Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:22:21 (24225): wrapper (7.7.26015): starting
14:22:21 (24225): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 14:22:21] Arguments: --nthreads 12
[2025-07-28 14:22:21] Threads: 12
[2025-07-28 14:22:21] Checking for CVMFS
[2025-07-28 14:22:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 14:22:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 14:22:21] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 14:22:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 14:22:21] 2.11.2.0 2918 113796 95808 148859 3 1 14863065 20275201 1 130560 0 40042823 99.972 9706628 10645 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 14:22:21] CVMFS is ok
[2025-07-28 14:22:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 14:22:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 14:22:21] Further information can be found at the LHC@home message board.
[2025-07-28 14:22:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 14:22:21] Checking for apptainer binary...
[2025-07-28 14:22:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 14:22:21] Running /usr/bin/apptainer --version
[2025-07-28 14:22:21] apptainer version 1.3.2-1.el7
[2025-07-28 14:22:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 14:22:22] c-205-12.aglt2.org
[2025-07-28 14:22:22] apptainer works
[2025-07-28 14:22:22] Set ATHENA_PROC_NUMBER=12
[2025-07-28 14:22:22] Set ATHENA_CORE_NUMBER=12
[2025-07-28 14:22:22] Starting ATLAS job with PandaID=6749004038
[2025-07-28 14:22:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 15:57:15]  *** The last 200 lines of the pilot log: ***
[2025-07-28 15:57:15]  mtime=0
[2025-07-28 15:57:15]  protocol_id=None
[2025-07-28 15:57:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 15:57:15]  replicas=None
[2025-07-28 15:57:15]  scope=mc23_13p6TeV
[2025-07-28 15:57:15]  status=None
[2025-07-28 15:57:15]  status_code=0
[2025-07-28 15:57:15]  storage_token=
[2025-07-28 15:57:15]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6749004038/log.45803688._000023.job.log.tgz.1
[2025-07-28 15:57:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/09/log.45803688._000023.job.log.tgz.1
[2025-07-28 15:57:15]  workdir=None
[2025-07-28 15:57:15] ]
[2025-07-28 15:57:15] 2025-07-28 19:56:34,183 | INFO     | transferring file log.45803688._000023.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6749004038/log.45803688._000023.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 15:57:15] 2025-07-28 19:56:34,183 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6749004038/log.45803688._000023.job.log.tgz.1 /tmp/boinchome/slots/0/log.45803688._000023.job
[2025-07-28 15:57:15] 2025-07-28 19:56:34,206 | INFO     | adding to output.list: log.45803688._000023.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4c/09/log.45803688._000023.job.log.tg
[2025-07-28 15:57:15] 2025-07-28 19:56:34,207 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 15:57:15] 2025-07-28 19:56:34,207 | INFO     | summary of transferred files:
[2025-07-28 15:57:15] 2025-07-28 19:56:34,207 | INFO     |  -- lfn=log.45803688._000023.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 15:57:15] 2025-07-28 19:56:34,208 | INFO     | stage-out finished correctly
[2025-07-28 15:57:15] 2025-07-28 19:56:34,316 | INFO     | monitor loop #421: job 0:6749004038 is in state 'finished'
[2025-07-28 15:57:15] 2025-07-28 19:56:34,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:57:15] 2025-07-28 19:56:36,799 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 15:57:15] 2025-07-28 19:56:36,825 | INFO     | monitor loop #422: job 0:6749004038 is in state 'finished'
[2025-07-28 15:57:15] 2025-07-28 19:56:36,825 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:57:15] 2025-07-28 19:56:37,051 | INFO     | PID=27903 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 15:57:15] 2025-07-28 19:56:38,824 | INFO     | job 6749004038 has state=finished
[2025-07-28 15:57:15] 2025-07-28 19:56:38,832 | INFO     | preparing for final server update for job 6749004038 in state='finished'
[2025-07-28 15:57:15] 2025-07-28 19:56:38,832 | INFO     | this job has now completed (state=finished)
[2025-07-28 15:57:15] 2025-07-28 19:56:38,832 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 15:57:15] 2025-07-28 19:56:38,832 | INFO     | log transfer has been attempted: DONE
[2025-07-28 15:57:15] 2025-07-28 19:56:38,833 | INFO     | job 6749004038 has finished - writing final server update
[2025-07-28 15:57:15] 2025-07-28 19:56:38,833 | INFO     | total number of processed events: 400 (read)
[2025-07-28 15:57:15] 2025-07-28 19:56:38,834 | INFO     | executing command: lscpu
[2025-07-28 15:57:15] 2025-07-28 19:56:38,864 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 15:57:15] 2025-07-28 19:56:39,328 | INFO     | monitor loop #423: job 0:6749004038 is in state 'finished'
[2025-07-28 15:57:15] 2025-07-28 19:56:39,328 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:57:15] 2025-07-28 19:56:41,831 | INFO     | monitor loop #424: job 0:6749004038 is in state 'finished'
[2025-07-28 15:57:15] 2025-07-28 19:56:41,831 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 15:57:15] 2025-07-28 19:56:43,554 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 15:57:15] 2025-07-28 19:56:43,558 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1773.5
[2025-07-28 15:57:15] 2025-07-28 19:56:43,560 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749004038/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 15:57:15] 2025-07-28 19:56:43,560 | INFO     | extracted standard info from prmon json
[2025-07-28 15:57:15] 2025-07-28 19:56:43,560 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 15:57:15] 2025-07-28 19:56:43,561 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 15:57:15] 2025-07-28 19:56:43,561 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 15:57:15] 2025-07-28 19:56:43,561 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 15:57:15] 2025-07-28 19:56:43,563 | INFO     | fitting pss+swap vs Time
[2025-07-28 15:57:15] 2025-07-28 19:56:43,564 | INFO     | sum of square deviations: 190403570.0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,564 | INFO     | sum of deviations: -8280157812.0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,564 | INFO     | mean x: 1753729856.0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,564 | INFO     | mean y: 2928029.894117647
[2025-07-28 15:57:15] 2025-07-28 19:56:43,565 | INFO     | -- intersect: 76268094524.91328
[2025-07-28 15:57:15] 2025-07-28 19:56:43,565 | INFO     | intersect: 76268094524.91328
[2025-07-28 15:57:15] 2025-07-28 19:56:43,565 | INFO     | chi2: 0.13344344436365427
[2025-07-28 15:57:15] 2025-07-28 19:56:43,565 | INFO     | -- intersect: 76268094524.91328
[2025-07-28 15:57:15] 2025-07-28 19:56:43,565 | INFO     | current memory leak: -43.49 B/s (using 85 data points, chi2=0.13)
[2025-07-28 15:57:15] 2025-07-28 19:56:43,566 | INFO     | could have reported an average CPU frequency of 2109 MHz (7 samples)
[2025-07-28 15:57:15] 2025-07-28 19:56:43,566 | INFO     | ..............................
[2025-07-28 15:57:15] 2025-07-28 19:56:43,566 | INFO     | . Timing measurements:
[2025-07-28 15:57:15] 2025-07-28 19:56:43,566 | INFO     | . get job = 0 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,567 | INFO     | . initial setup = 2 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,567 | INFO     | . payload setup = 10 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,567 | INFO     | . stage-in = 0 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,567 | INFO     | . payload execution = 5606 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,567 | INFO     | . stage-out = 0 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,567 | INFO     | . log creation = 0 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,567 | INFO     | ..............................
[2025-07-28 15:57:15] 2025-07-28 19:56:43,650 | INFO     | 
[2025-07-28 15:57:15] 2025-07-28 19:56:43,651 | INFO     | job summary report
[2025-07-28 15:57:15] 2025-07-28 19:56:43,651 | INFO     | --------------------------------------------------
[2025-07-28 15:57:15] 2025-07-28 19:56:43,651 | INFO     | PanDA job id: 6749004038
[2025-07-28 15:57:15] 2025-07-28 19:56:43,651 | INFO     | task id: 45803688
[2025-07-28 15:57:15] 2025-07-28 19:56:43,651 | INFO     | errors: (none)
[2025-07-28 15:57:15] 2025-07-28 19:56:43,651 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 15:57:15] 2025-07-28 19:56:43,652 | INFO     | pilot state: finished 
[2025-07-28 15:57:15] 2025-07-28 19:56:43,652 | INFO     | transexitcode: 0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,652 | INFO     | exeerrorcode: 0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,652 | INFO     | exeerrordiag: 
[2025-07-28 15:57:15] 2025-07-28 19:56:43,652 | INFO     | exitcode: 0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,652 | INFO     | exitmsg: OK
[2025-07-28 15:57:15] 2025-07-28 19:56:43,653 | INFO     | cpuconsumptiontime: 62029 s
[2025-07-28 15:57:15] 2025-07-28 19:56:43,653 | INFO     | nevents: 400
[2025-07-28 15:57:15] 2025-07-28 19:56:43,653 | INFO     | neventsw: 0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,653 | INFO     | pid: 2003
[2025-07-28 15:57:15] 2025-07-28 19:56:43,653 | INFO     | pgrp: 2003
[2025-07-28 15:57:15] 2025-07-28 19:56:43,653 | INFO     | corecount: 12
[2025-07-28 15:57:15] 2025-07-28 19:56:43,653 | INFO     | event service: False
[2025-07-28 15:57:15] 2025-07-28 19:56:43,654 | INFO     | sizes: {0: 2391597, 1: 2391852, 6: 2392114, 12: 2392142, 5620: 2418712, 5621: 2427710, 5624: 2427894, 5631: 2428088}
[2025-07-28 15:57:15] 2025-07-28 19:56:43,654 | INFO     | --------------------------------------------------
[2025-07-28 15:57:15] 2025-07-28 19:56:43,654 | INFO     | 
[2025-07-28 15:57:15] 2025-07-28 19:56:43,654 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 15:57:15] 2025-07-28 19:56:43,675 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,675 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,676 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,676 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,676 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,676 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,676 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,676 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,677 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,677 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,677 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,677 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,677 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,677 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,677 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,678 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,678 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,678 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 15:57:15] 2025-07-28 19:56:43,678 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,678 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 15:57:15] 2025-07-28 19:56:43,678 | INFO     | job 6749004038 has completed (purged errors)
[2025-07-28 15:57:15] 2025-07-28 19:56:43,679 | INFO     | overall cleanup function is called
[2025-07-28 15:57:15] 2025-07-28 19:56:44,686 | INFO     | --- collectZombieJob: --- 10, [2003]
[2025-07-28 15:57:15] 2025-07-28 19:56:44,687 | INFO     | zombie collector waiting for pid 2003
[2025-07-28 15:57:15] 2025-07-28 19:56:44,687 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 15:57:15] 2025-07-28 19:56:44,687 | INFO     | collected zombie processes
[2025-07-28 15:57:15] 2025-07-28 19:56:44,687 | INFO     | will attempt to kill all subprocesses of pid=2003
[2025-07-28 15:57:15] 2025-07-28 19:56:44,786 | INFO     | process IDs to be killed: [2003] (in reverse order)
[2025-07-28 15:57:15] 2025-07-28 19:56:44,837 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 15:57:15] 2025-07-28 19:56:44,838 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 15:57:15] 2025-07-28 19:56:44,841 | INFO     | did not find any defunct processes belonging to 2003
[2025-07-28 15:57:15] 2025-07-28 19:56:44,845 | INFO     | did not find any defunct processes belonging to 2003
[2025-07-28 15:57:15] 2025-07-28 19:56:44,845 | INFO     | ready for new job
[2025-07-28 15:57:15] 2025-07-28 19:56:44,845 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 15:57:15] 2025-07-28 19:56:44,847 | INFO     | ***************************************
[2025-07-28 15:57:15] 2025-07-28 19:56:44,847 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 15:57:15] 2025-07-28 19:56:44,847 | INFO     | ***************************************
[2025-07-28 15:57:15] 2025-07-28 19:56:44,847 | INFO     | 
[2025-07-28 15:57:15] 2025-07-28 19:56:44,848 | INFO     | architecture information:
[2025-07-28 15:57:15] 2025-07-28 19:56:44,848 | INFO     | executing command: cat /etc/os-release
[2025-07-28 15:57:15] 2025-07-28 19:56:44,864 | INFO     | cat /etc/os-release:
[2025-07-28 15:57:15] NAME="CentOS Linux"
[2025-07-28 15:57:15] VERSION="7 (Core)"
[2025-07-28 15:57:15] ID="centos"
[2025-07-28 15:57:15] ID_LIKE="rhel fedora"
[2025-07-28 15:57:15] VERSION_ID="7"
[2025-07-28 15:57:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 15:57:15] ANSI_COLOR="0;31"
[2025-07-28 15:57:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 15:57:15] HOME_URL="https://www.centos.org/"
[2025-07-28 15:57:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 15:57:15] 
[2025-07-28 15:57:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 15:57:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 15:57:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 15:57:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 15:57:15] 
[2025-07-28 15:57:15] 2025-07-28 19:56:44,865 | INFO     | ***************************************
[2025-07-28 15:57:15] 2025-07-28 19:56:45,368 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 15:57:15] 2025-07-28 19:56:45,385 | INFO     | sufficient remaining disk space (29262610432 B)
[2025-07-28 15:57:15] 2025-07-28 19:56:45,385 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 15:57:15] 2025-07-28 19:56:45,385 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 15:57:15] 2025-07-28 19:56:45,386 | INFO     | update_server=False
[2025-07-28 15:57:15] 2025-07-28 19:56:45,386 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 15:57:15] 2025-07-28 19:56:45,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 15:57:15] 2025-07-28 19:56:45,386 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:57:15] 2025-07-28 19:56:45,387 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 15:57:15] 2025-07-28 19:56:45,387 | INFO     | aborting loop
[2025-07-28 15:57:15] 2025-07-28 19:56:45,622 | INFO     | all data control threads have been joined
[2025-07-28 15:57:15] 2025-07-28 19:56:46,270 | INFO     | all job control threads have been joined
[2025-07-28 15:57:15] 2025-07-28 19:56:46,375 | INFO     | all payload control threads have been joined
[2025-07-28 15:57:15] 2025-07-28 19:56:46,391 | INFO     | [job] retrieve thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:46,392 | INFO     | [job] queue monitor thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:46,393 | INFO     | [job] job monitor thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:46,496 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:46,564 | INFO     | [data] copytool_in thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:46,624 | INFO     | [data] control thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:46,860 | INFO     | [payload] validate_post thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,276 | INFO     | [job] control thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,354 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,375 | INFO     | [job] validate thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,381 | INFO     | [payload] control thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,391 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 15:57:15] 2025-07-28 19:56:47,392 | INFO     | [data] copytool_out thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,479 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,506 | INFO     | [payload] failed_post thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:47,866 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:51,394 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 15:57:15] 2025-07-28 19:56:51,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140357167642432)>', '<ExcThread(monitor, started 140356435830528)>']
[2025-07-28 15:57:15] 2025-07-28 19:56:56,499 | INFO     | all workflow threads have been joined
[2025-07-28 15:57:15] 2025-07-28 19:56:56,499 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 15:57:15] 2025-07-28 19:56:56,508 | INFO     | traces error code: 0
[2025-07-28 15:57:15] 2025-07-28 19:56:56,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 15:57:15] 2025-07-28 19:57:15,258 | INFO     | PID=27903 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 15:57:15] 2025-07-28 19:57:15,259 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 15:57:15] 2025-07-28 19:57:15,259 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 15:57:15] 2025-07-28 19:57:15,259 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 15:57:15] 2025-07-28 19:57:15,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 15:57:15] 2025-07-28 19:57:15,260 | INFO     | [monitor] control thread has ended
[2025-07-28 15:57:15] 2025-07-28 19:57:15,344 [wrapper] ==== pilot stdout END ====
[2025-07-28 15:57:15] 2025-07-28 19:57:15,348 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 15:57:15] 2025-07-28 19:57:15,351 [wrapper] pilotpid: 27903
[2025-07-28 15:57:15] 2025-07-28 19:57:15,355 [wrapper] Pilot exit status: 0
[2025-07-28 15:57:15] 2025-07-28 19:57:15,370 [wrapper] pandaids: 6749004038
[2025-07-28 15:57:15] 2025-07-28 19:57:15,409 [wrapper] cleanup supervisor_pilot 29552 27904
[2025-07-28 15:57:15] 2025-07-28 19:57:15,413 [wrapper] Test setup, not cleaning
[2025-07-28 15:57:15] 2025-07-28 19:57:15,417 [wrapper] apfmon messages muted
[2025-07-28 15:57:15] 2025-07-28 19:57:15,421 [wrapper] ==== wrapper stdout END ====
[2025-07-28 15:57:15] 2025-07-28 19:57:15,425 [wrapper] ==== wrapper stderr END ====
[2025-07-28 15:57:15]  *** Error codes and diagnostics ***
[2025-07-28 15:57:15]     "exeErrorCode": 0,
[2025-07-28 15:57:15]     "exeErrorDiag": "",
[2025-07-28 15:57:15]     "pilotErrorCode": 0,
[2025-07-28 15:57:15]     "pilotErrorDiag": "",
[2025-07-28 15:57:15]  *** Listing of results directory ***
[2025-07-28 15:57:15] total 480600
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 14:01 pilot3.tar.gz
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 14:20 queuedata.json
[2025-07-28 15:57:15] -rwx------ 1 boincer umatlas     36292 Jul 28 14:20 runpilot2-wrapper.sh
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas       100 Jul 28 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 15:57:15] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 14:22 run_atlas
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas       105 Jul 28 14:22 job.xml
[2025-07-28 15:57:15] -rw-r--r-- 2 boincer umatlas 267474560 Jul 28 14:22 EVNT.45803686._000001.pool.root.1
[2025-07-28 15:57:15] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 14:22 start_atlas.sh
[2025-07-28 15:57:15] drwxrwx--x 2 boincer umatlas      4096 Jul 28 14:22 shared
[2025-07-28 15:57:15] -rw-r--r-- 2 boincer umatlas    542865 Jul 28 14:22 input.tar.gz
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas         0 Jul 28 14:22 boinc_lockfile
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas      2506 Jul 28 14:22 pandaJob.out
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas    977348 Jul 28 14:22 agis_schedconf.cvmfs.json
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas   1589827 Jul 28 14:22 agis_ddmendpoints.agis.ALL.json
[2025-07-28 15:57:15] drwx------ 4 boincer umatlas      4096 Jul 28 14:22 pilot3
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas 218963105 Jul 28 15:56 HITS.45803688._000023.pool.root.1
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas       529 Jul 28 15:56 boinc_task_state.xml
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas      5868 Jul 28 15:56 init_data.xml
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas      1059 Jul 28 15:56 memory_monitor_summary.json
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas    384159 Jul 28 15:56 log.45803688._000023.job.log.tgz.1
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 15:56 boinc_mmap_file
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas        27 Jul 28 15:56 wrapper_checkpoint.txt
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas      7838 Jul 28 15:56 heartbeat.json
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas        95 Jul 28 15:57 pilot_heartbeat.json
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas       745 Jul 28 15:57 pilotlog.txt
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas    530077 Jul 28 15:57 log.45803688._000023.job.log.1
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas       357 Jul 28 15:57 output.list
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas       620 Jul 28 15:57 runtime_log
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas    931840 Jul 28 15:57 result.tar.gz
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 15:57 runtime_log.err
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas       659 Jul 28 15:57 p81LDmwdh07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmaiWLDmArCNZm.diag
[2025-07-28 15:57:15] -rw-r--r-- 1 boincer umatlas     21838 Jul 28 15:57 stderr.txt
[2025-07-28 15:57:15] HITS file was successfully produced:
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas 218963105 Jul 28 15:56 shared/HITS.pool.root.1
[2025-07-28 15:57:15]  *** Contents of shared directory: ***
[2025-07-28 15:57:15] total 476504
[2025-07-28 15:57:15] -rw-r--r-- 2 boincer umatlas 267474560 Jul 28 14:22 ATLAS.root_0
[2025-07-28 15:57:15] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 14:22 start_atlas.sh
[2025-07-28 15:57:15] -rw-r--r-- 2 boincer umatlas    542865 Jul 28 14:22 input.tar.gz
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas 218963105 Jul 28 15:56 HITS.pool.root.1
[2025-07-28 15:57:15] -rw------- 1 boincer umatlas    931840 Jul 28 15:57 result.tar.gz
15:57:17 (24225): run_atlas exited; CPU time 61993.400558
15:57:17 (24225): called boinc_finish(0)

</stderr_txt>
]]>

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