:09:18] apptainer version 1.4.1-1.el9
[2025-07-28 18:09:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 18:09:19] c-212-11.aglt2.org
[2025-07-28 18:09:19] apptainer works
[2025-07-28 18:09:19] Set ATHENA_PROC_NUMBER=8
[2025-07-28 18:09:19] Set ATHENA_CORE_NUMBER=8
[2025-07-28 18:09:19] Starting ATLAS job with PandaID=6749160864
[2025-07-28 18:09:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 19:46:00]  *** The last 200 lines of the pilot log: ***
[2025-07-28 19:46:00]  workdir=None
[2025-07-28 19:46:00] ]
[2025-07-28 19:46:00] 2025-07-28 23:45:21,895 | INFO     | transferring file log.45743349._056539.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6749160864/log.45743349._056539.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 19:46:00] 2025-07-28 23:45:21,896 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6749160864/log.45743349._056539.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056539.job
[2025-07-28 19:46:00] 2025-07-28 23:45:21,922 | INFO     | adding to output.list: log.45743349._056539.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/ed/log.45743349._056539.job.log.tg
[2025-07-28 19:46:00] 2025-07-28 23:45:21,923 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 19:46:00] 2025-07-28 23:45:21,923 | INFO     | summary of transferred files:
[2025-07-28 19:46:00] 2025-07-28 23:45:21,923 | INFO     |  -- lfn=log.45743349._056539.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 19:46:00] 2025-07-28 23:45:21,923 | INFO     | stage-out finished correctly
[2025-07-28 19:46:00] 2025-07-28 23:45:25,021 | WARNING  | process 3154611 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 19:46:00] 2025-07-28 23:45:25,021 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749160864/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,022 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749160864/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,023 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3258440 B
[2025-07-28 19:46:00] 2025-07-28 23:45:25,023 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15890 B
[2025-07-28 19:46:00] 2025-07-28 23:45:25,023 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 19:46:00] 2025-07-28 23:45:25,037 | INFO     | sufficient remaining disk space (129808465920 B)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,038 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,038 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6749160864: 3563820 B (within 2537553920 B limit)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,039 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6749160864/HITS.45743349._056539.pool.root.1 does not exist (skip from workdir size calculation)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,039 | INFO     | total size of present files: 0 B (workdir size: 3563820 B)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,039 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6749160864/HITS.45743349._056539.pool.root.1 since it does not exist
[2025-07-28 19:46:00] 2025-07-28 23:45:25,105 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 19:46:00] 2025-07-28 23:45:25,150 | INFO     | job 6749160864 has state=finished
[2025-07-28 19:46:00] 2025-07-28 23:45:25,150 | INFO     | preparing for final server update for job 6749160864 in state='finished'
[2025-07-28 19:46:00] 2025-07-28 23:45:25,150 | INFO     | this job has now completed (state=finished)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,151 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,151 | INFO     | log transfer has been attempted: DONE
[2025-07-28 19:46:00] 2025-07-28 23:45:25,151 | INFO     | job 6749160864 has finished - writing final server update
[2025-07-28 19:46:00] 2025-07-28 23:45:25,151 | INFO     | total number of processed events: 400 (read)
[2025-07-28 19:46:00] 2025-07-28 23:45:25,152 | INFO     | executing command: lscpu
[2025-07-28 19:46:00] 2025-07-28 23:45:25,201 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 19:46:00] 2025-07-28 23:45:25,334 | INFO     | number of running child processes to parent process 3154611: 1
[2025-07-28 19:46:00] 2025-07-28 23:45:25,334 | INFO     | maximum number of monitored processes: 6
[2025-07-28 19:46:00] 2025-07-28 23:45:25,820 | INFO     | PID=3145278 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 19:46:00] 2025-07-28 23:45:25,820 | INFO     | .. there are 13 such processes running
[2025-07-28 19:46:00] 2025-07-28 23:45:27,840 | INFO     | monitor loop #413: job 0:6749160864 is in state 'finished'
[2025-07-28 19:46:00] 2025-07-28 23:45:27,840 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 19:46:00] 2025-07-28 23:45:28,686 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 19:46:00] 2025-07-28 23:45:28,691 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3013.4676562499994
[2025-07-28 19:46:00] 2025-07-28 23:45:28,703 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749160864/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 19:46:00] 2025-07-28 23:45:28,703 | INFO     | extracted standard info from prmon json
[2025-07-28 19:46:00] 2025-07-28 23:45:28,703 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 19:46:00] 2025-07-28 23:45:28,703 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 19:46:00] 2025-07-28 23:45:28,704 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 19:46:00] 2025-07-28 23:45:28,704 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 19:46:00] 2025-07-28 23:45:28,705 | INFO     | fitting pss+swap vs Time
[2025-07-28 19:46:00] 2025-07-28 23:45:28,706 | INFO     | sum of square deviations: 204164926.9885056
[2025-07-28 19:46:00] 2025-07-28 23:45:28,706 | INFO     | sum of deviations: -3406762273.4367814
[2025-07-28 19:46:00] 2025-07-28 23:45:28,706 | INFO     | mean x: 1753743536.0114942
[2025-07-28 19:46:00] 2025-07-28 23:45:28,706 | INFO     | mean y: 2627041.436781609
[2025-07-28 19:46:00] 2025-07-28 23:45:28,706 | INFO     | -- intersect: 29266161204.206787
[2025-07-28 19:46:00] 2025-07-28 23:45:28,706 | INFO     | intersect: 29266161204.206787
[2025-07-28 19:46:00] 2025-07-28 23:45:28,706 | INFO     | chi2: 0.0159011979151546
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | -- intersect: 29266161204.206787
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | current memory leak: -16.69 B/s (using 87 data points, chi2=0.02)
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | could have reported an average CPU frequency of 2948 MHz (7 samples)
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | ..............................
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . Timing measurements:
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . get job = 0 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . initial setup = 3 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . payload setup = 10 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . stage-in = 0 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . payload execution = 5715 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . stage-out = 0 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | . log creation = 0 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,707 | INFO     | ..............................
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | 
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | job summary report
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | --------------------------------------------------
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | PanDA job id: 6749160864
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | task id: 45743349
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | errors: (none)
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | pilot state: finished 
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | transexitcode: 0
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | exeerrorcode: 0
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | exeerrordiag: 
[2025-07-28 19:46:00] 2025-07-28 23:45:28,776 | INFO     | exitcode: 0
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | exitmsg: OK
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | cpuconsumptiontime: 39152 s
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | nevents: 400
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | neventsw: 0
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | pid: 3154611
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | pgrp: 3154611
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | corecount: 8
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | event service: False
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | sizes: {0: 2391858, 1: 2391858, 6: 2392148, 11: 2392176, 5729: 2418773, 5731: 2427771, 5734: 2427983, 5738: 2428177}
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | --------------------------------------------------
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | 
[2025-07-28 19:46:00] 2025-07-28 23:45:28,777 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 19:46:00] 2025-07-28 23:45:28,797 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,798 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | job 6749160864 has completed (purged errors)
[2025-07-28 19:46:00] 2025-07-28 23:45:28,799 | INFO     | overall cleanup function is called
[2025-07-28 19:46:00] 2025-07-28 23:45:29,807 | INFO     | --- collectZombieJob: --- 10, [3154611]
[2025-07-28 19:46:00] 2025-07-28 23:45:29,807 | INFO     | zombie collector waiting for pid 3154611
[2025-07-28 19:46:00] 2025-07-28 23:45:29,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 19:46:00] 2025-07-28 23:45:29,807 | INFO     | collected zombie processes
[2025-07-28 19:46:00] 2025-07-28 23:45:29,807 | INFO     | will attempt to kill all subprocesses of pid=3154611
[2025-07-28 19:46:00] 2025-07-28 23:45:30,084 | INFO     | process IDs to be killed: [3154611] (in reverse order)
[2025-07-28 19:46:00] 2025-07-28 23:45:30,176 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 19:46:00] 2025-07-28 23:45:30,177 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 19:46:00] 2025-07-28 23:45:30,189 | INFO     | did not find any defunct processes belonging to 3154611
[2025-07-28 19:46:00] 2025-07-28 23:45:30,201 | INFO     | did not find any defunct processes belonging to 3154611
[2025-07-28 19:46:00] 2025-07-28 23:45:30,202 | INFO     | ready for new job
[2025-07-28 19:46:00] 2025-07-28 23:45:30,202 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 19:46:00] 2025-07-28 23:45:30,204 | INFO     | ***************************************
[2025-07-28 19:46:00] 2025-07-28 23:45:30,204 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 19:46:00] 2025-07-28 23:45:30,204 | INFO     | ***************************************
[2025-07-28 19:46:00] 2025-07-28 23:45:30,204 | INFO     | 
[2025-07-28 19:46:00] 2025-07-28 23:45:30,209 | INFO     | architecture information:
[2025-07-28 19:46:00] 2025-07-28 23:45:30,209 | INFO     | executing command: cat /etc/os-release
[2025-07-28 19:46:00] 2025-07-28 23:45:30,220 | INFO     | cat /etc/os-release:
[2025-07-28 19:46:00] NAME="CentOS Linux"
[2025-07-28 19:46:00] VERSION="7 (Core)"
[2025-07-28 19:46:00] ID="centos"
[2025-07-28 19:46:00] ID_LIKE="rhel fedora"
[2025-07-28 19:46:00] VERSION_ID="7"
[2025-07-28 19:46:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 19:46:00] ANSI_COLOR="0;31"
[2025-07-28 19:46:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 19:46:00] HOME_URL="https://www.centos.org/"
[2025-07-28 19:46:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 19:46:00] 
[2025-07-28 19:46:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 19:46:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 19:46:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 19:46:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 19:46:00] 
[2025-07-28 19:46:00] 2025-07-28 23:45:30,220 | INFO     | ***************************************
[2025-07-28 19:46:00] 2025-07-28 23:45:30,724 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 19:46:00] 2025-07-28 23:45:30,741 | INFO     | sufficient remaining disk space (129812660224 B)
[2025-07-28 19:46:00] 2025-07-28 23:45:30,742 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 19:46:00] 2025-07-28 23:45:30,742 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 19:46:00] 2025-07-28 23:45:30,742 | INFO     | update_server=False
[2025-07-28 19:46:00] 2025-07-28 23:45:30,742 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 19:46:00] 2025-07-28 23:45:30,743 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 19:46:00] 2025-07-28 23:45:30,743 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 19:46:00] 2025-07-28 23:45:31,157 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 19:46:00] 2025-07-28 23:45:31,309 | INFO     | all job control threads have been joined
[2025-07-28 19:46:00] 2025-07-28 23:45:31,350 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 19:46:00] 2025-07-28 23:45:31,350 | INFO     | aborting loop
[2025-07-28 19:46:00] 2025-07-28 23:45:31,748 | INFO     | [job] retrieve thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:31,749 | INFO     | [job] queue monitor thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:31,794 | INFO     | all data control threads have been joined
[2025-07-28 19:46:00] 2025-07-28 23:45:31,997 | INFO     | all payload control threads have been joined
[2025-07-28 19:46:00] 2025-07-28 23:45:32,004 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,314 | INFO     | [job] control thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,354 | INFO     | [job] validate thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,355 | INFO     | [job] job monitor thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,384 | INFO     | [payload] validate_post thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,458 | INFO     | [payload] failed_post thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,716 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,748 | INFO     | [data] copytool_out thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,799 | INFO     | [data] control thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,838 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:32,952 | INFO     | [data] copytool_in thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:33,003 | INFO     | [payload] control thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:33,137 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:35,163 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 19:46:00] 2025-07-28 23:45:35,734 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140401160091456)>', '<ExcThread(monitor, started 140400517961472)>']
[2025-07-28 19:46:00] 2025-07-28 23:45:40,759 | INFO     | all workflow threads have been joined
[2025-07-28 19:46:00] 2025-07-28 23:45:40,760 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 19:46:00] 2025-07-28 23:45:40,761 | INFO     | traces error code: 0
[2025-07-28 19:46:00] 2025-07-28 23:45:40,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 19:46:00] 2025-07-28 23:46:00,287 | INFO     | PID=3145278 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 19:46:00] 2025-07-28 23:46:00,287 | INFO     | .. there are 13 such processes running
[2025-07-28 19:46:00] 2025-07-28 23:46:00,287 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 19:46:00] 2025-07-28 23:46:00,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 19:46:00] 2025-07-28 23:46:00,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 19:46:00] 2025-07-28 23:46:00,287 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 19:46:00] 2025-07-28 23:46:00,287 | INFO     | [monitor] control thread has ended
[2025-07-28 19:46:00] 2025-07-28 23:46:00,398 [wrapper] ==== pilot stdout END ====
[2025-07-28 19:46:00] 2025-07-28 23:46:00,402 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 19:46:00] 2025-07-28 23:46:00,404 [wrapper] pilotpid: 3145278
[2025-07-28 19:46:00] 2025-07-28 23:46:00,406 [wrapper] Pilot exit status: 0
[2025-07-28 19:46:00] 2025-07-28 23:46:00,417 [wrapper] pandaids: 6749160864
[2025-07-28 19:46:00] 2025-07-28 23:46:00,501 [wrapper] cleanup supervisor_pilot 3308902 3145279
[2025-07-28 19:46:00] 2025-07-28 23:46:00,503 [wrapper] Test setup, not cleaning
[2025-07-28 19:46:00] 2025-07-28 23:46:00,505 [wrapper] apfmon messages muted
[2025-07-28 19:46:00] 2025-07-28 23:46:00,507 [wrapper] ==== wrapper stdout END ====
[2025-07-28 19:46:00] 2025-07-28 23:46:00,509 [wrapper] ==== wrapper stderr END ====
[2025-07-28 19:46:00]  *** Error codes and diagnostics ***
[2025-07-28 19:46:00]     "exeErrorCode": 0,
[2025-07-28 19:46:00]     "exeErrorDiag": "",
[2025-07-28 19:46:00]     "pilotErrorCode": 0,
[2025-07-28 19:46:00]     "pilotErrorDiag": "",
[2025-07-28 19:46:00]  *** Listing of results directory ***
[2025-07-28 19:46:00] total 438844
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 18:03 pilot3.tar.gz
[2025-07-28 19:46:00] -rwx------. 1 boincer umatlas     36292 Jul 28 18:08 runpilot2-wrapper.sh
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 18:08 queuedata.json
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas       100 Jul 28 18:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 19:46:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 18:09 run_atlas
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas       105 Jul 28 18:09 job.xml
[2025-07-28 19:46:00] -rw-r--r--. 2 boincer umatlas 230205103 Jul 28 18:09 EVNT.45743347._002588.pool.root.1
[2025-07-28 19:46:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 18:09 start_atlas.sh
[2025-07-28 19:46:00] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 18:09 shared
[2025-07-28 19:46:00] -rw-r--r--. 2 boincer umatlas    542895 Jul 28 18:09 input.tar.gz
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas         0 Jul 28 18:09 boinc_lockfile
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 18:09 pandaJob.out
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas    977332 Jul 28 18:09 agis_schedconf.cvmfs.json
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas   1589827 Jul 28 18:09 agis_ddmendpoints.agis.ALL.json
[2025-07-28 19:46:00] drwx------. 4 boincer umatlas      4096 Jul 28 18:09 pilot3
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas      6944 Jul 28 19:36 init_data.xml
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas 213562933 Jul 28 19:44 HITS.45743349._056539.pool.root.1
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas       530 Jul 28 19:44 boinc_task_state.xml
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas        95 Jul 28 19:45 pilot_heartbeat.json
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas      1031 Jul 28 19:45 memory_monitor_summary.json
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas    314991 Jul 28 19:45 log.45743349._056539.job.log.tgz.1
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas      7773 Jul 28 19:45 heartbeat.json
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas        27 Jul 28 19:45 wrapper_checkpoint.txt
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 19:45 boinc_mmap_file
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas       823 Jul 28 19:46 pilotlog.txt
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas    551696 Jul 28 19:46 log.45743349._056539.job.log.1
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas       357 Jul 28 19:46 output.list
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas       620 Jul 28 19:46 runtime_log
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas    890880 Jul 28 19:46 result.tar.gz
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 19:46 runtime_log.err
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas       654 Jul 28 19:46 Ij3KDmgCl07n9Rq4apOajLDm4fhM0noT9bVof3QYDm3G3KDm6YzNDm.diag
[2025-07-28 19:46:00] -rw-r--r--. 1 boincer umatlas     22695 Jul 28 19:46 stderr.txt
[2025-07-28 19:46:00] HITS file was successfully produced:
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas 213562933 Jul 28 19:44 shared/HITS.pool.root.1
[2025-07-28 19:46:00]  *** Contents of shared directory: ***
[2025-07-28 19:46:00] total 434796
[2025-07-28 19:46:00] -rw-r--r--. 2 boincer umatlas 230205103 Jul 28 18:09 ATLAS.root_0
[2025-07-28 19:46:00] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 18:09 start_atlas.sh
[2025-07-28 19:46:00] -rw-r--r--. 2 boincer umatlas    542895 Jul 28 18:09 input.tar.gz
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas 213562933 Jul 28 19:44 HITS.pool.root.1
[2025-07-28 19:46:00] -rw-------. 1 boincer umatlas    890880 Jul 28 19:46 result.tar.gz
19:46:01 (3140865): run_atlas exited; CPU time 39250.124307
19:46:01 (3140865): called boinc_finish(0)

</stderr_txt>
]]>

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