Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:06:07 (30382): wrapper (7.7.26015): starting
17:06:07 (30382): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 17:06:07] Arguments: --nthreads 12
[2025-07-28 17:06:07] Threads: 12
[2025-07-28 17:06:07] Checking for CVMFS
[2025-07-28 17:06:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 17:06:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 17:06:07] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 17:06:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 17:06:08] 2.11.2.0 2924 113913 97920 148863 0 59 15336331 20275200 1 130560 0 40862677 99.972 10327776 11325 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 17:06:08] CVMFS is ok
[2025-07-28 17:06:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 17:06:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 17:06:08] Further information can be found at the LHC@home message board.
[2025-07-28 17:06:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 17:06:08] Checking for apptainer binary...
[2025-07-28 17:06:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 17:06:08] Running /usr/bin/apptainer --version
[2025-07-28 17:06:08] apptainer version 1.3.2-1.el7
[2025-07-28 17:06:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 17:06:09] c-205-28.aglt2.org
[2025-07-28 17:06:09] apptainer works
[2025-07-28 17:06:09] Set ATHENA_PROC_NUMBER=12
[2025-07-28 17:06:09] Set ATHENA_CORE_NUMBER=12
[2025-07-28 17:06:09] Starting ATLAS job with PandaID=6745015216
[2025-07-28 17:06:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 18:29:48]  *** The last 200 lines of the pilot log: ***
[2025-07-28 18:29:48]  is_tar=False
[2025-07-28 18:29:48]  lfn=log.45743349._020134.job.log.tgz.1
[2025-07-28 18:29:48]  mtime=0
[2025-07-28 18:29:48]  protocol_id=None
[2025-07-28 18:29:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 18:29:48]  replicas=None
[2025-07-28 18:29:48]  scope=mc23_13p6TeV
[2025-07-28 18:29:48]  status=None
[2025-07-28 18:29:48]  status_code=0
[2025-07-28 18:29:48]  storage_token=
[2025-07-28 18:29:48]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745015216/log.45743349._020134.job.log.tgz.1
[2025-07-28 18:29:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/cd/log.45743349._020134.job.log.tgz.1
[2025-07-28 18:29:48]  workdir=None
[2025-07-28 18:29:48] ]
[2025-07-28 18:29:48] 2025-07-28 22:29:10,064 | INFO     | transferring file log.45743349._020134.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745015216/log.45743349._020134.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 18:29:48] 2025-07-28 22:29:10,064 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745015216/log.45743349._020134.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._020134.job
[2025-07-28 18:29:48] 2025-07-28 22:29:10,086 | INFO     | adding to output.list: log.45743349._020134.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/cd/log.45743349._020134.job.log.tg
[2025-07-28 18:29:48] 2025-07-28 22:29:10,087 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 18:29:48] 2025-07-28 22:29:10,087 | INFO     | summary of transferred files:
[2025-07-28 18:29:48] 2025-07-28 22:29:10,088 | INFO     |  -- lfn=log.45743349._020134.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 18:29:48] 2025-07-28 22:29:10,088 | INFO     | stage-out finished correctly
[2025-07-28 18:29:48] 2025-07-28 22:29:10,216 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 18:29:48] 2025-07-28 22:29:10,464 | INFO     | job 6745015216 has state=finished
[2025-07-28 18:29:48] 2025-07-28 22:29:10,465 | INFO     | preparing for final server update for job 6745015216 in state='finished'
[2025-07-28 18:29:48] 2025-07-28 22:29:10,465 | INFO     | this job has now completed (state=finished)
[2025-07-28 18:29:48] 2025-07-28 22:29:10,465 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 18:29:48] 2025-07-28 22:29:10,466 | INFO     | log transfer has been attempted: DONE
[2025-07-28 18:29:48] 2025-07-28 22:29:10,466 | INFO     | job 6745015216 has finished - writing final server update
[2025-07-28 18:29:48] 2025-07-28 22:29:10,466 | INFO     | total number of processed events: 400 (read)
[2025-07-28 18:29:48] 2025-07-28 22:29:10,467 | INFO     | executing command: lscpu
[2025-07-28 18:29:48] 2025-07-28 22:29:10,494 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 18:29:48] 2025-07-28 22:29:13,421 | INFO     | PID=2553 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 18:29:48] 2025-07-28 22:29:15,626 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 18:29:48] 2025-07-28 22:29:15,629 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-28 18:29:48] 2025-07-28 22:29:15,632 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745015216/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 18:29:48] 2025-07-28 22:29:15,633 | INFO     | extracted standard info from prmon json
[2025-07-28 18:29:48] 2025-07-28 22:29:15,633 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 18:29:48] 2025-07-28 22:29:15,633 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 18:29:48] 2025-07-28 22:29:15,634 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 18:29:48] 2025-07-28 22:29:15,634 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 18:29:48] 2025-07-28 22:29:15,635 | INFO     | fitting pss+swap vs Time
[2025-07-28 18:29:48] 2025-07-28 22:29:15,636 | INFO     | sum of square deviations: 125630262.5
[2025-07-28 18:29:48] 2025-07-28 22:29:15,636 | INFO     | sum of deviations: -5444788386.0
[2025-07-28 18:29:48] 2025-07-28 22:29:15,636 | INFO     | mean x: 1753739345.5
[2025-07-28 18:29:48] 2025-07-28 22:29:15,636 | INFO     | mean y: 2727588.4054054054
[2025-07-28 18:29:48] 2025-07-28 22:29:15,636 | INFO     | -- intersect: 76009411252.30081
[2025-07-28 18:29:48] 2025-07-28 22:29:15,637 | INFO     | intersect: 76009411252.30081
[2025-07-28 18:29:48] 2025-07-28 22:29:15,637 | INFO     | chi2: 0.08584258535532331
[2025-07-28 18:29:48] 2025-07-28 22:29:15,637 | INFO     | -- intersect: 76009411252.30081
[2025-07-28 18:29:48] 2025-07-28 22:29:15,637 | INFO     | current memory leak: -43.34 B/s (using 74 data points, chi2=0.09)
[2025-07-28 18:29:48] 2025-07-28 22:29:15,637 | INFO     | could have reported an average CPU frequency of 2054 MHz (6 samples)
[2025-07-28 18:29:48] 2025-07-28 22:29:15,637 | INFO     | ..............................
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . Timing measurements:
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . get job = 0 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . initial setup = 2 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . payload setup = 9 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . stage-in = 0 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . payload execution = 4940 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . stage-out = 0 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | . log creation = 0 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,638 | INFO     | ..............................
[2025-07-28 18:29:48] 2025-07-28 22:29:15,723 | INFO     | 
[2025-07-28 18:29:48] 2025-07-28 22:29:15,723 | INFO     | job summary report
[2025-07-28 18:29:48] 2025-07-28 22:29:15,723 | INFO     | --------------------------------------------------
[2025-07-28 18:29:48] 2025-07-28 22:29:15,723 | INFO     | PanDA job id: 6745015216
[2025-07-28 18:29:48] 2025-07-28 22:29:15,723 | INFO     | task id: 45743349
[2025-07-28 18:29:48] 2025-07-28 22:29:15,724 | INFO     | errors: (none)
[2025-07-28 18:29:48] 2025-07-28 22:29:15,724 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 18:29:48] 2025-07-28 22:29:15,724 | INFO     | pilot state: finished 
[2025-07-28 18:29:48] 2025-07-28 22:29:15,724 | INFO     | transexitcode: 0
[2025-07-28 18:29:48] 2025-07-28 22:29:15,724 | INFO     | exeerrorcode: 0
[2025-07-28 18:29:48] 2025-07-28 22:29:15,724 | INFO     | exeerrordiag: 
[2025-07-28 18:29:48] 2025-07-28 22:29:15,724 | INFO     | exitcode: 0
[2025-07-28 18:29:48] 2025-07-28 22:29:15,725 | INFO     | exitmsg: OK
[2025-07-28 18:29:48] 2025-07-28 22:29:15,725 | INFO     | cpuconsumptiontime: 53685 s
[2025-07-28 18:29:48] 2025-07-28 22:29:15,725 | INFO     | nevents: 400
[2025-07-28 18:29:48] 2025-07-28 22:29:15,725 | INFO     | neventsw: 0
[2025-07-28 18:29:48] 2025-07-28 22:29:15,725 | INFO     | pid: 9014
[2025-07-28 18:29:48] 2025-07-28 22:29:15,725 | INFO     | pgrp: 9014
[2025-07-28 18:29:48] 2025-07-28 22:29:15,726 | INFO     | corecount: 12
[2025-07-28 18:29:48] 2025-07-28 22:29:15,726 | INFO     | event service: False
[2025-07-28 18:29:48] 2025-07-28 22:29:15,726 | INFO     | sizes: {0: 2391901, 5: 2392163, 11: 2392219, 4950: 2418460, 4951: 2427514, 4957: 2427652}
[2025-07-28 18:29:48] 2025-07-28 22:29:15,726 | INFO     | --------------------------------------------------
[2025-07-28 18:29:48] 2025-07-28 22:29:15,726 | INFO     | 
[2025-07-28 18:29:48] 2025-07-28 22:29:15,726 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 18:29:48] 2025-07-28 22:29:15,752 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,752 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,752 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,752 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,752 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,753 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,753 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,753 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,753 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,753 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,754 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 18:29:48] 2025-07-28 22:29:15,755 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,755 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 18:29:48] 2025-07-28 22:29:15,755 | INFO     | job 6745015216 has completed (purged errors)
[2025-07-28 18:29:48] 2025-07-28 22:29:15,755 | INFO     | overall cleanup function is called
[2025-07-28 18:29:48] 2025-07-28 22:29:16,218 | WARNING  | process 9014 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 18:29:48] 2025-07-28 22:29:16,290 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 18:29:48] 2025-07-28 22:29:16,376 | INFO     | number of running child processes to parent process 9014: 1
[2025-07-28 18:29:48] 2025-07-28 22:29:16,376 | INFO     | maximum number of monitored processes: 6
[2025-07-28 18:29:48] 2025-07-28 22:29:16,376 | INFO     | aborting job monitoring since job object (job id=6745015216) has expired
[2025-07-28 18:29:48] 2025-07-28 22:29:16,763 | INFO     | --- collectZombieJob: --- 10, [9014]
[2025-07-28 18:29:48] 2025-07-28 22:29:16,763 | INFO     | zombie collector waiting for pid 9014
[2025-07-28 18:29:48] 2025-07-28 22:29:16,763 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 18:29:48] 2025-07-28 22:29:16,763 | INFO     | collected zombie processes
[2025-07-28 18:29:48] 2025-07-28 22:29:16,763 | INFO     | will attempt to kill all subprocesses of pid=9014
[2025-07-28 18:29:48] 2025-07-28 22:29:16,847 | INFO     | process IDs to be killed: [9014] (in reverse order)
[2025-07-28 18:29:48] 2025-07-28 22:29:16,897 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 18:29:48] 2025-07-28 22:29:16,898 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 18:29:48] 2025-07-28 22:29:16,902 | INFO     | did not find any defunct processes belonging to 9014
[2025-07-28 18:29:48] 2025-07-28 22:29:16,904 | INFO     | did not find any defunct processes belonging to 9014
[2025-07-28 18:29:48] 2025-07-28 22:29:16,905 | INFO     | ready for new job
[2025-07-28 18:29:48] 2025-07-28 22:29:16,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 18:29:48] 2025-07-28 22:29:16,906 | INFO     | ***************************************
[2025-07-28 18:29:48] 2025-07-28 22:29:16,906 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 18:29:48] 2025-07-28 22:29:16,906 | INFO     | ***************************************
[2025-07-28 18:29:48] 2025-07-28 22:29:16,906 | INFO     | 
[2025-07-28 18:29:48] 2025-07-28 22:29:16,907 | INFO     | architecture information:
[2025-07-28 18:29:48] 2025-07-28 22:29:16,907 | INFO     | executing command: cat /etc/os-release
[2025-07-28 18:29:48] 2025-07-28 22:29:16,923 | INFO     | cat /etc/os-release:
[2025-07-28 18:29:48] NAME="CentOS Linux"
[2025-07-28 18:29:48] VERSION="7 (Core)"
[2025-07-28 18:29:48] ID="centos"
[2025-07-28 18:29:48] ID_LIKE="rhel fedora"
[2025-07-28 18:29:48] VERSION_ID="7"
[2025-07-28 18:29:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 18:29:48] ANSI_COLOR="0;31"
[2025-07-28 18:29:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 18:29:48] HOME_URL="https://www.centos.org/"
[2025-07-28 18:29:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 18:29:48] 
[2025-07-28 18:29:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 18:29:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 18:29:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 18:29:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 18:29:48] 
[2025-07-28 18:29:48] 2025-07-28 22:29:16,923 | INFO     | ***************************************
[2025-07-28 18:29:48] 2025-07-28 22:29:17,426 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 18:29:48] 2025-07-28 22:29:17,443 | INFO     | sufficient remaining disk space (29520560128 B)
[2025-07-28 18:29:48] 2025-07-28 22:29:17,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 18:29:48] 2025-07-28 22:29:17,444 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 18:29:48] 2025-07-28 22:29:17,444 | INFO     | update_server=False
[2025-07-28 18:29:48] 2025-07-28 22:29:17,444 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 18:29:48] 2025-07-28 22:29:17,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 18:29:48] 2025-07-28 22:29:17,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 18:29:48] 2025-07-28 22:29:17,445 | INFO     | aborting loop
[2025-07-28 18:29:48] 2025-07-28 22:29:17,740 | INFO     | all payload control threads have been joined
[2025-07-28 18:29:48] 2025-07-28 22:29:17,800 | INFO     | all job control threads have been joined
[2025-07-28 18:29:48] 2025-07-28 22:29:18,143 | INFO     | all data control threads have been joined
[2025-07-28 18:29:48] 2025-07-28 22:29:18,187 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 18:29:48] 2025-07-28 22:29:18,449 | INFO     | [job] retrieve thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:18,451 | INFO     | [job] queue monitor thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:18,451 | INFO     | [job] job monitor thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:18,486 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:18,494 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:18,745 | INFO     | [payload] control thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:18,805 | INFO     | [job] control thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:18,897 | INFO     | [data] copytool_in thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:19,148 | INFO     | [data] control thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:19,173 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:19,386 | INFO     | [payload] failed_post thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:19,670 | INFO     | [job] validate thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:19,943 | INFO     | [payload] validate_post thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:20,192 | INFO     | [data] copytool_out thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:20,805 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 18:29:48] 2025-07-28 22:29:24,811 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:27,978 | INFO     | job.realtimelogging is not enabled
[2025-07-28 18:29:48] 2025-07-28 22:29:28,983 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 18:29:48] 2025-07-28 22:29:29,980 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139638361868096)>', '<ExcThread(monitor, started 139637691504384)>']
[2025-07-28 18:29:48] 2025-07-28 22:29:34,995 | INFO     | all workflow threads have been joined
[2025-07-28 18:29:48] 2025-07-28 22:29:34,995 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 18:29:48] 2025-07-28 22:29:35,003 | INFO     | traces error code: 0
[2025-07-28 18:29:48] 2025-07-28 22:29:35,006 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 18:29:48] 2025-07-28 22:29:47,619 | INFO     | PID=2553 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 18:29:48] 2025-07-28 22:29:47,620 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 18:29:48] 2025-07-28 22:29:47,620 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 18:29:48] 2025-07-28 22:29:47,621 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 18:29:48] 2025-07-28 22:29:47,621 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 18:29:48] 2025-07-28 22:29:47,621 | INFO     | [monitor] control thread has ended
[2025-07-28 18:29:48] 2025-07-28 22:29:47,708 [wrapper] ==== pilot stdout END ====
[2025-07-28 18:29:48] 2025-07-28 22:29:47,712 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 18:29:48] 2025-07-28 22:29:47,716 [wrapper] pilotpid: 2553
[2025-07-28 18:29:48] 2025-07-28 22:29:47,719 [wrapper] Pilot exit status: 0
[2025-07-28 18:29:48] 2025-07-28 22:29:47,736 [wrapper] pandaids: 6745015216
[2025-07-28 18:29:48] 2025-07-28 22:29:47,774 [wrapper] cleanup supervisor_pilot   565 2554
[2025-07-28 18:29:48] 2025-07-28 22:29:47,778 [wrapper] Test setup, not cleaning
[2025-07-28 18:29:48] 2025-07-28 22:29:47,782 [wrapper] apfmon messages muted
[2025-07-28 18:29:48] 2025-07-28 22:29:47,786 [wrapper] ==== wrapper stdout END ====
[2025-07-28 18:29:48] 2025-07-28 22:29:47,789 [wrapper] ==== wrapper stderr END ====
[2025-07-28 18:29:48]  *** Error codes and diagnostics ***
[2025-07-28 18:29:48]     "exeErrorCode": 0,
[2025-07-28 18:29:48]     "exeErrorDiag": "",
[2025-07-28 18:29:48]     "pilotErrorCode": 0,
[2025-07-28 18:29:48]     "pilotErrorDiag": "",
[2025-07-28 18:29:48]  *** Listing of results directory ***
[2025-07-28 18:29:48] total 349784
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 06:49 pilot3.tar.gz
[2025-07-28 18:29:48] -rwx------ 1 boincer umatlas     36292 Jul 25 06:53 runpilot2-wrapper.sh
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 06:53 queuedata.json
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas       100 Jul 28 17:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 18:29:48] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 17:06 run_atlas
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas       105 Jul 28 17:06 job.xml
[2025-07-28 18:29:48] -rw-r--r-- 2 boincer umatlas 143516764 Jul 28 17:06 EVNT.45743347._001060.pool.root.1
[2025-07-28 18:29:48] drwxrwx--x 2 boincer umatlas      4096 Jul 28 17:06 shared
[2025-07-28 18:29:48] -rw-r--r-- 2 boincer umatlas    542875 Jul 28 17:06 input.tar.gz
[2025-07-28 18:29:48] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 17:06 start_atlas.sh
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas         0 Jul 28 17:06 boinc_lockfile
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas      2559 Jul 28 17:06 pandaJob.out
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas    977348 Jul 28 17:06 agis_schedconf.cvmfs.json
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas   1589827 Jul 28 17:06 agis_ddmendpoints.agis.ALL.json
[2025-07-28 18:29:48] drwx------ 4 boincer umatlas      4096 Jul 28 17:06 pilot3
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas      5868 Jul 28 18:27 init_data.xml
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas 209147533 Jul 28 18:28 HITS.45743349._020134.pool.root.1
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas      1050 Jul 28 18:29 memory_monitor_summary.json
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas       529 Jul 28 18:29 boinc_task_state.xml
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas    350256 Jul 28 18:29 log.45743349._020134.job.log.tgz.1
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas      7850 Jul 28 18:29 heartbeat.json
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 18:29 boinc_mmap_file
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas        27 Jul 28 18:29 wrapper_checkpoint.txt
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas        95 Jul 28 18:29 pilot_heartbeat.json
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas       744 Jul 28 18:29 pilotlog.txt
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas    472188 Jul 28 18:29 log.45743349._020134.job.log.1
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas       357 Jul 28 18:29 output.list
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas       620 Jul 28 18:29 runtime_log
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas    839680 Jul 28 18:29 result.tar.gz
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas       659 Jul 28 18:29 V55LDmCEVz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmuMPLDmkOBKBo.diag
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 18:29 runtime_log.err
[2025-07-28 18:29:48] -rw-r--r-- 1 boincer umatlas     21610 Jul 28 18:29 stderr.txt
[2025-07-28 18:29:48] HITS file was successfully produced:
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas 209147533 Jul 28 18:28 shared/HITS.pool.root.1
[2025-07-28 18:29:48]  *** Contents of shared directory: ***
[2025-07-28 18:29:48] total 345776
[2025-07-28 18:29:48] -rw-r--r-- 2 boincer umatlas 143516764 Jul 28 17:06 ATLAS.root_0
[2025-07-28 18:29:48] -rw-r--r-- 2 boincer umatlas    542875 Jul 28 17:06 input.tar.gz
[2025-07-28 18:29:48] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 17:06 start_atlas.sh
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas 209147533 Jul 28 18:28 HITS.pool.root.1
[2025-07-28 18:29:48] -rw------- 1 boincer umatlas    839680 Jul 28 18:29 result.tar.gz
18:29:49 (30382): run_atlas exited; CPU time 53649.029240
18:29:49 (30382): called boinc_finish(0)

</stderr_txt>
]]>

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