Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:28:08 (27664): wrapper (7.7.26015): starting
16:28:08 (27664): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 16:28:08] Arguments: --nthreads 12
[2025-07-28 16:28:08] Threads: 12
[2025-07-28 16:28:08] Checking for CVMFS
[2025-07-28 16:28:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 16:28:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 16:28:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 16:28:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 16:28:08] 2.11.2.0 2918 113922 96132 148863 2 1 14877961 20275201 1 130560 0 40128088 99.972 9712008 10649 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 16:28:08] CVMFS is ok
[2025-07-28 16:28:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 16:28:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 16:28:08] Further information can be found at the LHC@home message board.
[2025-07-28 16:28:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 16:28:08] Checking for apptainer binary...
[2025-07-28 16:28:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 16:28:08] Running /usr/bin/apptainer --version
[2025-07-28 16:28:08] apptainer version 1.3.2-1.el7
[2025-07-28 16:28:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 16:28:10] c-205-12.aglt2.org
[2025-07-28 16:28:10] apptainer works
[2025-07-28 16:28:10] Set ATHENA_PROC_NUMBER=12
[2025-07-28 16:28:10] Set ATHENA_CORE_NUMBER=12
[2025-07-28 16:28:10] Starting ATLAS job with PandaID=6745228386
[2025-07-28 16:28:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 17:52:45]  *** The last 200 lines of the pilot log: ***
[2025-07-28 17:52:45]  protocol_id=None
[2025-07-28 17:52:45]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 17:52:45]  replicas=None
[2025-07-28 17:52:45]  scope=mc23_13p6TeV
[2025-07-28 17:52:45]  status=None
[2025-07-28 17:52:45]  status_code=0
[2025-07-28 17:52:45]  storage_token=
[2025-07-28 17:52:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745228386/log.45743349._038840.job.log.tgz.1
[2025-07-28 17:52:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7b/f0/log.45743349._038840.job.log.tgz.1
[2025-07-28 17:52:45]  workdir=None
[2025-07-28 17:52:45] ]
[2025-07-28 17:52:45] 2025-07-28 21:52:02,462 | INFO     | transferring file log.45743349._038840.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745228386/log.45743349._038840.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 17:52:45] 2025-07-28 21:52:02,463 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745228386/log.45743349._038840.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._038840.job
[2025-07-28 17:52:45] 2025-07-28 21:52:02,486 | INFO     | adding to output.list: log.45743349._038840.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7b/f0/log.45743349._038840.job.log.tg
[2025-07-28 17:52:45] 2025-07-28 21:52:02,487 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 17:52:45] 2025-07-28 21:52:02,488 | INFO     | summary of transferred files:
[2025-07-28 17:52:45] 2025-07-28 21:52:02,488 | INFO     |  -- lfn=log.45743349._038840.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 17:52:45] 2025-07-28 21:52:02,488 | INFO     | stage-out finished correctly
[2025-07-28 17:52:45] 2025-07-28 21:52:03,717 | INFO     | monitor loop #377: job 0:6745228386 is in state 'finished'
[2025-07-28 17:52:45] 2025-07-28 21:52:03,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:52:45] 2025-07-28 21:52:05,396 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 17:52:45] 2025-07-28 21:52:06,250 | INFO     | monitor loop #378: job 0:6745228386 is in state 'finished'
[2025-07-28 17:52:45] 2025-07-28 21:52:06,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:52:45] 2025-07-28 21:52:07,844 | INFO     | job 6745228386 has state=finished
[2025-07-28 17:52:45] 2025-07-28 21:52:07,844 | INFO     | preparing for final server update for job 6745228386 in state='finished'
[2025-07-28 17:52:45] 2025-07-28 21:52:07,920 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 17:52:45] 2025-07-28 21:52:07,921 | INFO     | this job has now completed (state=finished)
[2025-07-28 17:52:45] 2025-07-28 21:52:07,921 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 17:52:45] 2025-07-28 21:52:07,921 | INFO     | log transfer has been attempted: DONE
[2025-07-28 17:52:45] 2025-07-28 21:52:07,921 | INFO     | job 6745228386 has finished - writing final server update
[2025-07-28 17:52:45] 2025-07-28 21:52:07,922 | INFO     | total number of processed events: 400 (read)
[2025-07-28 17:52:45] 2025-07-28 21:52:07,923 | INFO     | executing command: lscpu
[2025-07-28 17:52:45] 2025-07-28 21:52:07,950 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 17:52:45] 2025-07-28 21:52:08,754 | INFO     | monitor loop #379: job 0:6745228386 is in state 'finished'
[2025-07-28 17:52:45] 2025-07-28 21:52:08,759 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:52:45] 2025-07-28 21:52:11,262 | INFO     | monitor loop #380: job 0:6745228386 is in state 'finished'
[2025-07-28 17:52:45] 2025-07-28 21:52:11,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:52:45] 2025-07-28 21:52:12,941 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 17:52:45] 2025-07-28 21:52:12,945 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.5
[2025-07-28 17:52:45] 2025-07-28 21:52:12,948 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745228386/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 17:52:45] 2025-07-28 21:52:12,948 | INFO     | extracted standard info from prmon json
[2025-07-28 17:52:45] 2025-07-28 21:52:12,948 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 17:52:45] 2025-07-28 21:52:12,948 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 17:52:45] 2025-07-28 21:52:12,949 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 17:52:45] 2025-07-28 21:52:12,949 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 17:52:45] 2025-07-28 21:52:12,950 | INFO     | fitting pss+swap vs Time
[2025-07-28 17:52:45] 2025-07-28 21:52:12,951 | INFO     | sum of square deviations: 130793150.0
[2025-07-28 17:52:45] 2025-07-28 21:52:12,951 | INFO     | sum of deviations: -8130078109.000001
[2025-07-28 17:52:45] 2025-07-28 21:52:12,951 | INFO     | mean x: 1753737097.0
[2025-07-28 17:52:45] 2025-07-28 21:52:12,951 | INFO     | mean y: 2889169.1466666665
[2025-07-28 17:52:45] 2025-07-28 21:52:12,951 | INFO     | -- intersect: 109014864041.3851
[2025-07-28 17:52:45] 2025-07-28 21:52:12,951 | INFO     | intersect: 109014864041.3851
[2025-07-28 17:52:45] 2025-07-28 21:52:12,952 | INFO     | chi2: 0.08691046347512407
[2025-07-28 17:52:45] 2025-07-28 21:52:12,952 | INFO     | -- intersect: 109014864041.3851
[2025-07-28 17:52:45] 2025-07-28 21:52:12,952 | INFO     | current memory leak: -62.16 B/s (using 75 data points, chi2=0.09)
[2025-07-28 17:52:45] 2025-07-28 21:52:12,952 | INFO     | could have reported an average CPU frequency of 2056 MHz (6 samples)
[2025-07-28 17:52:45] 2025-07-28 21:52:12,952 | INFO     | ..............................
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . Timing measurements:
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . get job = 0 s
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . initial setup = 2 s
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . payload setup = 10 s
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . stage-in = 0 s
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . payload execution = 4987 s
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . stage-out = 0 s
[2025-07-28 17:52:45] 2025-07-28 21:52:12,953 | INFO     | . log creation = 0 s
[2025-07-28 17:52:45] 2025-07-28 21:52:12,954 | INFO     | ..............................
[2025-07-28 17:52:45] 2025-07-28 21:52:13,037 | INFO     | 
[2025-07-28 17:52:45] 2025-07-28 21:52:13,037 | INFO     | job summary report
[2025-07-28 17:52:45] 2025-07-28 21:52:13,037 | INFO     | --------------------------------------------------
[2025-07-28 17:52:45] 2025-07-28 21:52:13,037 | INFO     | PanDA job id: 6745228386
[2025-07-28 17:52:45] 2025-07-28 21:52:13,038 | INFO     | task id: 45743349
[2025-07-28 17:52:45] 2025-07-28 21:52:13,038 | INFO     | errors: (none)
[2025-07-28 17:52:45] 2025-07-28 21:52:13,038 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 17:52:45] 2025-07-28 21:52:13,038 | INFO     | pilot state: finished 
[2025-07-28 17:52:45] 2025-07-28 21:52:13,038 | INFO     | transexitcode: 0
[2025-07-28 17:52:45] 2025-07-28 21:52:13,038 | INFO     | exeerrorcode: 0
[2025-07-28 17:52:45] 2025-07-28 21:52:13,039 | INFO     | exeerrordiag: 
[2025-07-28 17:52:45] 2025-07-28 21:52:13,039 | INFO     | exitcode: 0
[2025-07-28 17:52:45] 2025-07-28 21:52:13,039 | INFO     | exitmsg: OK
[2025-07-28 17:52:45] 2025-07-28 21:52:13,039 | INFO     | cpuconsumptiontime: 53633 s
[2025-07-28 17:52:45] 2025-07-28 21:52:13,039 | INFO     | nevents: 400
[2025-07-28 17:52:45] 2025-07-28 21:52:13,039 | INFO     | neventsw: 0
[2025-07-28 17:52:45] 2025-07-28 21:52:13,040 | INFO     | pid: 5409
[2025-07-28 17:52:45] 2025-07-28 21:52:13,040 | INFO     | pgrp: 5409
[2025-07-28 17:52:45] 2025-07-28 21:52:13,040 | INFO     | corecount: 12
[2025-07-28 17:52:45] 2025-07-28 21:52:13,040 | INFO     | event service: False
[2025-07-28 17:52:45] 2025-07-28 21:52:13,040 | INFO     | sizes: {0: 2391738, 1: 2391937, 6: 2392199, 11: 2392227, 5001: 2418533, 5002: 2418532, 5003: 2427714, 5006: 2427770, 5013: 2427964}
[2025-07-28 17:52:45] 2025-07-28 21:52:13,040 | INFO     | --------------------------------------------------
[2025-07-28 17:52:45] 2025-07-28 21:52:13,041 | INFO     | 
[2025-07-28 17:52:45] 2025-07-28 21:52:13,041 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 17:52:45] 2025-07-28 21:52:13,066 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,066 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,066 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,067 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,067 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,067 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,067 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,067 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,067 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,068 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,068 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,068 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,068 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,068 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,068 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,069 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,069 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,069 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 17:52:45] 2025-07-28 21:52:13,069 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,069 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 17:52:45] 2025-07-28 21:52:13,069 | INFO     | job 6745228386 has completed (purged errors)
[2025-07-28 17:52:45] 2025-07-28 21:52:13,070 | INFO     | overall cleanup function is called
[2025-07-28 17:52:45] 2025-07-28 21:52:14,078 | INFO     | --- collectZombieJob: --- 10, [5409]
[2025-07-28 17:52:45] 2025-07-28 21:52:14,078 | INFO     | zombie collector waiting for pid 5409
[2025-07-28 17:52:45] 2025-07-28 21:52:14,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 17:52:45] 2025-07-28 21:52:14,111 | INFO     | collected zombie processes
[2025-07-28 17:52:45] 2025-07-28 21:52:14,111 | INFO     | will attempt to kill all subprocesses of pid=5409
[2025-07-28 17:52:45] 2025-07-28 21:52:14,201 | INFO     | process IDs to be killed: [5409] (in reverse order)
[2025-07-28 17:52:45] 2025-07-28 21:52:14,251 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 17:52:45] 2025-07-28 21:52:14,252 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 17:52:45] 2025-07-28 21:52:14,255 | INFO     | did not find any defunct processes belonging to 5409
[2025-07-28 17:52:45] 2025-07-28 21:52:14,258 | INFO     | did not find any defunct processes belonging to 5409
[2025-07-28 17:52:45] 2025-07-28 21:52:14,258 | INFO     | ready for new job
[2025-07-28 17:52:45] 2025-07-28 21:52:14,259 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 17:52:45] 2025-07-28 21:52:14,260 | INFO     | ***************************************
[2025-07-28 17:52:45] 2025-07-28 21:52:14,260 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 17:52:45] 2025-07-28 21:52:14,260 | INFO     | ***************************************
[2025-07-28 17:52:45] 2025-07-28 21:52:14,260 | INFO     | 
[2025-07-28 17:52:45] 2025-07-28 21:52:14,261 | INFO     | architecture information:
[2025-07-28 17:52:45] 2025-07-28 21:52:14,261 | INFO     | executing command: cat /etc/os-release
[2025-07-28 17:52:45] 2025-07-28 21:52:14,277 | INFO     | cat /etc/os-release:
[2025-07-28 17:52:45] NAME="CentOS Linux"
[2025-07-28 17:52:45] VERSION="7 (Core)"
[2025-07-28 17:52:45] ID="centos"
[2025-07-28 17:52:45] ID_LIKE="rhel fedora"
[2025-07-28 17:52:45] VERSION_ID="7"
[2025-07-28 17:52:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 17:52:45] ANSI_COLOR="0;31"
[2025-07-28 17:52:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 17:52:45] HOME_URL="https://www.centos.org/"
[2025-07-28 17:52:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 17:52:45] 
[2025-07-28 17:52:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 17:52:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 17:52:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 17:52:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 17:52:45] 
[2025-07-28 17:52:45] 2025-07-28 21:52:14,277 | INFO     | ***************************************
[2025-07-28 17:52:45] 2025-07-28 21:52:14,781 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 17:52:45] 2025-07-28 21:52:14,797 | INFO     | sufficient remaining disk space (29350690816 B)
[2025-07-28 17:52:45] 2025-07-28 21:52:14,797 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 17:52:45] 2025-07-28 21:52:14,798 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 17:52:45] 2025-07-28 21:52:14,798 | INFO     | update_server=False
[2025-07-28 17:52:45] 2025-07-28 21:52:14,798 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 17:52:45] 2025-07-28 21:52:14,798 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:52:45] 2025-07-28 21:52:14,798 | INFO     | aborting loop
[2025-07-28 17:52:45] 2025-07-28 21:52:14,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:52:45] 2025-07-28 21:52:15,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 17:52:45] 2025-07-28 21:52:15,766 | INFO     | all payload control threads have been joined
[2025-07-28 17:52:45] 2025-07-28 21:52:15,795 | INFO     | all data control threads have been joined
[2025-07-28 17:52:45] 2025-07-28 21:52:15,804 | INFO     | [job] retrieve thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:15,804 | INFO     | [job] job monitor thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:15,805 | INFO     | [job] queue monitor thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:15,833 | INFO     | all job control threads have been joined
[2025-07-28 17:52:45] 2025-07-28 21:52:15,998 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 17:52:45] 2025-07-28 21:52:16,127 | INFO     | [data] copytool_in thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:16,517 | INFO     | [payload] failed_post thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:16,692 | INFO     | [job] validate thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:16,771 | INFO     | [payload] control thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:16,800 | INFO     | [data] control thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:16,838 | INFO     | [job] control thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:16,875 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:17,086 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:17,130 | INFO     | [payload] validate_post thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:17,141 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:17,596 | INFO     | [data] copytool_out thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:20,004 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:25,330 | INFO     | job.realtimelogging is not enabled
[2025-07-28 17:52:45] 2025-07-28 21:52:26,336 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 17:52:45] 2025-07-28 21:52:26,636 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140143659505472)>', '<ExcThread(monitor, started 140143222576896)>']
[2025-07-28 17:52:45] 2025-07-28 21:52:31,656 | INFO     | all workflow threads have been joined
[2025-07-28 17:52:45] 2025-07-28 21:52:31,656 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 17:52:45] 2025-07-28 21:52:31,656 | INFO     | traces error code: 0
[2025-07-28 17:52:45] 2025-07-28 21:52:31,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 17:52:45] 2025-07-28 21:52:45,362 | INFO     | PID=31269 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 17:52:45] 2025-07-28 21:52:45,363 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 17:52:45] 2025-07-28 21:52:45,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 17:52:45] 2025-07-28 21:52:45,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 17:52:45] 2025-07-28 21:52:45,363 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 17:52:45] 2025-07-28 21:52:45,363 | INFO     | [monitor] control thread has ended
[2025-07-28 17:52:45] 2025-07-28 21:52:45,453 [wrapper] ==== pilot stdout END ====
[2025-07-28 17:52:45] 2025-07-28 21:52:45,457 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 17:52:45] 2025-07-28 21:52:45,460 [wrapper] pilotpid: 31269
[2025-07-28 17:52:45] 2025-07-28 21:52:45,464 [wrapper] Pilot exit status: 0
[2025-07-28 17:52:45] 2025-07-28 21:52:45,479 [wrapper] pandaids: 6745228386
[2025-07-28 17:52:45] 2025-07-28 21:52:45,522 [wrapper] cleanup supervisor_pilot 17614 31270
[2025-07-28 17:52:45] 2025-07-28 21:52:45,526 [wrapper] Test setup, not cleaning
[2025-07-28 17:52:45] 2025-07-28 21:52:45,530 [wrapper] apfmon messages muted
[2025-07-28 17:52:45] 2025-07-28 21:52:45,534 [wrapper] ==== wrapper stdout END ====
[2025-07-28 17:52:45] 2025-07-28 21:52:45,538 [wrapper] ==== wrapper stderr END ====
[2025-07-28 17:52:45]  *** Error codes and diagnostics ***
[2025-07-28 17:52:45]     "exeErrorCode": 0,
[2025-07-28 17:52:45]     "exeErrorDiag": "",
[2025-07-28 17:52:45]     "pilotErrorCode": 0,
[2025-07-28 17:52:45]     "pilotErrorDiag": "",
[2025-07-28 17:52:45]  *** Listing of results directory ***
[2025-07-28 17:52:45] total 433984
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas    530466 Jul 26 09:41 pilot3.tar.gz
[2025-07-28 17:52:45] -rwx------ 1 boincer umatlas     36292 Jul 26 09:49 runpilot2-wrapper.sh
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas      5112 Jul 26 09:49 queuedata.json
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas       100 Jul 28 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 17:52:45] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 16:28 run_atlas
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas       105 Jul 28 16:28 job.xml
[2025-07-28 17:52:45] -rw-r--r-- 2 boincer umatlas 227227657 Jul 28 16:28 EVNT.45743347._002216.pool.root.1
[2025-07-28 17:52:45] drwxrwx--x 2 boincer umatlas      4096 Jul 28 16:28 shared
[2025-07-28 17:52:45] -rw-r--r-- 2 boincer umatlas    542894 Jul 28 16:28 input.tar.gz
[2025-07-28 17:52:45] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 16:28 start_atlas.sh
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas         0 Jul 28 16:28 boinc_lockfile
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas      2563 Jul 28 16:28 pandaJob.out
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas    977348 Jul 28 16:28 agis_schedconf.cvmfs.json
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas   1589827 Jul 28 16:28 agis_ddmendpoints.agis.ALL.json
[2025-07-28 17:52:45] drwx------ 4 boincer umatlas      4096 Jul 28 16:28 pilot3
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas      5868 Jul 28 17:49 init_data.xml
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas 211621084 Jul 28 17:51 HITS.45743349._038840.pool.root.1
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas      1045 Jul 28 17:51 memory_monitor_summary.json
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas       530 Jul 28 17:52 boinc_task_state.xml
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas    364305 Jul 28 17:52 log.45743349._038840.job.log.tgz.1
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas      7852 Jul 28 17:52 heartbeat.json
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 17:52 boinc_mmap_file
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas        27 Jul 28 17:52 wrapper_checkpoint.txt
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas        95 Jul 28 17:52 pilot_heartbeat.json
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas       745 Jul 28 17:52 pilotlog.txt
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas    477941 Jul 28 17:52 log.45743349._038840.job.log.1
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas       357 Jul 28 17:52 output.list
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas       620 Jul 28 17:52 runtime_log
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas    860160 Jul 28 17:52 result.tar.gz
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas       659 Jul 28 17:52 AfOODmjSuz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmHSLDmARYGKn.diag
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 17:52 runtime_log.err
[2025-07-28 17:52:45] -rw-r--r-- 1 boincer umatlas     21820 Jul 28 17:52 stderr.txt
[2025-07-28 17:52:45] HITS file was successfully produced:
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas 211621084 Jul 28 17:51 shared/HITS.pool.root.1
[2025-07-28 17:52:45]  *** Contents of shared directory: ***
[2025-07-28 17:52:45] total 429960
[2025-07-28 17:52:45] -rw-r--r-- 2 boincer umatlas 227227657 Jul 28 16:28 ATLAS.root_0
[2025-07-28 17:52:45] -rw-r--r-- 2 boincer umatlas    542894 Jul 28 16:28 input.tar.gz
[2025-07-28 17:52:45] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 16:28 start_atlas.sh
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas 211621084 Jul 28 17:51 HITS.pool.root.1
[2025-07-28 17:52:45] -rw------- 1 boincer umatlas    860160 Jul 28 17:52 result.tar.gz
17:52:46 (27664): run_atlas exited; CPU time 53609.119271
17:52:46 (27664): called boinc_finish(0)

</stderr_txt>
]]>

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