Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:27:06 (3378169): wrapper (7.7.26015): starting
15:27:06 (3378169): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 15:27:06] Arguments: --nthreads 8
[2025-07-28 15:27:06] Threads: 8
[2025-07-28 15:27:06] Checking for CVMFS
[2025-07-28 15:27:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 15:27:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 15:27:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 15:27:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 15:27:06] 2.13.1.0 2816097 671 48408 148859 1 188 20375980 40960001 1017 16776704 0 66251 99.952 22232 73860 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 15:27:06] CVMFS is ok
[2025-07-28 15:27:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 15:27:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 15:27:06] Further information can be found at the LHC@home message board.
[2025-07-28 15:27:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 15:27:06] Checking for apptainer binary...
[2025-07-28 15:27:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 15:27:06] Running /usr/bin/apptainer --version
[2025-07-28 15:27:06] apptainer version 1.4.1-1.el9
[2025-07-28 15:27:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 15:27:06] c-211-10.aglt2.org
[2025-07-28 15:27:06] apptainer works
[2025-07-28 15:27:06] Set ATHENA_PROC_NUMBER=8
[2025-07-28 15:27:06] Set ATHENA_CORE_NUMBER=8
[2025-07-28 15:27:06] Starting ATLAS job with PandaID=6749052449
[2025-07-28 15:27:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 16:48:53]  *** The last 200 lines of the pilot log: ***
[2025-07-28 16:48:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-28 16:48:53]  is_altstaged=None
[2025-07-28 16:48:53]  is_tar=False
[2025-07-28 16:48:53]  lfn=log.45758961._000131.job.log.tgz.1
[2025-07-28 16:48:53]  mtime=0
[2025-07-28 16:48:53]  protocol_id=None
[2025-07-28 16:48:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 16:48:53]  replicas=None
[2025-07-28 16:48:53]  scope=mc23_13p6TeV
[2025-07-28 16:48:53]  status=None
[2025-07-28 16:48:53]  status_code=0
[2025-07-28 16:48:53]  storage_token=
[2025-07-28 16:48:53]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-6749052449/log.45758961._000131.job.log.tgz.1
[2025-07-28 16:48:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/8d/log.45758961._000131.job.log.tgz.1
[2025-07-28 16:48:53]  workdir=None
[2025-07-28 16:48:53] ]
[2025-07-28 16:48:53] 2025-07-28 20:48:17,309 | INFO     | transferring file log.45758961._000131.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-6749052449/log.45758961._000131.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 16:48:53] 2025-07-28 20:48:17,309 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-6749052449/log.45758961._000131.job.log.tgz.1 /tmp/boinchome/slots/2/log.45758961._000131.job
[2025-07-28 16:48:53] 2025-07-28 20:48:17,319 | INFO     | adding to output.list: log.45758961._000131.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ce/8d/log.45758961._000131.job.log.tg
[2025-07-28 16:48:53] 2025-07-28 20:48:17,320 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 16:48:53] 2025-07-28 20:48:17,320 | INFO     | summary of transferred files:
[2025-07-28 16:48:53] 2025-07-28 20:48:17,320 | INFO     |  -- lfn=log.45758961._000131.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 16:48:53] 2025-07-28 20:48:17,320 | INFO     | stage-out finished correctly
[2025-07-28 16:48:53] 2025-07-28 20:48:18,309 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 16:48:53] 2025-07-28 20:48:18,359 | INFO     | job 6749052449 has state=finished
[2025-07-28 16:48:53] 2025-07-28 20:48:18,359 | INFO     | preparing for final server update for job 6749052449 in state='finished'
[2025-07-28 16:48:53] 2025-07-28 20:48:18,360 | INFO     | this job has now completed (state=finished)
[2025-07-28 16:48:53] 2025-07-28 20:48:18,360 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 16:48:53] 2025-07-28 20:48:18,360 | INFO     | log transfer has been attempted: DONE
[2025-07-28 16:48:53] 2025-07-28 20:48:18,360 | INFO     | job 6749052449 has finished - writing final server update
[2025-07-28 16:48:53] 2025-07-28 20:48:18,360 | INFO     | total number of processed events: 400 (read)
[2025-07-28 16:48:53] 2025-07-28 20:48:18,361 | INFO     | executing command: lscpu
[2025-07-28 16:48:53] 2025-07-28 20:48:18,385 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 16:48:53] 2025-07-28 20:48:19,143 | INFO     | monitor loop #371: job 0:6749052449 is in state 'finished'
[2025-07-28 16:48:53] 2025-07-28 20:48:19,143 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:48:53] 2025-07-28 20:48:20,789 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 16:48:53] 2025-07-28 20:48:20,793 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 3050.2219166666673
[2025-07-28 16:48:53] 2025-07-28 20:48:20,798 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6749052449/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 16:48:53] 2025-07-28 20:48:20,799 | INFO     | extracted standard info from prmon json
[2025-07-28 16:48:53] 2025-07-28 20:48:20,799 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 16:48:53] 2025-07-28 20:48:20,799 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 16:48:53] 2025-07-28 20:48:20,799 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 16:48:53] 2025-07-28 20:48:20,799 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 16:48:53] 2025-07-28 20:48:20,800 | INFO     | fitting pss+swap vs Time
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | sum of square deviations: 120605052.0
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | sum of deviations: 713237314.9999998
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | mean x: 1753733354.0
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | mean y: 2539320.2602739725
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | -- intersect: -10368734916.518
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | intersect: -10368734916.518
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | chi2: 0.0029838077151494776
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | -- intersect: -10368734916.518
[2025-07-28 16:48:53] 2025-07-28 20:48:20,801 | INFO     | current memory leak: 5.91 B/s (using 73 data points, chi2=0.00)
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | could have reported an average CPU frequency of 2975 MHz (6 samples)
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | ..............................
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . Timing measurements:
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . get job = 0 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . initial setup = 2 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . payload setup = 3 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . stage-in = 0 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . payload execution = 4843 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . stage-out = 0 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | . log creation = 0 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,802 | INFO     | ..............................
[2025-07-28 16:48:53] 2025-07-28 20:48:20,855 | INFO     | 
[2025-07-28 16:48:53] 2025-07-28 20:48:20,855 | INFO     | job summary report
[2025-07-28 16:48:53] 2025-07-28 20:48:20,855 | INFO     | --------------------------------------------------
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | PanDA job id: 6749052449
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | task id: 45758961
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | errors: (none)
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | pilot state: finished 
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | transexitcode: 0
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | exeerrorcode: 0
[2025-07-28 16:48:53] 2025-07-28 20:48:20,856 | INFO     | exeerrordiag: 
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | exitcode: 0
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | exitmsg: OK
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | cpuconsumptiontime: 35842 s
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | nevents: 400
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | neventsw: 0
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | pid: 3400858
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | pgrp: 3400858
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | corecount: 8
[2025-07-28 16:48:53] 2025-07-28 20:48:20,857 | INFO     | event service: False
[2025-07-28 16:48:53] 2025-07-28 20:48:20,858 | INFO     | sizes: {0: 2391757, 1: 2391956, 3: 2392218, 11: 2392246, 4850: 2418523, 4851: 2427704, 4852: 2427704, 4855: 2427898}
[2025-07-28 16:48:53] 2025-07-28 20:48:20,858 | INFO     | --------------------------------------------------
[2025-07-28 16:48:53] 2025-07-28 20:48:20,858 | INFO     | 
[2025-07-28 16:48:53] 2025-07-28 20:48:20,858 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,871 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | job 6749052449 has completed (purged errors)
[2025-07-28 16:48:53] 2025-07-28 20:48:20,872 | INFO     | overall cleanup function is called
[2025-07-28 16:48:53] 2025-07-28 20:48:21,878 | INFO     | --- collectZombieJob: --- 10, [3400858]
[2025-07-28 16:48:53] 2025-07-28 20:48:21,879 | INFO     | zombie collector waiting for pid 3400858
[2025-07-28 16:48:53] 2025-07-28 20:48:21,879 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 16:48:53] 2025-07-28 20:48:21,879 | INFO     | collected zombie processes
[2025-07-28 16:48:53] 2025-07-28 20:48:21,879 | INFO     | will attempt to kill all subprocesses of pid=3400858
[2025-07-28 16:48:53] 2025-07-28 20:48:22,012 | INFO     | process IDs to be killed: [3400858] (in reverse order)
[2025-07-28 16:48:53] 2025-07-28 20:48:22,058 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 16:48:53] 2025-07-28 20:48:22,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 16:48:53] 2025-07-28 20:48:22,062 | INFO     | did not find any defunct processes belonging to 3400858
[2025-07-28 16:48:53] 2025-07-28 20:48:22,065 | INFO     | did not find any defunct processes belonging to 3400858
[2025-07-28 16:48:53] 2025-07-28 20:48:22,066 | INFO     | ready for new job
[2025-07-28 16:48:53] 2025-07-28 20:48:22,066 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 16:48:53] 2025-07-28 20:48:22,067 | INFO     | ***************************************
[2025-07-28 16:48:53] 2025-07-28 20:48:22,067 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 16:48:53] 2025-07-28 20:48:22,067 | INFO     | ***************************************
[2025-07-28 16:48:53] 2025-07-28 20:48:22,067 | INFO     | 
[2025-07-28 16:48:53] 2025-07-28 20:48:22,068 | INFO     | architecture information:
[2025-07-28 16:48:53] 2025-07-28 20:48:22,069 | INFO     | executing command: cat /etc/os-release
[2025-07-28 16:48:53] 2025-07-28 20:48:22,077 | INFO     | cat /etc/os-release:
[2025-07-28 16:48:53] NAME="CentOS Linux"
[2025-07-28 16:48:53] VERSION="7 (Core)"
[2025-07-28 16:48:53] ID="centos"
[2025-07-28 16:48:53] ID_LIKE="rhel fedora"
[2025-07-28 16:48:53] VERSION_ID="7"
[2025-07-28 16:48:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 16:48:53] ANSI_COLOR="0;31"
[2025-07-28 16:48:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 16:48:53] HOME_URL="https://www.centos.org/"
[2025-07-28 16:48:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 16:48:53] 
[2025-07-28 16:48:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 16:48:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 16:48:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 16:48:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 16:48:53] 
[2025-07-28 16:48:53] 2025-07-28 20:48:22,077 | INFO     | ***************************************
[2025-07-28 16:48:53] 2025-07-28 20:48:22,580 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-07-28 16:48:53] 2025-07-28 20:48:22,591 | INFO     | sufficient remaining disk space (64218988544 B)
[2025-07-28 16:48:53] 2025-07-28 20:48:22,591 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 16:48:53] 2025-07-28 20:48:22,592 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 16:48:53] 2025-07-28 20:48:22,592 | INFO     | update_server=False
[2025-07-28 16:48:53] 2025-07-28 20:48:22,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 16:48:53] 2025-07-28 20:48:22,592 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 16:48:53] 2025-07-28 20:48:22,598 | INFO     | all data control threads have been joined
[2025-07-28 16:48:53] 2025-07-28 20:48:22,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 16:48:53] 2025-07-28 20:48:22,651 | INFO     | aborting loop
[2025-07-28 16:48:53] 2025-07-28 20:48:22,694 | INFO     | all job control threads have been joined
[2025-07-28 16:48:53] 2025-07-28 20:48:22,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 16:48:53] 2025-07-28 20:48:22,971 | INFO     | all payload control threads have been joined
[2025-07-28 16:48:53] 2025-07-28 20:48:23,597 | INFO     | [job] retrieve thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,597 | INFO     | [job] queue monitor thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,603 | INFO     | [data] control thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,656 | INFO     | [job] job monitor thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,698 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,699 | INFO     | [job] control thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,821 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,966 | INFO     | [job] validate thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:23,976 | INFO     | [payload] control thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:24,040 | INFO     | [payload] failed_post thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:24,291 | INFO     | [payload] validate_post thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:24,365 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 16:48:53] 2025-07-28 20:48:24,593 | INFO     | [data] copytool_in thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:24,803 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:24,882 | INFO     | [data] copytool_out thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:28,371 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:33,058 | INFO     | job.realtimelogging is not enabled
[2025-07-28 16:48:53] 2025-07-28 20:48:34,063 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 16:48:53] 2025-07-28 20:48:35,993 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636879030080)>', '<ExcThread(monitor, started 140636380440320)>']
[2025-07-28 16:48:53] 2025-07-28 20:48:41,018 | INFO     | all workflow threads have been joined
[2025-07-28 16:48:53] 2025-07-28 20:48:41,018 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 16:48:53] 2025-07-28 20:48:41,019 | INFO     | traces error code: 0
[2025-07-28 16:48:53] 2025-07-28 20:48:41,019 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 16:48:53] 2025-07-28 20:48:53,074 | INFO     | PID=3383359 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 16:48:53] 2025-07-28 20:48:53,074 | INFO     | .. there are 2 such processes running
[2025-07-28 16:48:53] 2025-07-28 20:48:53,075 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 16:48:53] 2025-07-28 20:48:53,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 16:48:53] 2025-07-28 20:48:53,075 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 16:48:53] 2025-07-28 20:48:53,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 16:48:53] 2025-07-28 20:48:53,075 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 16:48:53] 2025-07-28 20:48:53,075 | INFO     | [monitor] control thread has ended
[2025-07-28 16:48:53] 2025-07-28 20:48:53,140 [wrapper] ==== pilot stdout END ====
[2025-07-28 16:48:53] 2025-07-28 20:48:53,142 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 16:48:53] 2025-07-28 20:48:53,144 [wrapper] pilotpid: 3383359
[2025-07-28 16:48:53] 2025-07-28 20:48:53,146 [wrapper] Pilot exit status: 0
[2025-07-28 16:48:53] 2025-07-28 20:48:53,152 [wrapper] pandaids: 6749052449
[2025-07-28 16:48:53] 2025-07-28 20:48:53,176 [wrapper] cleanup supervisor_pilot 3513026 3383360
[2025-07-28 16:48:53] 2025-07-28 20:48:53,178 [wrapper] Test setup, not cleaning
[2025-07-28 16:48:53] 2025-07-28 20:48:53,180 [wrapper] apfmon messages muted
[2025-07-28 16:48:53] 2025-07-28 20:48:53,182 [wrapper] ==== wrapper stdout END ====
[2025-07-28 16:48:53] 2025-07-28 20:48:53,183 [wrapper] ==== wrapper stderr END ====
[2025-07-28 16:48:53]  *** Error codes and diagnostics ***
[2025-07-28 16:48:53]     "exeErrorCode": 0,
[2025-07-28 16:48:53]     "exeErrorDiag": "",
[2025-07-28 16:48:53]     "pilotErrorCode": 0,
[2025-07-28 16:48:53]     "pilotErrorDiag": "",
[2025-07-28 16:48:53]  *** Listing of results directory ***
[2025-07-28 16:48:53] total 406780
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 14:56 pilot3.tar.gz
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 15:24 queuedata.json
[2025-07-28 16:48:53] -rwx------. 1 boincer umatlas     36292 Jul 28 15:26 runpilot2-wrapper.sh
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas       100 Jul 28 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 16:48:53] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 15:27 run_atlas
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas       105 Jul 28 15:27 job.xml
[2025-07-28 16:48:53] -rw-r--r--. 2 boincer umatlas 239172616 Jul 28 15:27 EVNT.45758956._000002.pool.root.1
[2025-07-28 16:48:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 15:27 start_atlas.sh
[2025-07-28 16:48:53] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 15:27 shared
[2025-07-28 16:48:53] -rw-r--r--. 2 boincer umatlas    542913 Jul 28 15:27 input.tar.gz
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas         0 Jul 28 15:27 boinc_lockfile
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas      2637 Jul 28 15:27 pandaJob.out
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas    977348 Jul 28 15:27 agis_schedconf.cvmfs.json
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas   1589827 Jul 28 15:27 agis_ddmendpoints.agis.ALL.json
[2025-07-28 16:48:53] drwx------. 4 boincer umatlas      4096 Jul 28 15:27 pilot3
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas      6613 Jul 28 16:38 init_data.xml
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas 171933827 Jul 28 16:47 HITS.45758961._000131.pool.root.1
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas       529 Jul 28 16:47 boinc_task_state.xml
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas        95 Jul 28 16:48 pilot_heartbeat.json
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas      1032 Jul 28 16:48 memory_monitor_summary.json
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas    295378 Jul 28 16:48 log.45758961._000131.job.log.tgz.1
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas      7801 Jul 28 16:48 heartbeat.json
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 16:48 boinc_mmap_file
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas        27 Jul 28 16:48 wrapper_checkpoint.txt
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas       892 Jul 28 16:48 pilotlog.txt
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas    485484 Jul 28 16:48 log.45758961._000131.job.log.1
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas       357 Jul 28 16:48 output.list
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas       620 Jul 28 16:48 runtime_log
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas    798720 Jul 28 16:48 result.tar.gz
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 16:48 runtime_log.err
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas       649 Jul 28 16:48 QSSLDmcfi07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNjWLDmpEEfdm.diag
[2025-07-28 16:48:53] -rw-r--r--. 1 boincer umatlas     21388 Jul 28 16:48 stderr.txt
[2025-07-28 16:48:53] HITS file was successfully produced:
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas 171933827 Jul 28 16:47 shared/HITS.pool.root.1
[2025-07-28 16:48:53]  *** Contents of shared directory: ***
[2025-07-28 16:48:53] total 402812
[2025-07-28 16:48:53] -rw-r--r--. 2 boincer umatlas 239172616 Jul 28 15:27 ATLAS.root_0
[2025-07-28 16:48:53] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 15:27 start_atlas.sh
[2025-07-28 16:48:53] -rw-r--r--. 2 boincer umatlas    542913 Jul 28 15:27 input.tar.gz
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas 171933827 Jul 28 16:47 HITS.pool.root.1
[2025-07-28 16:48:53] -rw-------. 1 boincer umatlas    798720 Jul 28 16:48 result.tar.gz
16:48:54 (3378169): run_atlas exited; CPU time 35918.475170
16:48:54 (3378169): called boinc_finish(0)

</stderr_txt>
]]>

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