Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:00:48 (3202303): wrapper (7.7.26015): starting
14:00:48 (3202303): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 14:00:48] Arguments: --nthreads 8
[2025-07-28 14:00:48] Threads: 8
[2025-07-28 14:00:48] Checking for CVMFS
[2025-07-28 14:00:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 14:00:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 14:00:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 14:00:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 14:00:48] 2.13.1.0 3121180 106 34656 148857 1 1 35853643 40960001 0 16776704 0 38 95.000 2598 70216 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 14:00:48] CVMFS is ok
[2025-07-28 14:00:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 14:00:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 14:00:48] Further information can be found at the LHC@home message board.
[2025-07-28 14:00:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 14:00:48] Checking for apptainer binary...
[2025-07-28 14:00:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 14:00:48] Running /usr/bin/apptainer --version
[2025-07-28 14:00:48] apptainer version 1.4.1-1.el9
[2025-07-28 14:00:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 14:00:48] c-212-1.aglt2.org
[2025-07-28 14:00:48] apptainer works
[2025-07-28 14:00:48] Set ATHENA_PROC_NUMBER=8
[2025-07-28 14:00:48] Set ATHENA_CORE_NUMBER=8
[2025-07-28 14:00:48] Starting ATLAS job with PandaID=6746329863
[2025-07-28 14:00:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 14:53:10]  *** The last 200 lines of the pilot log: ***
[2025-07-28 14:53:10]  status_code=0
[2025-07-28 14:53:10]  storage_token=
[2025-07-28 14:53:10]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6746329863/log.45758416._000095.job.log.tgz.1
[2025-07-28 14:53:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/bd/log.45758416._000095.job.log.tgz.1
[2025-07-28 14:53:10]  workdir=None
[2025-07-28 14:53:10] ]
[2025-07-28 14:53:10] 2025-07-28 18:52:28,150 | INFO     | transferring file log.45758416._000095.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6746329863/log.45758416._000095.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 14:53:10] 2025-07-28 18:52:28,151 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6746329863/log.45758416._000095.job.log.tgz.1 /tmp/boinchome/slots/0/log.45758416._000095.job
[2025-07-28 14:53:10] 2025-07-28 18:52:28,162 | INFO     | adding to output.list: log.45758416._000095.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/cd/bd/log.45758416._000095.job.log.tg
[2025-07-28 14:53:10] 2025-07-28 18:52:28,162 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 14:53:10] 2025-07-28 18:52:28,162 | INFO     | summary of transferred files:
[2025-07-28 14:53:10] 2025-07-28 18:52:28,162 | INFO     |  -- lfn=log.45758416._000095.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 14:53:10] 2025-07-28 18:52:28,162 | INFO     | stage-out finished correctly
[2025-07-28 14:53:10] 2025-07-28 18:52:29,348 | WARNING  | process 3212702 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 14:53:10] 2025-07-28 18:52:29,349 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746329863/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 14:53:10] 2025-07-28 18:52:29,493 | INFO     | number of running child processes to parent process 3212702: 1
[2025-07-28 14:53:10] 2025-07-28 18:52:29,493 | INFO     | maximum number of monitored processes: 6
[2025-07-28 14:53:10] 2025-07-28 18:52:31,417 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 14:53:10] 2025-07-28 18:52:31,996 | INFO     | monitor loop #236: job 0:6746329863 is in state 'finished'
[2025-07-28 14:53:10] 2025-07-28 18:52:31,996 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 14:53:10] 2025-07-28 18:52:34,129 | INFO     | PID=3206050 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 14:53:10] 2025-07-28 18:52:34,386 | INFO     | job 6746329863 has state=finished
[2025-07-28 14:53:10] 2025-07-28 18:52:34,386 | INFO     | preparing for final server update for job 6746329863 in state='finished'
[2025-07-28 14:53:10] 2025-07-28 18:52:34,447 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 14:53:10] 2025-07-28 18:52:34,447 | INFO     | this job has now completed (state=finished)
[2025-07-28 14:53:10] 2025-07-28 18:52:34,447 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 14:53:10] 2025-07-28 18:52:34,447 | INFO     | log transfer has been attempted: DONE
[2025-07-28 14:53:10] 2025-07-28 18:52:34,447 | INFO     | job 6746329863 has finished - writing final server update
[2025-07-28 14:53:10] 2025-07-28 18:52:34,447 | INFO     | total number of processed events: 400 (read)
[2025-07-28 14:53:10] 2025-07-28 18:52:34,447 | INFO     | executing command: lscpu
[2025-07-28 14:53:10] 2025-07-28 18:52:34,484 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 14:53:10] 2025-07-28 18:52:34,499 | INFO     | monitor loop #237: job 0:6746329863 is in state 'finished'
[2025-07-28 14:53:10] 2025-07-28 18:52:34,500 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,002 | INFO     | monitor loop #238: job 0:6746329863 is in state 'finished'
[2025-07-28 14:53:10] 2025-07-28 18:52:37,003 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,197 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 14:53:10] 2025-07-28 18:52:37,200 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2780.889114583337
[2025-07-28 14:53:10] 2025-07-28 18:52:37,208 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6746329863/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,209 | INFO     | extracted standard info from prmon json
[2025-07-28 14:53:10] 2025-07-28 18:52:37,209 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 14:53:10] 2025-07-28 18:52:37,209 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 14:53:10] 2025-07-28 18:52:37,209 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 14:53:10] 2025-07-28 18:52:37,209 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 14:53:10] 2025-07-28 18:52:37,210 | INFO     | fitting pss+swap vs Time
[2025-07-28 14:53:10] 2025-07-28 18:52:37,210 | INFO     | sum of square deviations: 26400495.0
[2025-07-28 14:53:10] 2025-07-28 18:52:37,210 | INFO     | sum of deviations: 521548078.50000006
[2025-07-28 14:53:10] 2025-07-28 18:52:37,210 | INFO     | mean x: 1753727293.5
[2025-07-28 14:53:10] 2025-07-28 18:52:37,210 | INFO     | mean y: 2574059.977272727
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | -- intersect: -34642727103.426315
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | intersect: -34642727103.426315
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | chi2: 0.00034468032003758084
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | -- intersect: -34642727103.426315
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | current memory leak: 19.76 B/s (using 44 data points, chi2=0.00)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | could have reported an average CPU frequency of 2815 MHz (5 samples)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | ..............................
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . Timing measurements:
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . get job = 0 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . initial setup = 2 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . payload setup = 4 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . stage-in = 0 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . payload execution = 3069 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . stage-out = 0 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | . log creation = 0 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,211 | INFO     | ..............................
[2025-07-28 14:53:10] 2025-07-28 18:52:37,421 | INFO     | 
[2025-07-28 14:53:10] 2025-07-28 18:52:37,421 | INFO     | job summary report
[2025-07-28 14:53:10] 2025-07-28 18:52:37,421 | INFO     | --------------------------------------------------
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | PanDA job id: 6746329863
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | task id: 45758416
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | errors: (none)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | pilot state: finished 
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | transexitcode: 0
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | exeerrorcode: 0
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | exeerrordiag: 
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | exitcode: 0
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | exitmsg: OK
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | cpuconsumptiontime: 22571 s
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | nevents: 400
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | neventsw: 0
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | pid: 3212702
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | pgrp: 3212702
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | corecount: 8
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | event service: False
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | sizes: {0: 2391903, 3: 2392165, 11: 2392193, 3076: 2417623, 3077: 2417622, 3078: 2426676, 3081: 2426860, 3087: 2427086}
[2025-07-28 14:53:10] 2025-07-28 18:52:37,422 | INFO     | --------------------------------------------------
[2025-07-28 14:53:10] 2025-07-28 18:52:37,423 | INFO     | 
[2025-07-28 14:53:10] 2025-07-28 18:52:37,423 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,435 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | job 6746329863 has completed (purged errors)
[2025-07-28 14:53:10] 2025-07-28 18:52:37,436 | INFO     | overall cleanup function is called
[2025-07-28 14:53:10] 2025-07-28 18:52:38,443 | INFO     | --- collectZombieJob: --- 10, [3212702]
[2025-07-28 14:53:10] 2025-07-28 18:52:38,443 | INFO     | zombie collector waiting for pid 3212702
[2025-07-28 14:53:10] 2025-07-28 18:52:38,444 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 14:53:10] 2025-07-28 18:52:38,444 | INFO     | collected zombie processes
[2025-07-28 14:53:10] 2025-07-28 18:52:38,444 | INFO     | will attempt to kill all subprocesses of pid=3212702
[2025-07-28 14:53:10] 2025-07-28 18:52:38,610 | INFO     | process IDs to be killed: [3212702] (in reverse order)
[2025-07-28 14:53:10] 2025-07-28 18:52:38,666 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 14:53:10] 2025-07-28 18:52:38,666 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 14:53:10] 2025-07-28 18:52:38,671 | INFO     | did not find any defunct processes belonging to 3212702
[2025-07-28 14:53:10] 2025-07-28 18:52:38,676 | INFO     | did not find any defunct processes belonging to 3212702
[2025-07-28 14:53:10] 2025-07-28 18:52:38,676 | INFO     | ready for new job
[2025-07-28 14:53:10] 2025-07-28 18:52:38,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 14:53:10] 2025-07-28 18:52:38,677 | INFO     | ***************************************
[2025-07-28 14:53:10] 2025-07-28 18:52:38,677 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 14:53:10] 2025-07-28 18:52:38,677 | INFO     | ***************************************
[2025-07-28 14:53:10] 2025-07-28 18:52:38,677 | INFO     | 
[2025-07-28 14:53:10] 2025-07-28 18:52:38,680 | INFO     | architecture information:
[2025-07-28 14:53:10] 2025-07-28 18:52:38,680 | INFO     | executing command: cat /etc/os-release
[2025-07-28 14:53:10] 2025-07-28 18:52:38,689 | INFO     | cat /etc/os-release:
[2025-07-28 14:53:10] NAME="CentOS Linux"
[2025-07-28 14:53:10] VERSION="7 (Core)"
[2025-07-28 14:53:10] ID="centos"
[2025-07-28 14:53:10] ID_LIKE="rhel fedora"
[2025-07-28 14:53:10] VERSION_ID="7"
[2025-07-28 14:53:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 14:53:10] ANSI_COLOR="0;31"
[2025-07-28 14:53:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 14:53:10] HOME_URL="https://www.centos.org/"
[2025-07-28 14:53:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 14:53:10] 
[2025-07-28 14:53:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 14:53:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 14:53:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 14:53:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 14:53:10] 
[2025-07-28 14:53:10] 2025-07-28 18:52:38,689 | INFO     | ***************************************
[2025-07-28 14:53:10] 2025-07-28 18:52:39,192 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 14:53:10] 2025-07-28 18:52:39,201 | INFO     | sufficient remaining disk space (129840971776 B)
[2025-07-28 14:53:10] 2025-07-28 18:52:39,201 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 14:53:10] 2025-07-28 18:52:39,201 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 14:53:10] 2025-07-28 18:52:39,201 | INFO     | update_server=False
[2025-07-28 14:53:10] 2025-07-28 18:52:39,201 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 14:53:10] 2025-07-28 18:52:39,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 14:53:10] 2025-07-28 18:52:39,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 14:53:10] 2025-07-28 18:52:39,378 | INFO     | all payload control threads have been joined
[2025-07-28 14:53:10] 2025-07-28 18:52:39,505 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 14:53:10] 2025-07-28 18:52:39,506 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 14:53:10] 2025-07-28 18:52:39,506 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 14:53:10] 2025-07-28 18:52:39,506 | INFO     | will abort loop
[2025-07-28 14:53:10] 2025-07-28 18:52:39,607 | INFO     | all data control threads have been joined
[2025-07-28 14:53:10] 2025-07-28 18:52:39,659 | INFO     | all job control threads have been joined
[2025-07-28 14:53:10] 2025-07-28 18:52:40,207 | INFO     | [job] retrieve thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:40,207 | INFO     | [job] queue monitor thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:40,380 | INFO     | [payload] control thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:40,511 | INFO     | [job] job monitor thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:40,612 | INFO     | [data] control thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:40,637 | INFO     | [payload] validate_post thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:40,665 | INFO     | [job] control thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,098 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,207 | INFO     | [data] copytool_out thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,474 | INFO     | [job] validate thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,475 | INFO     | [data] copytool_in thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,554 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,617 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,739 | INFO     | [payload] failed_post thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:41,961 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 14:53:10] 2025-07-28 18:52:45,967 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:49,423 | INFO     | job.realtimelogging is not enabled
[2025-07-28 14:53:10] 2025-07-28 18:52:50,428 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 14:53:10] 2025-07-28 18:52:52,137 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885968090944)>', '<ExcThread(monitor, started 139885694392064)>']
[2025-07-28 14:53:10] 2025-07-28 18:52:57,162 | INFO     | all workflow threads have been joined
[2025-07-28 14:53:10] 2025-07-28 18:52:57,163 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 14:53:10] 2025-07-28 18:52:57,163 | INFO     | traces error code: 0
[2025-07-28 14:53:10] 2025-07-28 18:52:57,163 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 14:53:10] 2025-07-28 18:53:10,408 | INFO     | PID=3206050 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 14:53:10] 2025-07-28 18:53:10,408 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 14:53:10] 2025-07-28 18:53:10,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 14:53:10] 2025-07-28 18:53:10,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 14:53:10] 2025-07-28 18:53:10,408 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 14:53:10] 2025-07-28 18:53:10,408 | INFO     | [monitor] control thread has ended
[2025-07-28 14:53:10] 2025-07-28 18:53:10,467 [wrapper] ==== pilot stdout END ====
[2025-07-28 14:53:10] 2025-07-28 18:53:10,470 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 14:53:10] 2025-07-28 18:53:10,472 [wrapper] pilotpid: 3206050
[2025-07-28 14:53:10] 2025-07-28 18:53:10,474 [wrapper] Pilot exit status: 0
[2025-07-28 14:53:10] 2025-07-28 18:53:10,483 [wrapper] pandaids: 6746329863
[2025-07-28 14:53:10] 2025-07-28 18:53:10,517 [wrapper] cleanup supervisor_pilot 3258036 3206051
[2025-07-28 14:53:10] 2025-07-28 18:53:10,519 [wrapper] Test setup, not cleaning
[2025-07-28 14:53:10] 2025-07-28 18:53:10,521 [wrapper] apfmon messages muted
[2025-07-28 14:53:10] 2025-07-28 18:53:10,523 [wrapper] ==== wrapper stdout END ====
[2025-07-28 14:53:10] 2025-07-28 18:53:10,525 [wrapper] ==== wrapper stderr END ====
[2025-07-28 14:53:10]  *** Error codes and diagnostics ***
[2025-07-28 14:53:10]     "exeErrorCode": 0,
[2025-07-28 14:53:10]     "exeErrorDiag": "",
[2025-07-28 14:53:10]     "pilotErrorCode": 0,
[2025-07-28 14:53:10]     "pilotErrorDiag": "",
[2025-07-28 14:53:10]  *** Listing of results directory ***
[2025-07-28 14:53:10] total 403300
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 02:49 pilot3.tar.gz
[2025-07-28 14:53:10] -rwx------. 1 boincer umatlas     36292 Jul 27 03:06 runpilot2-wrapper.sh
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 03:06 queuedata.json
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas       100 Jul 28 14:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 14:53:10] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 14:00 run_atlas
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas       105 Jul 28 14:00 job.xml
[2025-07-28 14:53:10] -rw-r--r--. 2 boincer umatlas 238159143 Jul 28 14:00 EVNT.45758414._000004.pool.root.1
[2025-07-28 14:53:10] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 14:00 start_atlas.sh
[2025-07-28 14:53:10] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 14:00 shared
[2025-07-28 14:53:10] -rw-r--r--. 2 boincer umatlas    542888 Jul 28 14:00 input.tar.gz
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas         0 Jul 28 14:00 boinc_lockfile
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 14:00 pandaJob.out
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas    977348 Jul 28 14:00 agis_schedconf.cvmfs.json
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas   1589827 Jul 28 14:00 agis_ddmendpoints.agis.ALL.json
[2025-07-28 14:53:10] drwx------. 4 boincer umatlas      4096 Jul 28 14:00 pilot3
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas      6947 Jul 28 14:47 init_data.xml
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas 169721532 Jul 28 14:52 HITS.45758416._000095.pool.root.1
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas       529 Jul 28 14:52 boinc_task_state.xml
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas      1016 Jul 28 14:52 memory_monitor_summary.json
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas    295715 Jul 28 14:52 log.45758416._000095.job.log.tgz.1
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas        95 Jul 28 14:52 pilot_heartbeat.json
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas      7737 Jul 28 14:52 heartbeat.json
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 14:52 boinc_mmap_file
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas        27 Jul 28 14:52 wrapper_checkpoint.txt
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas       747 Jul 28 14:53 pilotlog.txt
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas    317674 Jul 28 14:53 log.45758416._000095.job.log.1
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas       357 Jul 28 14:53 output.list
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas       620 Jul 28 14:53 runtime_log
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas    634880 Jul 28 14:53 result.tar.gz
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas       650 Jul 28 14:53 U2JNDmydA07n9Rq4apOajLDm4fhM0noT9bVof3QYDmD81KDm2Tx6ym.diag
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 14:53 runtime_log.err
[2025-07-28 14:53:10] -rw-r--r--. 1 boincer umatlas     22259 Jul 28 14:53 stderr.txt
[2025-07-28 14:53:10] HITS file was successfully produced:
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas 169721532 Jul 28 14:52 shared/HITS.pool.root.1
[2025-07-28 14:53:10]  *** Contents of shared directory: ***
[2025-07-28 14:53:10] total 399496
[2025-07-28 14:53:10] -rw-r--r--. 2 boincer umatlas 238159143 Jul 28 14:00 ATLAS.root_0
[2025-07-28 14:53:10] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 14:00 start_atlas.sh
[2025-07-28 14:53:10] -rw-r--r--. 2 boincer umatlas    542888 Jul 28 14:00 input.tar.gz
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas 169721532 Jul 28 14:52 HITS.pool.root.1
[2025-07-28 14:53:10] -rw-------. 1 boincer umatlas    634880 Jul 28 14:53 result.tar.gz
14:53:11 (3202303): run_atlas exited; CPU time 22590.293212
14:53:11 (3202303): called boinc_finish(0)

</stderr_txt>
]]>

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