Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
13:01:06 (26373): wrapper (7.7.26015): starting
13:01:06 (26373): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 13:01:06] Arguments: --nthreads 12
[2025-07-28 13:01:06] Threads: 12
[2025-07-28 13:01:06] Checking for CVMFS
[2025-07-28 13:01:06] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 13:01:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 13:01:06] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 13:01:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 13:01:06] 2.11.2.0 2913 113715 96084 148856 1 59 15597013 20275200 1 130560 0 39930080 99.972 9870770 10868 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 13:01:06] CVMFS is ok
[2025-07-28 13:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 13:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 13:01:06] Further information can be found at the LHC@home message board.
[2025-07-28 13:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 13:01:06] Checking for apptainer binary...
[2025-07-28 13:01:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 13:01:06] Running /usr/bin/apptainer --version
[2025-07-28 13:01:06] apptainer version 1.3.2-1.el7
[2025-07-28 13:01:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 13:01:08] c-205-6.aglt2.org
[2025-07-28 13:01:08] apptainer works
[2025-07-28 13:01:08] Set ATHENA_PROC_NUMBER=12
[2025-07-28 13:01:08] Set ATHENA_CORE_NUMBER=12
[2025-07-28 13:01:08] Starting ATLAS job with PandaID=6748947303
[2025-07-28 13:01:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 14:22:14]  *** The last 200 lines of the pilot log: ***
[2025-07-28 14:22:14]  mtime=0
[2025-07-28 14:22:14]  protocol_id=None
[2025-07-28 14:22:14]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 14:22:14]  replicas=None
[2025-07-28 14:22:14]  scope=mc23_13p6TeV
[2025-07-28 14:22:14]  status=None
[2025-07-28 14:22:14]  status_code=0
[2025-07-28 14:22:14]  storage_token=
[2025-07-28 14:22:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748947303/log.45743349._056487.job.log.tgz.1
[2025-07-28 14:22:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/88/log.45743349._056487.job.log.tgz.1
[2025-07-28 14:22:14]  workdir=None
[2025-07-28 14:22:14] ]
[2025-07-28 14:22:14] 2025-07-28 18:21:33,650 | INFO     | transferring file log.45743349._056487.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748947303/log.45743349._056487.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 14:22:14] 2025-07-28 18:21:33,650 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748947303/log.45743349._056487.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056487.job
[2025-07-28 14:22:14] 2025-07-28 18:21:33,673 | INFO     | adding to output.list: log.45743349._056487.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/91/88/log.45743349._056487.job.log.tg
[2025-07-28 14:22:14] 2025-07-28 18:21:33,674 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 14:22:14] 2025-07-28 18:21:33,674 | INFO     | summary of transferred files:
[2025-07-28 14:22:14] 2025-07-28 18:21:33,674 | INFO     |  -- lfn=log.45743349._056487.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 14:22:14] 2025-07-28 18:21:33,675 | INFO     | stage-out finished correctly
[2025-07-28 14:22:14] 2025-07-28 18:21:35,626 | WARNING  | process 4348 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 14:22:14] 2025-07-28 18:21:35,626 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748947303/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 14:22:14] 2025-07-28 18:21:35,715 | INFO     | number of running child processes to parent process 4348: 1
[2025-07-28 14:22:14] 2025-07-28 18:21:35,716 | INFO     | maximum number of monitored processes: 6
[2025-07-28 14:22:14] 2025-07-28 18:21:35,923 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 14:22:14] 2025-07-28 18:21:36,126 | INFO     | PID=29980 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 14:22:14] 2025-07-28 18:21:36,956 | INFO     | job 6748947303 has state=finished
[2025-07-28 14:22:14] 2025-07-28 18:21:36,957 | INFO     | preparing for final server update for job 6748947303 in state='finished'
[2025-07-28 14:22:14] 2025-07-28 18:21:36,958 | INFO     | this job has now completed (state=finished)
[2025-07-28 14:22:14] 2025-07-28 18:21:36,958 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 14:22:14] 2025-07-28 18:21:36,958 | INFO     | log transfer has been attempted: DONE
[2025-07-28 14:22:14] 2025-07-28 18:21:36,959 | INFO     | job 6748947303 has finished - writing final server update
[2025-07-28 14:22:14] 2025-07-28 18:21:36,959 | INFO     | total number of processed events: 400 (read)
[2025-07-28 14:22:14] 2025-07-28 18:21:36,960 | INFO     | executing command: lscpu
[2025-07-28 14:22:14] 2025-07-28 18:21:36,987 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 14:22:14] 2025-07-28 18:21:38,219 | INFO     | monitor loop #360: job 0:6748947303 is in state 'finished'
[2025-07-28 14:22:14] 2025-07-28 18:21:38,219 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 14:22:14] 2025-07-28 18:21:40,732 | INFO     | monitor loop #361: job 0:6748947303 is in state 'finished'
[2025-07-28 14:22:14] 2025-07-28 18:21:40,733 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 14:22:14] 2025-07-28 18:21:41,624 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 14:22:14] 2025-07-28 18:21:41,629 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-28 14:22:14] 2025-07-28 18:21:41,631 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748947303/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 14:22:14] 2025-07-28 18:21:41,632 | INFO     | extracted standard info from prmon json
[2025-07-28 14:22:14] 2025-07-28 18:21:41,632 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 14:22:14] 2025-07-28 18:21:41,632 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 14:22:14] 2025-07-28 18:21:41,633 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 14:22:14] 2025-07-28 18:21:41,633 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 14:22:14] 2025-07-28 18:21:41,635 | INFO     | fitting pss+swap vs Time
[2025-07-28 14:22:14] 2025-07-28 18:21:41,636 | INFO     | sum of square deviations: 115715658.0
[2025-07-28 14:22:14] 2025-07-28 18:21:41,636 | INFO     | sum of deviations: -1920871090.0000005
[2025-07-28 14:22:14] 2025-07-28 18:21:41,636 | INFO     | mean x: 1753724582.5
[2025-07-28 14:22:14] 2025-07-28 18:21:41,636 | INFO     | mean y: 2699417.722222222
[2025-07-28 14:22:14] 2025-07-28 18:21:41,637 | INFO     | -- intersect: 29114393622.032677
[2025-07-28 14:22:14] 2025-07-28 18:21:41,637 | INFO     | intersect: 29114393622.032677
[2025-07-28 14:22:14] 2025-07-28 18:21:41,637 | INFO     | chi2: 0.05594341101034069
[2025-07-28 14:22:14] 2025-07-28 18:21:41,637 | INFO     | -- intersect: 29114393622.032677
[2025-07-28 14:22:14] 2025-07-28 18:21:41,637 | INFO     | current memory leak: -16.60 B/s (using 72 data points, chi2=0.06)
[2025-07-28 14:22:14] 2025-07-28 18:21:41,638 | INFO     | could have reported an average CPU frequency of 2043 MHz (6 samples)
[2025-07-28 14:22:14] 2025-07-28 18:21:41,638 | INFO     | ..............................
[2025-07-28 14:22:14] 2025-07-28 18:21:41,638 | INFO     | . Timing measurements:
[2025-07-28 14:22:14] 2025-07-28 18:21:41,638 | INFO     | . get job = 0 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,638 | INFO     | . initial setup = 2 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,638 | INFO     | . payload setup = 9 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,639 | INFO     | . stage-in = 0 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,639 | INFO     | . payload execution = 4781 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,639 | INFO     | . stage-out = 0 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,639 | INFO     | . log creation = 0 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,639 | INFO     | ..............................
[2025-07-28 14:22:14] 2025-07-28 18:21:41,728 | INFO     | 
[2025-07-28 14:22:14] 2025-07-28 18:21:41,728 | INFO     | job summary report
[2025-07-28 14:22:14] 2025-07-28 18:21:41,728 | INFO     | --------------------------------------------------
[2025-07-28 14:22:14] 2025-07-28 18:21:41,728 | INFO     | PanDA job id: 6748947303
[2025-07-28 14:22:14] 2025-07-28 18:21:41,728 | INFO     | task id: 45743349
[2025-07-28 14:22:14] 2025-07-28 18:21:41,728 | INFO     | errors: (none)
[2025-07-28 14:22:14] 2025-07-28 18:21:41,729 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 14:22:14] 2025-07-28 18:21:41,729 | INFO     | pilot state: finished 
[2025-07-28 14:22:14] 2025-07-28 18:21:41,729 | INFO     | transexitcode: 0
[2025-07-28 14:22:14] 2025-07-28 18:21:41,729 | INFO     | exeerrorcode: 0
[2025-07-28 14:22:14] 2025-07-28 18:21:41,729 | INFO     | exeerrordiag: 
[2025-07-28 14:22:14] 2025-07-28 18:21:41,729 | INFO     | exitcode: 0
[2025-07-28 14:22:14] 2025-07-28 18:21:41,730 | INFO     | exitmsg: OK
[2025-07-28 14:22:14] 2025-07-28 18:21:41,730 | INFO     | cpuconsumptiontime: 52302 s
[2025-07-28 14:22:14] 2025-07-28 18:21:41,730 | INFO     | nevents: 400
[2025-07-28 14:22:14] 2025-07-28 18:21:41,730 | INFO     | neventsw: 0
[2025-07-28 14:22:14] 2025-07-28 18:21:41,730 | INFO     | pid: 4348
[2025-07-28 14:22:14] 2025-07-28 18:21:41,730 | INFO     | pgrp: 4348
[2025-07-28 14:22:14] 2025-07-28 18:21:41,731 | INFO     | corecount: 12
[2025-07-28 14:22:14] 2025-07-28 18:21:41,731 | INFO     | event service: False
[2025-07-28 14:22:14] 2025-07-28 18:21:41,731 | INFO     | sizes: {0: 2391030, 1: 2391886, 6: 2392148, 12: 2392176, 4794: 2418364, 4797: 2427362, 4799: 2427546, 4805: 2427740}
[2025-07-28 14:22:14] 2025-07-28 18:21:41,731 | INFO     | --------------------------------------------------
[2025-07-28 14:22:14] 2025-07-28 18:21:41,731 | INFO     | 
[2025-07-28 14:22:14] 2025-07-28 18:21:41,732 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 14:22:14] 2025-07-28 18:21:41,758 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,758 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,758 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,758 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,759 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,759 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,759 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,759 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,759 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,759 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,760 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,760 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,760 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,760 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,760 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,760 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,761 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,761 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 14:22:14] 2025-07-28 18:21:41,761 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,761 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 14:22:14] 2025-07-28 18:21:41,761 | INFO     | job 6748947303 has completed (purged errors)
[2025-07-28 14:22:14] 2025-07-28 18:21:41,762 | INFO     | overall cleanup function is called
[2025-07-28 14:22:14] 2025-07-28 18:21:42,770 | INFO     | --- collectZombieJob: --- 10, [4348]
[2025-07-28 14:22:14] 2025-07-28 18:21:42,770 | INFO     | zombie collector waiting for pid 4348
[2025-07-28 14:22:14] 2025-07-28 18:21:42,770 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 14:22:14] 2025-07-28 18:21:42,770 | INFO     | collected zombie processes
[2025-07-28 14:22:14] 2025-07-28 18:21:42,770 | INFO     | will attempt to kill all subprocesses of pid=4348
[2025-07-28 14:22:14] 2025-07-28 18:21:42,865 | INFO     | process IDs to be killed: [4348] (in reverse order)
[2025-07-28 14:22:14] 2025-07-28 18:21:42,917 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 14:22:14] 2025-07-28 18:21:42,918 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 14:22:14] 2025-07-28 18:21:42,921 | INFO     | did not find any defunct processes belonging to 4348
[2025-07-28 14:22:14] 2025-07-28 18:21:42,923 | INFO     | did not find any defunct processes belonging to 4348
[2025-07-28 14:22:14] 2025-07-28 18:21:42,923 | INFO     | ready for new job
[2025-07-28 14:22:14] 2025-07-28 18:21:42,924 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 14:22:14] 2025-07-28 18:21:42,925 | INFO     | ***************************************
[2025-07-28 14:22:14] 2025-07-28 18:21:42,925 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 14:22:14] 2025-07-28 18:21:42,925 | INFO     | ***************************************
[2025-07-28 14:22:14] 2025-07-28 18:21:42,925 | INFO     | 
[2025-07-28 14:22:14] 2025-07-28 18:21:42,926 | INFO     | architecture information:
[2025-07-28 14:22:14] 2025-07-28 18:21:42,926 | INFO     | executing command: cat /etc/os-release
[2025-07-28 14:22:14] 2025-07-28 18:21:42,942 | INFO     | cat /etc/os-release:
[2025-07-28 14:22:14] NAME="CentOS Linux"
[2025-07-28 14:22:14] VERSION="7 (Core)"
[2025-07-28 14:22:14] ID="centos"
[2025-07-28 14:22:14] ID_LIKE="rhel fedora"
[2025-07-28 14:22:14] VERSION_ID="7"
[2025-07-28 14:22:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 14:22:14] ANSI_COLOR="0;31"
[2025-07-28 14:22:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 14:22:14] HOME_URL="https://www.centos.org/"
[2025-07-28 14:22:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 14:22:14] 
[2025-07-28 14:22:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 14:22:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 14:22:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 14:22:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 14:22:14] 
[2025-07-28 14:22:14] 2025-07-28 18:21:42,943 | INFO     | ***************************************
[2025-07-28 14:22:14] 2025-07-28 18:21:43,446 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 14:22:14] 2025-07-28 18:21:43,466 | INFO     | sufficient remaining disk space (29345447936 B)
[2025-07-28 14:22:14] 2025-07-28 18:21:43,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 14:22:14] 2025-07-28 18:21:43,467 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 14:22:14] 2025-07-28 18:21:43,467 | INFO     | update_server=False
[2025-07-28 14:22:14] 2025-07-28 18:21:43,467 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 14:22:14] 2025-07-28 18:21:43,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 14:22:14] 2025-07-28 18:21:44,034 | INFO     | all data control threads have been joined
[2025-07-28 14:22:14] 2025-07-28 18:21:44,243 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 14:22:14] 2025-07-28 18:21:44,243 | INFO     | aborting loop
[2025-07-28 14:22:14] 2025-07-28 18:21:44,271 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 14:22:14] 2025-07-28 18:21:44,472 | INFO     | [job] retrieve thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:44,473 | INFO     | [job] queue monitor thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:44,782 | INFO     | all payload control threads have been joined
[2025-07-28 14:22:14] 2025-07-28 18:21:44,802 | INFO     | all job control threads have been joined
[2025-07-28 14:22:14] 2025-07-28 18:21:44,971 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,040 | INFO     | [data] control thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,063 | INFO     | [job] validate thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,208 | INFO     | [payload] validate_post thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,249 | INFO     | [job] job monitor thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,305 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,537 | INFO     | [payload] failed_post thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,716 | INFO     | [data] copytool_in thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,788 | INFO     | [payload] control thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,807 | INFO     | [job] control thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,830 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:45,891 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:46,276 | INFO     | [data] copytool_out thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:46,516 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 14:22:14] 2025-07-28 18:21:50,520 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 14:22:14] 2025-07-28 18:21:50,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140542016071488)>', '<ExcThread(monitor, started 140541027137280)>']
[2025-07-28 14:22:14] 2025-07-28 18:21:55,800 | INFO     | all workflow threads have been joined
[2025-07-28 14:22:14] 2025-07-28 18:21:55,807 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 14:22:14] 2025-07-28 18:21:55,808 | INFO     | traces error code: 0
[2025-07-28 14:22:14] 2025-07-28 18:21:55,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 14:22:14] 2025-07-28 18:22:14,324 | INFO     | PID=29980 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 14:22:14] 2025-07-28 18:22:14,325 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 14:22:14] 2025-07-28 18:22:14,325 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 14:22:14] 2025-07-28 18:22:14,325 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 14:22:14] 2025-07-28 18:22:14,325 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 14:22:14] 2025-07-28 18:22:14,325 | INFO     | [monitor] control thread has ended
[2025-07-28 14:22:14] 2025-07-28 18:22:14,420 [wrapper] ==== pilot stdout END ====
[2025-07-28 14:22:14] 2025-07-28 18:22:14,424 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 14:22:14] 2025-07-28 18:22:14,427 [wrapper] pilotpid: 29980
[2025-07-28 14:22:14] 2025-07-28 18:22:14,431 [wrapper] Pilot exit status: 0
[2025-07-28 14:22:14] 2025-07-28 18:22:14,446 [wrapper] pandaids: 6748947303
[2025-07-28 14:22:14] 2025-07-28 18:22:14,484 [wrapper] cleanup supervisor_pilot 22875 29981
[2025-07-28 14:22:14] 2025-07-28 18:22:14,488 [wrapper] Test setup, not cleaning
[2025-07-28 14:22:14] 2025-07-28 18:22:14,492 [wrapper] apfmon messages muted
[2025-07-28 14:22:14] 2025-07-28 18:22:14,495 [wrapper] ==== wrapper stdout END ====
[2025-07-28 14:22:14] 2025-07-28 18:22:14,499 [wrapper] ==== wrapper stderr END ====
[2025-07-28 14:22:14]  *** Error codes and diagnostics ***
[2025-07-28 14:22:14]     "exeErrorCode": 0,
[2025-07-28 14:22:14]     "exeErrorDiag": "",
[2025-07-28 14:22:14]     "pilotErrorCode": 0,
[2025-07-28 14:22:14]     "pilotErrorDiag": "",
[2025-07-28 14:22:14]  *** Listing of results directory ***
[2025-07-28 14:22:14] total 434608
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 12:54 pilot3.tar.gz
[2025-07-28 14:22:14] -rwx------ 1 boincer umatlas     36292 Jul 28 13:00 runpilot2-wrapper.sh
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 13:00 queuedata.json
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas       100 Jul 28 13:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 14:22:14] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 13:01 run_atlas
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas       105 Jul 28 13:01 job.xml
[2025-07-28 14:22:14] -rw-r--r-- 2 boincer umatlas 232317380 Jul 28 13:01 EVNT.45743347._002204.pool.root.1
[2025-07-28 14:22:14] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 13:01 start_atlas.sh
[2025-07-28 14:22:14] drwxrwx--x 2 boincer umatlas      4096 Jul 28 13:01 shared
[2025-07-28 14:22:14] -rw-r--r-- 2 boincer umatlas    542896 Jul 28 13:01 input.tar.gz
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas         0 Jul 28 13:01 boinc_lockfile
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas      2562 Jul 28 13:01 pandaJob.out
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas    977348 Jul 28 13:01 agis_schedconf.cvmfs.json
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas   1589827 Jul 28 13:01 agis_ddmendpoints.agis.ALL.json
[2025-07-28 14:22:14] drwx------ 4 boincer umatlas      4096 Jul 28 13:01 pilot3
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas 207165782 Jul 28 14:20 HITS.45743349._056487.pool.root.1
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas        95 Jul 28 14:21 pilot_heartbeat.json
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas      1050 Jul 28 14:21 memory_monitor_summary.json
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas       530 Jul 28 14:21 boinc_task_state.xml
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas    381284 Jul 28 14:21 log.45743349._056487.job.log.tgz.1
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas      7849 Jul 28 14:21 heartbeat.json
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas      5867 Jul 28 14:21 init_data.xml
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 14:22 boinc_mmap_file
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas        27 Jul 28 14:22 wrapper_checkpoint.txt
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas       745 Jul 28 14:22 pilotlog.txt
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas    459514 Jul 28 14:22 log.45743349._056487.job.log.1
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas       357 Jul 28 14:22 output.list
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas       620 Jul 28 14:22 runtime_log
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas    860160 Jul 28 14:22 result.tar.gz
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas       658 Jul 28 14:22 U6oKDmROg07n9Rq4apOajLDm4fhM0noT9bVof3QYDmsF3KDmdqrSdm.diag
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas      8657 Jul 28 14:22 runtime_log.err
[2025-07-28 14:22:14] -rw-r--r-- 1 boincer umatlas     21858 Jul 28 14:22 stderr.txt
[2025-07-28 14:22:14] HITS file was successfully produced:
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas 207165782 Jul 28 14:20 shared/HITS.pool.root.1
[2025-07-28 14:22:14]  *** Contents of shared directory: ***
[2025-07-28 14:22:14] total 430580
[2025-07-28 14:22:14] -rw-r--r-- 2 boincer umatlas 232317380 Jul 28 13:01 ATLAS.root_0
[2025-07-28 14:22:14] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 13:01 start_atlas.sh
[2025-07-28 14:22:14] -rw-r--r-- 2 boincer umatlas    542896 Jul 28 13:01 input.tar.gz
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas 207165782 Jul 28 14:20 HITS.pool.root.1
[2025-07-28 14:22:14] -rw------- 1 boincer umatlas    860160 Jul 28 14:22 result.tar.gz
14:22:15 (26373): run_atlas exited; CPU time 52278.578043
14:22:15 (26373): called boinc_finish(0)

</stderr_txt>
]]>

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