Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:21:08 (7866): wrapper (7.7.26015): starting
14:21:08 (7866): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 14:21:08] Arguments: --nthreads 12
[2025-07-28 14:21:08] Threads: 12
[2025-07-28 14:21:08] Checking for CVMFS
[2025-07-28 14:21:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 14:21:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 14:21:08] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 14:21:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 14:21:08] 2.11.2.0 2924 113748 101276 148859 0 1 15315354 20275201 1 130560 0 40709143 99.972 10321006 11319 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 14:21:08] CVMFS is ok
[2025-07-28 14:21:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 14:21:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 14:21:08] Further information can be found at the LHC@home message board.
[2025-07-28 14:21:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 14:21:08] Checking for apptainer binary...
[2025-07-28 14:21:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 14:21:08] Running /usr/bin/apptainer --version
[2025-07-28 14:21:08] apptainer version 1.3.2-1.el7
[2025-07-28 14:21:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 14:21:10] c-205-28.aglt2.org
[2025-07-28 14:21:10] apptainer works
[2025-07-28 14:21:10] Set ATHENA_PROC_NUMBER=12
[2025-07-28 14:21:10] Set ATHENA_CORE_NUMBER=12
[2025-07-28 14:21:10] Starting ATLAS job with PandaID=6749004054
[2025-07-28 14:21:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:28:26 (24579): wrapper (7.7.26015): starting
15:28:26 (24579): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 15:28:26] Arguments: --nthreads 12
[2025-07-28 15:28:26] Threads: 12
[2025-07-28 15:28:26] This job has been restarted, cleaning up previous attempt
[2025-07-28 15:28:26] Checking for CVMFS
[2025-07-28 15:28:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 15:28:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 15:28:26] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 15:28:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 15:28:27] 2.11.2.0 2924 113816 99156 148859 1 188 15322234 20275201 1 130560 0 40777494 99.972 10322479 11320 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 15:28:27] CVMFS is ok
[2025-07-28 15:28:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 15:28:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 15:28:27] Further information can be found at the LHC@home message board.
[2025-07-28 15:28:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 15:28:27] Checking for apptainer binary...
[2025-07-28 15:28:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 15:28:27] Running /usr/bin/apptainer --version
[2025-07-28 15:28:27] apptainer version 1.3.2-1.el7
[2025-07-28 15:28:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 15:28:28] c-205-28.aglt2.org
[2025-07-28 15:28:28] apptainer works
[2025-07-28 15:28:28] Set ATHENA_PROC_NUMBER=12
[2025-07-28 15:28:28] Set ATHENA_CORE_NUMBER=12
[2025-07-28 15:28:28] Starting ATLAS job with PandaID=6749004054
[2025-07-28 15:28:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 17:05:40]  *** The last 200 lines of the pilot log: ***
[2025-07-28 17:05:40]  mtime=0
[2025-07-28 17:05:40]  protocol_id=None
[2025-07-28 17:05:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 17:05:40]  replicas=None
[2025-07-28 17:05:40]  scope=mc23_13p6TeV
[2025-07-28 17:05:40]  status=None
[2025-07-28 17:05:40]  status_code=0
[2025-07-28 17:05:40]  storage_token=
[2025-07-28 17:05:40]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6749004054/log.45803688._000039.job.log.tgz.1
[2025-07-28 17:05:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/3e/log.45803688._000039.job.log.tgz.1
[2025-07-28 17:05:40]  workdir=None
[2025-07-28 17:05:40] ]
[2025-07-28 17:05:40] 2025-07-28 21:05:01,429 | INFO     | transferring file log.45803688._000039.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6749004054/log.45803688._000039.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 17:05:40] 2025-07-28 21:05:01,429 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6749004054/log.45803688._000039.job.log.tgz.1 /tmp/boinchome/slots/0/log.45803688._000039.job
[2025-07-28 17:05:40] 2025-07-28 21:05:01,452 | INFO     | adding to output.list: log.45803688._000039.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1d/3e/log.45803688._000039.job.log.tg
[2025-07-28 17:05:40] 2025-07-28 21:05:01,453 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 17:05:40] 2025-07-28 21:05:01,453 | INFO     | summary of transferred files:
[2025-07-28 17:05:40] 2025-07-28 21:05:01,454 | INFO     |  -- lfn=log.45803688._000039.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 17:05:40] 2025-07-28 21:05:01,454 | INFO     | stage-out finished correctly
[2025-07-28 17:05:40] 2025-07-28 21:05:01,540 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 17:05:40] 2025-07-28 21:05:02,573 | WARNING  | process 2735 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 17:05:40] 2025-07-28 21:05:02,573 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749004054/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 17:05:40] 2025-07-28 21:05:02,661 | INFO     | number of running child processes to parent process 2735: 1
[2025-07-28 17:05:40] 2025-07-28 21:05:02,661 | INFO     | maximum number of monitored processes: 6
[2025-07-28 17:05:40] 2025-07-28 21:05:03,717 | INFO     | job 6749004054 has state=finished
[2025-07-28 17:05:40] 2025-07-28 21:05:03,717 | INFO     | preparing for final server update for job 6749004054 in state='finished'
[2025-07-28 17:05:40] 2025-07-28 21:05:03,718 | INFO     | this job has now completed (state=finished)
[2025-07-28 17:05:40] 2025-07-28 21:05:03,718 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 17:05:40] 2025-07-28 21:05:03,718 | INFO     | log transfer has been attempted: DONE
[2025-07-28 17:05:40] 2025-07-28 21:05:03,718 | INFO     | job 6749004054 has finished - writing final server update
[2025-07-28 17:05:40] 2025-07-28 21:05:03,718 | INFO     | total number of processed events: 400 (read)
[2025-07-28 17:05:40] 2025-07-28 21:05:03,719 | INFO     | executing command: lscpu
[2025-07-28 17:05:40] 2025-07-28 21:05:03,746 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 17:05:40] 2025-07-28 21:05:05,164 | INFO     | monitor loop #432: job 0:6749004054 is in state 'finished'
[2025-07-28 17:05:40] 2025-07-28 21:05:05,165 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:05:40] 2025-07-28 21:05:07,668 | INFO     | monitor loop #433: job 0:6749004054 is in state 'finished'
[2025-07-28 17:05:40] 2025-07-28 21:05:07,668 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 17:05:40] 2025-07-28 21:05:08,482 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 17:05:40] 2025-07-28 21:05:08,485 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1751.1666666666667
[2025-07-28 17:05:40] 2025-07-28 21:05:08,488 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6749004054/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 17:05:40] 2025-07-28 21:05:08,488 | INFO     | extracted standard info from prmon json
[2025-07-28 17:05:40] 2025-07-28 21:05:08,489 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 17:05:40] 2025-07-28 21:05:08,489 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 17:05:40] 2025-07-28 21:05:08,489 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 17:05:40] 2025-07-28 21:05:08,489 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 17:05:40] 2025-07-28 21:05:08,492 | INFO     | fitting pss+swap vs Time
[2025-07-28 17:05:40] 2025-07-28 21:05:08,492 | INFO     | sum of square deviations: 211285822.0
[2025-07-28 17:05:40] 2025-07-28 21:05:08,493 | INFO     | sum of deviations: 4067926886.0
[2025-07-28 17:05:40] 2025-07-28 21:05:08,493 | INFO     | mean x: 1753733911.5
[2025-07-28 17:05:40] 2025-07-28 21:05:08,493 | INFO     | mean y: 2705872.6818181816
[2025-07-28 17:05:40] 2025-07-28 21:05:08,493 | INFO     | -- intersect: -33762273064.148098
[2025-07-28 17:05:40] 2025-07-28 21:05:08,493 | INFO     | intersect: -33762273064.148098
[2025-07-28 17:05:40] 2025-07-28 21:05:08,494 | INFO     | chi2: 0.0453557486097947
[2025-07-28 17:05:40] 2025-07-28 21:05:08,494 | INFO     | -- intersect: -33762273064.148098
[2025-07-28 17:05:40] 2025-07-28 21:05:08,494 | INFO     | current memory leak: 19.25 B/s (using 88 data points, chi2=0.05)
[2025-07-28 17:05:40] 2025-07-28 21:05:08,494 | INFO     | could have reported an average CPU frequency of 2131 MHz (7 samples)
[2025-07-28 17:05:40] 2025-07-28 21:05:08,494 | INFO     | ..............................
[2025-07-28 17:05:40] 2025-07-28 21:05:08,494 | INFO     | . Timing measurements:
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | . get job = 0 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | . initial setup = 1 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | . payload setup = 9 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | . stage-in = 0 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | . payload execution = 5749 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | . stage-out = 0 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | . log creation = 0 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,495 | INFO     | ..............................
[2025-07-28 17:05:40] 2025-07-28 21:05:08,580 | INFO     | 
[2025-07-28 17:05:40] 2025-07-28 21:05:08,580 | INFO     | job summary report
[2025-07-28 17:05:40] 2025-07-28 21:05:08,580 | INFO     | --------------------------------------------------
[2025-07-28 17:05:40] 2025-07-28 21:05:08,580 | INFO     | PanDA job id: 6749004054
[2025-07-28 17:05:40] 2025-07-28 21:05:08,580 | INFO     | task id: 45803688
[2025-07-28 17:05:40] 2025-07-28 21:05:08,580 | INFO     | errors: (none)
[2025-07-28 17:05:40] 2025-07-28 21:05:08,580 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | pilot state: finished 
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | transexitcode: 0
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | exeerrorcode: 0
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | exeerrordiag: 
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | exitcode: 0
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | exitmsg: OK
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | cpuconsumptiontime: 62257 s
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | nevents: 400
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | neventsw: 0
[2025-07-28 17:05:40] 2025-07-28 21:05:08,581 | INFO     | pid: 2735
[2025-07-28 17:05:40] 2025-07-28 21:05:08,582 | INFO     | pgrp: 2735
[2025-07-28 17:05:40] 2025-07-28 21:05:08,582 | INFO     | corecount: 12
[2025-07-28 17:05:40] 2025-07-28 21:05:08,582 | INFO     | event service: False
[2025-07-28 17:05:40] 2025-07-28 21:05:08,582 | INFO     | sizes: {0: 2391826, 5: 2392088, 11: 2392144, 5762: 2418771, 5764: 2427825, 5771: 2427963}
[2025-07-28 17:05:40] 2025-07-28 21:05:08,582 | INFO     | --------------------------------------------------
[2025-07-28 17:05:40] 2025-07-28 21:05:08,582 | INFO     | 
[2025-07-28 17:05:40] 2025-07-28 21:05:08,583 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 17:05:40] 2025-07-28 21:05:08,608 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,608 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,609 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,609 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,609 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,609 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,611 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,611 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,611 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,611 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,611 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,611 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 17:05:40] 2025-07-28 21:05:08,612 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,612 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 17:05:40] 2025-07-28 21:05:08,612 | INFO     | job 6749004054 has completed (purged errors)
[2025-07-28 17:05:40] 2025-07-28 21:05:08,612 | INFO     | overall cleanup function is called
[2025-07-28 17:05:40] 2025-07-28 21:05:09,620 | INFO     | --- collectZombieJob: --- 10, [2735]
[2025-07-28 17:05:40] 2025-07-28 21:05:09,620 | INFO     | zombie collector waiting for pid 2735
[2025-07-28 17:05:40] 2025-07-28 21:05:09,620 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 17:05:40] 2025-07-28 21:05:09,620 | INFO     | collected zombie processes
[2025-07-28 17:05:40] 2025-07-28 21:05:09,620 | INFO     | will attempt to kill all subprocesses of pid=2735
[2025-07-28 17:05:40] 2025-07-28 21:05:09,719 | INFO     | process IDs to be killed: [2735] (in reverse order)
[2025-07-28 17:05:40] 2025-07-28 21:05:09,771 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 17:05:40] 2025-07-28 21:05:09,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 17:05:40] 2025-07-28 21:05:09,775 | INFO     | did not find any defunct processes belonging to 2735
[2025-07-28 17:05:40] 2025-07-28 21:05:09,778 | INFO     | did not find any defunct processes belonging to 2735
[2025-07-28 17:05:40] 2025-07-28 21:05:09,778 | INFO     | ready for new job
[2025-07-28 17:05:40] 2025-07-28 21:05:09,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 17:05:40] 2025-07-28 21:05:09,780 | INFO     | ***************************************
[2025-07-28 17:05:40] 2025-07-28 21:05:09,780 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 17:05:40] 2025-07-28 21:05:09,780 | INFO     | ***************************************
[2025-07-28 17:05:40] 2025-07-28 21:05:09,780 | INFO     | 
[2025-07-28 17:05:40] 2025-07-28 21:05:09,781 | INFO     | architecture information:
[2025-07-28 17:05:40] 2025-07-28 21:05:09,781 | INFO     | executing command: cat /etc/os-release
[2025-07-28 17:05:40] 2025-07-28 21:05:09,795 | INFO     | cat /etc/os-release:
[2025-07-28 17:05:40] NAME="CentOS Linux"
[2025-07-28 17:05:40] VERSION="7 (Core)"
[2025-07-28 17:05:40] ID="centos"
[2025-07-28 17:05:40] ID_LIKE="rhel fedora"
[2025-07-28 17:05:40] VERSION_ID="7"
[2025-07-28 17:05:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 17:05:40] ANSI_COLOR="0;31"
[2025-07-28 17:05:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 17:05:40] HOME_URL="https://www.centos.org/"
[2025-07-28 17:05:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 17:05:40] 
[2025-07-28 17:05:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 17:05:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 17:05:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 17:05:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 17:05:40] 
[2025-07-28 17:05:40] 2025-07-28 21:05:09,796 | INFO     | ***************************************
[2025-07-28 17:05:40] 2025-07-28 21:05:10,298 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 17:05:40] 2025-07-28 21:05:10,316 | INFO     | sufficient remaining disk space (29256318976 B)
[2025-07-28 17:05:40] 2025-07-28 21:05:10,316 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 17:05:40] 2025-07-28 21:05:10,316 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 17:05:40] 2025-07-28 21:05:10,316 | INFO     | update_server=False
[2025-07-28 17:05:40] 2025-07-28 21:05:10,316 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 17:05:40] 2025-07-28 21:05:10,317 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:05:40] 2025-07-28 21:05:10,317 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 17:05:40] 2025-07-28 21:05:10,617 | INFO     | all data control threads have been joined
[2025-07-28 17:05:40] 2025-07-28 21:05:11,031 | INFO     | all job control threads have been joined
[2025-07-28 17:05:40] 2025-07-28 21:05:11,136 | INFO     | all payload control threads have been joined
[2025-07-28 17:05:40] 2025-07-28 21:05:11,176 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 17:05:40] 2025-07-28 21:05:11,176 | INFO     | aborting loop
[2025-07-28 17:05:40] 2025-07-28 21:05:11,322 | INFO     | [job] queue monitor thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:11,322 | INFO     | [job] retrieve thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:11,456 | INFO     | [job] validate thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:11,545 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:11,623 | INFO     | [data] control thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:11,686 | INFO     | [payload] failed_post thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:11,900 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:12,037 | INFO     | [job] control thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:12,139 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 17:05:40] 2025-07-28 21:05:12,141 | INFO     | [payload] control thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:12,182 | INFO     | [job] job monitor thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:12,323 | INFO     | [data] copytool_out thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:12,330 | INFO     | [payload] validate_post thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:12,402 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:12,808 | INFO     | [data] copytool_in thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:16,144 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:20,639 | INFO     | job.realtimelogging is not enabled
[2025-07-28 17:05:40] 2025-07-28 21:05:21,644 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 17:05:40] 2025-07-28 21:05:23,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155907348288)>', '<ExcThread(monitor, started 140154513651456)>']
[2025-07-28 17:05:40] 2025-07-28 21:05:28,728 | INFO     | all workflow threads have been joined
[2025-07-28 17:05:40] 2025-07-28 21:05:28,728 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 17:05:40] 2025-07-28 21:05:28,728 | INFO     | traces error code: 0
[2025-07-28 17:05:40] 2025-07-28 21:05:28,728 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 17:05:40] 2025-07-28 21:05:40,653 | INFO     | PID=28561 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 17:05:40] 2025-07-28 21:05:40,654 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 17:05:40] 2025-07-28 21:05:40,654 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 17:05:40] 2025-07-28 21:05:40,654 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 17:05:40] 2025-07-28 21:05:40,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 17:05:40] 2025-07-28 21:05:40,654 | INFO     | [monitor] control thread has ended
[2025-07-28 17:05:40] 2025-07-28 21:05:40,750 [wrapper] ==== pilot stdout END ====
[2025-07-28 17:05:40] 2025-07-28 21:05:40,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 17:05:40] 2025-07-28 21:05:40,757 [wrapper] pilotpid: 28561
[2025-07-28 17:05:40] 2025-07-28 21:05:40,760 [wrapper] Pilot exit status: 0
[2025-07-28 17:05:40] 2025-07-28 21:05:40,776 [wrapper] pandaids: 6749004054 6749004054
[2025-07-28 17:05:40] 2025-07-28 21:05:40,816 [wrapper] cleanup supervisor_pilot 21391 28562
[2025-07-28 17:05:40] 2025-07-28 21:05:40,820 [wrapper] Test setup, not cleaning
[2025-07-28 17:05:40] 2025-07-28 21:05:40,824 [wrapper] apfmon messages muted
[2025-07-28 17:05:40] 2025-07-28 21:05:40,828 [wrapper] ==== wrapper stdout END ====
[2025-07-28 17:05:40] 2025-07-28 21:05:40,832 [wrapper] ==== wrapper stderr END ====
[2025-07-28 17:05:40]  *** Error codes and diagnostics ***
[2025-07-28 17:05:40]     "exeErrorCode": 0,
[2025-07-28 17:05:40]     "exeErrorDiag": "",
[2025-07-28 17:05:40]     "pilotErrorCode": 0,
[2025-07-28 17:05:40]     "pilotErrorDiag": "",
[2025-07-28 17:05:40]  *** Listing of results directory ***
[2025-07-28 17:05:40] total 748528
[2025-07-28 17:05:40] drwx------ 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 14:01 pilot3.tar.gz
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 14:20 queuedata.json
[2025-07-28 17:05:40] -rwx------ 1 boincer umatlas     36292 Jul 28 14:20 runpilot2-wrapper.sh
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas       100 Jul 28 14:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 17:05:40] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 14:21 run_atlas
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas       105 Jul 28 14:21 job.xml
[2025-07-28 17:05:40] -rw-r--r-- 3 boincer umatlas 273006244 Jul 28 14:21 EVNT.45803686._000002.pool.root.1
[2025-07-28 17:05:40] -rw-r--r-- 3 boincer umatlas 273006244 Jul 28 14:21 ATLAS.root_0
[2025-07-28 17:05:40] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 14:21 start_atlas.sh
[2025-07-28 17:05:40] drwxrwx--x 2 boincer umatlas      4096 Jul 28 14:21 shared
[2025-07-28 17:05:40] -rw-r--r-- 2 boincer umatlas    542874 Jul 28 14:21 input.tar.gz
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas         0 Jul 28 14:21 boinc_lockfile
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas   1589827 Jul 28 14:21 agis_ddmendpoints.agis.ALL.json
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas      2507 Jul 28 15:28 pandaJob.out
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas    977348 Jul 28 15:28 agis_schedconf.cvmfs.json
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas      5868 Jul 28 17:00 init_data.xml
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas       531 Jul 28 17:04 boinc_task_state.xml
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas 214778787 Jul 28 17:04 HITS.45803688._000039.pool.root.1
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas        96 Jul 28 17:04 pilot_heartbeat.json
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas      1047 Jul 28 17:04 memory_monitor_summary.json
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas    375862 Jul 28 17:05 log.45803688._000039.job.log.tgz.1
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas      7835 Jul 28 17:05 heartbeat.json
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 17:05 boinc_mmap_file
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas        28 Jul 28 17:05 wrapper_checkpoint.txt
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas       745 Jul 28 17:05 pilotlog.txt
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas    541149 Jul 28 17:05 log.45803688._000039.job.log.1
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas       357 Jul 28 17:05 output.list
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas       620 Jul 28 17:05 runtime_log
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas    931840 Jul 28 17:05 result.tar.gz
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas      8747 Jul 28 17:05 runtime_log.err
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas       784 Jul 28 17:05 CILMDmbdh07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmigWLDmTNQYVm.diag
[2025-07-28 17:05:40] -rw-r--r-- 1 boincer umatlas     23856 Jul 28 17:05 stderr.txt
[2025-07-28 17:05:40] HITS file was successfully produced:
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas 214778787 Jul 28 17:04 shared/HITS.pool.root.1
[2025-07-28 17:05:40]  *** Contents of shared directory: ***
[2025-07-28 17:05:40] total 477820
[2025-07-28 17:05:40] -rw-r--r-- 3 boincer umatlas 273006244 Jul 28 14:21 ATLAS.root_0
[2025-07-28 17:05:40] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 14:21 start_atlas.sh
[2025-07-28 17:05:40] -rw-r--r-- 2 boincer umatlas    542874 Jul 28 14:21 input.tar.gz
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas 214778787 Jul 28 17:04 HITS.pool.root.1
[2025-07-28 17:05:40] -rw------- 1 boincer umatlas    931840 Jul 28 17:05 result.tar.gz
17:05:42 (24579): run_atlas exited; CPU time 62221.311157
17:05:42 (24579): called boinc_finish(0)

</stderr_txt>
]]>

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