Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:39:10 (3623372): wrapper (7.7.26015): starting
14:39:10 (3623372): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 14:39:10] Arguments: --nthreads 8
[2025-07-28 14:39:10] Threads: 8
[2025-07-28 14:39:10] Checking for CVMFS
[2025-07-28 14:39:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 14:39:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 14:39:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 14:39:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 14:39:10] 2.13.1.0 641173 15981 261384 148859 2 564 35767593 40960000 16367 16776704 0 55789460 99.783 61017337 38485 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 14:39:10] CVMFS is ok
[2025-07-28 14:39:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 14:39:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 14:39:10] Further information can be found at the LHC@home message board.
[2025-07-28 14:39:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 14:39:10] Checking for apptainer binary...
[2025-07-28 14:39:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 14:39:10] Running /usr/bin/apptainer --version
[2025-07-28 14:39:10] apptainer version 1.4.1-1.el9
[2025-07-28 14:39:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 14:39:10] c-212-8.aglt2.org
[2025-07-28 14:39:10] apptainer works
[2025-07-28 14:39:10] Set ATHENA_PROC_NUMBER=8
[2025-07-28 14:39:10] Set ATHENA_CORE_NUMBER=8
[2025-07-28 14:39:10] Starting ATLAS job with PandaID=6745095678
[2025-07-28 14:39:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 16:14:11]  *** The last 200 lines of the pilot log: ***
[2025-07-28 16:14:11]  lfn=log.45743349._031988.job.log.tgz.1
[2025-07-28 16:14:11]  mtime=0
[2025-07-28 16:14:11]  protocol_id=None
[2025-07-28 16:14:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 16:14:11]  replicas=None
[2025-07-28 16:14:11]  scope=mc23_13p6TeV
[2025-07-28 16:14:11]  status=None
[2025-07-28 16:14:11]  status_code=0
[2025-07-28 16:14:11]  storage_token=
[2025-07-28 16:14:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745095678/log.45743349._031988.job.log.tgz.1
[2025-07-28 16:14:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/b4/log.45743349._031988.job.log.tgz.1
[2025-07-28 16:14:11]  workdir=None
[2025-07-28 16:14:11] ]
[2025-07-28 16:14:11] 2025-07-28 20:13:34,365 | INFO     | transferring file log.45743349._031988.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745095678/log.45743349._031988.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 16:14:11] 2025-07-28 20:13:34,365 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745095678/log.45743349._031988.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._031988.job
[2025-07-28 16:14:11] 2025-07-28 20:13:34,389 | INFO     | adding to output.list: log.45743349._031988.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/43/b4/log.45743349._031988.job.log.tg
[2025-07-28 16:14:11] 2025-07-28 20:13:34,390 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 16:14:11] 2025-07-28 20:13:34,390 | INFO     | summary of transferred files:
[2025-07-28 16:14:11] 2025-07-28 20:13:34,390 | INFO     |  -- lfn=log.45743349._031988.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 16:14:11] 2025-07-28 20:13:34,390 | INFO     | stage-out finished correctly
[2025-07-28 16:14:11] 2025-07-28 20:13:34,464 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 16:14:11] 2025-07-28 20:13:34,710 | INFO     | job 6745095678 has state=finished
[2025-07-28 16:14:11] 2025-07-28 20:13:34,710 | INFO     | preparing for final server update for job 6745095678 in state='finished'
[2025-07-28 16:14:11] 2025-07-28 20:13:34,710 | INFO     | this job has now completed (state=finished)
[2025-07-28 16:14:11] 2025-07-28 20:13:34,711 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 16:14:11] 2025-07-28 20:13:34,711 | INFO     | log transfer has been attempted: DONE
[2025-07-28 16:14:11] 2025-07-28 20:13:34,711 | INFO     | job 6745095678 has finished - writing final server update
[2025-07-28 16:14:11] 2025-07-28 20:13:34,711 | INFO     | total number of processed events: 400 (read)
[2025-07-28 16:14:11] 2025-07-28 20:13:34,712 | INFO     | executing command: lscpu
[2025-07-28 16:14:11] 2025-07-28 20:13:34,777 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 16:14:11] 2025-07-28 20:13:35,988 | INFO     | monitor loop #404: job 0:6745095678 is in state 'finished'
[2025-07-28 16:14:11] 2025-07-28 20:13:35,988 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:14:11] 2025-07-28 20:13:36,627 | INFO     | PID=3635225 has CPU usage=13.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 16:14:11] 2025-07-28 20:13:36,627 | INFO     | .. there are 20 such processes running
[2025-07-28 16:14:11] 2025-07-28 20:13:38,491 | INFO     | monitor loop #405: job 0:6745095678 is in state 'finished'
[2025-07-28 16:14:11] 2025-07-28 20:13:38,492 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 16:14:11] 2025-07-28 20:13:38,800 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 16:14:11] 2025-07-28 20:13:38,805 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2958.9836770833335
[2025-07-28 16:14:11] 2025-07-28 20:13:38,819 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745095678/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 16:14:11] 2025-07-28 20:13:38,820 | INFO     | extracted standard info from prmon json
[2025-07-28 16:14:11] 2025-07-28 20:13:38,820 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 16:14:11] 2025-07-28 20:13:38,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 16:14:11] 2025-07-28 20:13:38,820 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 16:14:11] 2025-07-28 20:13:38,820 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 16:14:11] 2025-07-28 20:13:38,822 | INFO     | fitting pss+swap vs Time
[2025-07-28 16:14:11] 2025-07-28 20:13:38,822 | INFO     | sum of square deviations: 197203697.5
[2025-07-28 16:14:11] 2025-07-28 20:13:38,822 | INFO     | sum of deviations: -10570515143.5
[2025-07-28 16:14:11] 2025-07-28 20:13:38,822 | INFO     | mean x: 1753730881.5
[2025-07-28 16:14:11] 2025-07-28 20:13:38,822 | INFO     | mean y: 2648942.3139534886
[2025-07-28 16:14:11] 2025-07-28 20:13:38,822 | INFO     | -- intersect: 94006154330.54002
[2025-07-28 16:14:11] 2025-07-28 20:13:38,822 | INFO     | intersect: 94006154330.54002
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | chi2: 0.041190550575434554
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | -- intersect: 94006154330.54002
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | current memory leak: -53.60 B/s (using 86 data points, chi2=0.04)
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | could have reported an average CPU frequency of 2998 MHz (7 samples)
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | ..............................
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | . Timing measurements:
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | . get job = 0 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | . initial setup = 2 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | . payload setup = 5 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | . stage-in = 0 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,823 | INFO     | . payload execution = 5629 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,824 | INFO     | . stage-out = 0 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,824 | INFO     | . log creation = 0 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,824 | INFO     | ..............................
[2025-07-28 16:14:11] 2025-07-28 20:13:38,900 | INFO     | 
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | job summary report
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | --------------------------------------------------
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | PanDA job id: 6745095678
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | task id: 45743349
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | errors: (none)
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | pilot state: finished 
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | transexitcode: 0
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | exeerrorcode: 0
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | exeerrordiag: 
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | exitcode: 0
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | exitmsg: OK
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | cpuconsumptiontime: 39416 s
[2025-07-28 16:14:11] 2025-07-28 20:13:38,901 | INFO     | nevents: 400
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | neventsw: 0
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | pid: 3649818
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | pgrp: 3649818
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | corecount: 8
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | event service: False
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | sizes: {0: 2391738, 1: 2391937, 5: 2392199, 11: 2392255, 5638: 2419023, 5639: 2428205, 5644: 2428343}
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | --------------------------------------------------
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | 
[2025-07-28 16:14:11] 2025-07-28 20:13:38,902 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 16:14:11] 2025-07-28 20:13:38,923 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,923 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,923 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,923 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,924 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,925 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 16:14:11] 2025-07-28 20:13:38,925 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,925 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 16:14:11] 2025-07-28 20:13:38,925 | INFO     | job 6745095678 has completed (purged errors)
[2025-07-28 16:14:11] 2025-07-28 20:13:38,925 | INFO     | overall cleanup function is called
[2025-07-28 16:14:11] 2025-07-28 20:13:39,933 | INFO     | --- collectZombieJob: --- 10, [3649818]
[2025-07-28 16:14:11] 2025-07-28 20:13:39,934 | INFO     | zombie collector waiting for pid 3649818
[2025-07-28 16:14:11] 2025-07-28 20:13:39,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 16:14:11] 2025-07-28 20:13:39,934 | INFO     | collected zombie processes
[2025-07-28 16:14:11] 2025-07-28 20:13:39,934 | INFO     | will attempt to kill all subprocesses of pid=3649818
[2025-07-28 16:14:11] 2025-07-28 20:13:40,314 | INFO     | process IDs to be killed: [3649818] (in reverse order)
[2025-07-28 16:14:11] 2025-07-28 20:13:40,460 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 16:14:11] 2025-07-28 20:13:40,461 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 16:14:11] 2025-07-28 20:13:40,473 | INFO     | did not find any defunct processes belonging to 3649818
[2025-07-28 16:14:11] 2025-07-28 20:13:40,487 | INFO     | did not find any defunct processes belonging to 3649818
[2025-07-28 16:14:11] 2025-07-28 20:13:40,488 | INFO     | ready for new job
[2025-07-28 16:14:11] 2025-07-28 20:13:40,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 16:14:11] 2025-07-28 20:13:40,489 | INFO     | ***************************************
[2025-07-28 16:14:11] 2025-07-28 20:13:40,490 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 16:14:11] 2025-07-28 20:13:40,490 | INFO     | ***************************************
[2025-07-28 16:14:11] 2025-07-28 20:13:40,490 | INFO     | 
[2025-07-28 16:14:11] 2025-07-28 20:13:40,495 | INFO     | architecture information:
[2025-07-28 16:14:11] 2025-07-28 20:13:40,495 | INFO     | executing command: cat /etc/os-release
[2025-07-28 16:14:11] 2025-07-28 20:13:40,512 | INFO     | cat /etc/os-release:
[2025-07-28 16:14:11] NAME="CentOS Linux"
[2025-07-28 16:14:11] VERSION="7 (Core)"
[2025-07-28 16:14:11] ID="centos"
[2025-07-28 16:14:11] ID_LIKE="rhel fedora"
[2025-07-28 16:14:11] VERSION_ID="7"
[2025-07-28 16:14:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 16:14:11] ANSI_COLOR="0;31"
[2025-07-28 16:14:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 16:14:11] HOME_URL="https://www.centos.org/"
[2025-07-28 16:14:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 16:14:11] 
[2025-07-28 16:14:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 16:14:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 16:14:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 16:14:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 16:14:11] 
[2025-07-28 16:14:11] 2025-07-28 20:13:40,512 | INFO     | ***************************************
[2025-07-28 16:14:11] 2025-07-28 20:13:41,015 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 16:14:11] 2025-07-28 20:13:41,063 | INFO     | sufficient remaining disk space (129487601664 B)
[2025-07-28 16:14:11] 2025-07-28 20:13:41,063 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 16:14:11] 2025-07-28 20:13:41,063 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 16:14:11] 2025-07-28 20:13:41,063 | INFO     | update_server=False
[2025-07-28 16:14:11] 2025-07-28 20:13:41,063 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 16:14:11] 2025-07-28 20:13:41,064 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 16:14:11] 2025-07-28 20:13:42,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 16:14:11] 2025-07-28 20:13:42,003 | INFO     | aborting loop
[2025-07-28 16:14:11] 2025-07-28 20:13:42,026 | INFO     | all data control threads have been joined
[2025-07-28 16:14:11] 2025-07-28 20:13:42,069 | INFO     | [job] retrieve thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:42,384 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:42,476 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 16:14:11] 2025-07-28 20:13:42,503 | INFO     | all payload control threads have been joined
[2025-07-28 16:14:11] 2025-07-28 20:13:42,545 | INFO     | [payload] validate_post thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:42,577 | INFO     | all job control threads have been joined
[2025-07-28 16:14:11] 2025-07-28 20:13:42,620 | INFO     | [job] validate thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,008 | INFO     | [job] job monitor thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,031 | INFO     | [data] control thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,251 | INFO     | [data] copytool_in thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,256 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,338 | INFO     | [payload] failed_post thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,509 | INFO     | [payload] control thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,545 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,582 | INFO     | [job] control thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:43,914 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 16:14:11] 2025-07-28 20:13:44,483 | INFO     | [data] copytool_out thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:44,919 | INFO     | [job] queue monitor thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:45,071 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:52,021 | INFO     | job.realtimelogging is not enabled
[2025-07-28 16:14:11] 2025-07-28 20:13:53,025 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 16:14:11] 2025-07-28 20:13:54,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140231316367168)>', '<ExcThread(monitor, started 140230673819392)>']
[2025-07-28 16:14:11] 2025-07-28 20:13:59,838 | INFO     | all workflow threads have been joined
[2025-07-28 16:14:11] 2025-07-28 20:13:59,839 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 16:14:11] 2025-07-28 20:13:59,839 | INFO     | traces error code: 0
[2025-07-28 16:14:11] 2025-07-28 20:13:59,839 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 16:14:11] 2025-07-28 20:14:11,185 | INFO     | PID=3635225 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 16:14:11] 2025-07-28 20:14:11,185 | INFO     | .. there are 20 such processes running
[2025-07-28 16:14:11] 2025-07-28 20:14:11,186 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 16:14:11] 2025-07-28 20:14:11,186 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 16:14:11] 2025-07-28 20:14:11,186 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 16:14:11] 2025-07-28 20:14:11,186 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 16:14:11] 2025-07-28 20:14:11,186 | INFO     | [monitor] control thread has ended
[2025-07-28 16:14:11] 2025-07-28 20:14:11,357 [wrapper] ==== pilot stdout END ====
[2025-07-28 16:14:11] 2025-07-28 20:14:11,360 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 16:14:11] 2025-07-28 20:14:11,363 [wrapper] pilotpid: 3635225
[2025-07-28 16:14:11] 2025-07-28 20:14:11,366 [wrapper] Pilot exit status: 0
[2025-07-28 16:14:11] 2025-07-28 20:14:11,399 [wrapper] pandaids: 6745095678
[2025-07-28 16:14:11] 2025-07-28 20:14:11,513 [wrapper] cleanup supervisor_pilot 4003626 3635226
[2025-07-28 16:14:11] 2025-07-28 20:14:11,518 [wrapper] Test setup, not cleaning
[2025-07-28 16:14:11] 2025-07-28 20:14:11,523 [wrapper] apfmon messages muted
[2025-07-28 16:14:11] 2025-07-28 20:14:11,528 [wrapper] ==== wrapper stdout END ====
[2025-07-28 16:14:11] 2025-07-28 20:14:11,531 [wrapper] ==== wrapper stderr END ====
[2025-07-28 16:14:11]  *** Error codes and diagnostics ***
[2025-07-28 16:14:11]     "exeErrorCode": 0,
[2025-07-28 16:14:11]     "exeErrorDiag": "",
[2025-07-28 16:14:11]     "pilotErrorCode": 0,
[2025-07-28 16:14:11]     "pilotErrorDiag": "",
[2025-07-28 16:14:11]  *** Listing of results directory ***
[2025-07-28 16:14:11] total 349396
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 23:54 pilot3.tar.gz
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 00:19 queuedata.json
[2025-07-28 16:14:11] -rwx------. 1 boincer umatlas     36292 Jul 26 00:19 runpilot2-wrapper.sh
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas       100 Jul 28 14:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 16:14:11] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 14:39 run_atlas
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas       105 Jul 28 14:39 job.xml
[2025-07-28 16:14:11] -rw-r--r--. 2 boincer umatlas 146143608 Jul 28 14:39 EVNT.45743347._001795.pool.root.1
[2025-07-28 16:14:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 14:39 start_atlas.sh
[2025-07-28 16:14:11] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 14:39 shared
[2025-07-28 16:14:11] -rw-r--r--. 2 boincer umatlas    542892 Jul 28 14:39 input.tar.gz
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas         0 Jul 28 14:39 boinc_lockfile
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas      2563 Jul 28 14:39 pandaJob.out
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas    977348 Jul 28 14:39 agis_schedconf.cvmfs.json
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas   1589827 Jul 28 14:39 agis_ddmendpoints.agis.ALL.json
[2025-07-28 16:14:11] drwx------. 4 boincer umatlas      4096 Jul 28 14:39 pilot3
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas      6943 Jul 28 16:09 init_data.xml
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas 206043145 Jul 28 16:13 HITS.45743349._031988.pool.root.1
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas       529 Jul 28 16:13 boinc_task_state.xml
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas      1060 Jul 28 16:13 memory_monitor_summary.json
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas    317916 Jul 28 16:13 log.45743349._031988.job.log.tgz.1
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas      7800 Jul 28 16:13 heartbeat.json
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas        27 Jul 28 16:14 wrapper_checkpoint.txt
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 16:14 boinc_mmap_file
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas       823 Jul 28 16:14 pilotlog.txt
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas        95 Jul 28 16:14 pilot_heartbeat.json
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas    542598 Jul 28 16:14 log.45743349._031988.job.log.1
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas       357 Jul 28 16:14 output.list
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas       620 Jul 28 16:14 runtime_log
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas    880640 Jul 28 16:14 result.tar.gz
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas       656 Jul 28 16:14 tIsLDmyYlz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnCRLDmBFwiRo.diag
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 16:14 runtime_log.err
[2025-07-28 16:14:11] -rw-r--r--. 1 boincer umatlas     21717 Jul 28 16:14 stderr.txt
[2025-07-28 16:14:11] HITS file was successfully produced:
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas 206043145 Jul 28 16:13 shared/HITS.pool.root.1
[2025-07-28 16:14:11]  *** Contents of shared directory: ***
[2025-07-28 16:14:11] total 345352
[2025-07-28 16:14:11] -rw-r--r--. 2 boincer umatlas 146143608 Jul 28 14:39 ATLAS.root_0
[2025-07-28 16:14:11] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 14:39 start_atlas.sh
[2025-07-28 16:14:11] -rw-r--r--. 2 boincer umatlas    542892 Jul 28 14:39 input.tar.gz
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas 206043145 Jul 28 16:13 HITS.pool.root.1
[2025-07-28 16:14:11] -rw-------. 1 boincer umatlas    880640 Jul 28 16:14 result.tar.gz
16:14:13 (3623372): run_atlas exited; CPU time 39571.577566
16:14:13 (3623372): called boinc_finish(0)

</stderr_txt>
]]>

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