Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:28:53 (31051): wrapper (7.7.26015): starting
11:28:53 (31051): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 11:28:53] Arguments: --nthreads 12
[2025-07-28 11:28:53] Threads: 12
[2025-07-28 11:28:53] Checking for CVMFS
[2025-07-28 11:28:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 11:28:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 11:28:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 11:28:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 11:28:53] 2.11.2.0 2914 113623 97964 148853 1 1 15694451 20275201 1 130560 0 38769310 99.970 9779519 10689 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 11:28:53] CVMFS is ok
[2025-07-28 11:28:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 11:28:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 11:28:53] Further information can be found at the LHC@home message board.
[2025-07-28 11:28:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 11:28:53] Checking for apptainer binary...
[2025-07-28 11:28:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 11:28:53] Running /usr/bin/apptainer --version
[2025-07-28 11:28:53] apptainer version 1.3.2-1.el7
[2025-07-28 11:28:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 11:28:55] c-205-5.aglt2.org
[2025-07-28 11:28:55] apptainer works
[2025-07-28 11:28:55] Set ATHENA_PROC_NUMBER=12
[2025-07-28 11:28:55] Set ATHENA_CORE_NUMBER=12
[2025-07-28 11:28:55] Starting ATLAS job with PandaID=6748782617
[2025-07-28 11:28:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 12:57:38]  *** The last 200 lines of the pilot log: ***
[2025-07-28 12:57:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 12:57:38]  replicas=None
[2025-07-28 12:57:38]  scope=mc23_13p6TeV
[2025-07-28 12:57:38]  status=None
[2025-07-28 12:57:38]  status_code=0
[2025-07-28 12:57:38]  storage_token=
[2025-07-28 12:57:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748782617/log.45803666._000099.job.log.tgz.1
[2025-07-28 12:57:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/b2/log.45803666._000099.job.log.tgz.1
[2025-07-28 12:57:38]  workdir=None
[2025-07-28 12:57:38] ]
[2025-07-28 12:57:38] 2025-07-28 16:56:55,913 | INFO     | transferring file log.45803666._000099.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748782617/log.45803666._000099.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 12:57:38] 2025-07-28 16:56:55,913 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748782617/log.45803666._000099.job.log.tgz.1 /tmp/boinchome/slots/0/log.45803666._000099.job
[2025-07-28 12:57:38] 2025-07-28 16:56:55,955 | INFO     | adding to output.list: log.45803666._000099.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/b2/log.45803666._000099.job.log.tg
[2025-07-28 12:57:38] 2025-07-28 16:56:55,956 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 12:57:38] 2025-07-28 16:56:55,956 | INFO     | summary of transferred files:
[2025-07-28 12:57:38] 2025-07-28 16:56:55,956 | INFO     |  -- lfn=log.45803666._000099.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 12:57:38] 2025-07-28 16:56:55,957 | INFO     | stage-out finished correctly
[2025-07-28 12:57:38] 2025-07-28 16:56:57,840 | WARNING  | process 8928 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 12:57:38] 2025-07-28 16:56:57,841 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748782617/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:57:38] 2025-07-28 16:56:57,927 | INFO     | number of running child processes to parent process 8928: 1
[2025-07-28 12:57:38] 2025-07-28 16:56:57,927 | INFO     | maximum number of monitored processes: 6
[2025-07-28 12:57:38] 2025-07-28 16:56:58,928 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 12:57:38] 2025-07-28 16:57:00,430 | INFO     | monitor loop #394: job 0:6748782617 is in state 'finished'
[2025-07-28 12:57:38] 2025-07-28 16:57:00,430 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:57:38] 2025-07-28 16:57:02,004 | INFO     | job 6748782617 has state=finished
[2025-07-28 12:57:38] 2025-07-28 16:57:02,005 | INFO     | preparing for final server update for job 6748782617 in state='finished'
[2025-07-28 12:57:38] 2025-07-28 16:57:02,005 | INFO     | this job has now completed (state=finished)
[2025-07-28 12:57:38] 2025-07-28 16:57:02,005 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 12:57:38] 2025-07-28 16:57:02,006 | INFO     | log transfer has been attempted: DONE
[2025-07-28 12:57:38] 2025-07-28 16:57:02,006 | INFO     | job 6748782617 has finished - writing final server update
[2025-07-28 12:57:38] 2025-07-28 16:57:02,006 | INFO     | total number of processed events: 400 (read)
[2025-07-28 12:57:38] 2025-07-28 16:57:02,007 | INFO     | executing command: lscpu
[2025-07-28 12:57:38] 2025-07-28 16:57:02,032 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 12:57:38] 2025-07-28 16:57:02,933 | INFO     | monitor loop #395: job 0:6748782617 is in state 'finished'
[2025-07-28 12:57:38] 2025-07-28 16:57:02,933 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:57:38] 2025-07-28 16:57:05,436 | INFO     | monitor loop #396: job 0:6748782617 is in state 'finished'
[2025-07-28 12:57:38] 2025-07-28 16:57:05,436 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 12:57:38] 2025-07-28 16:57:07,061 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 12:57:38] 2025-07-28 16:57:07,069 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1706.9166666666667
[2025-07-28 12:57:38] 2025-07-28 16:57:07,070 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748782617/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 12:57:38] 2025-07-28 16:57:07,071 | INFO     | extracted standard info from prmon json
[2025-07-28 12:57:38] 2025-07-28 16:57:07,071 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 12:57:38] 2025-07-28 16:57:07,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 12:57:38] 2025-07-28 16:57:07,071 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 12:57:38] 2025-07-28 16:57:07,072 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 12:57:38] 2025-07-28 16:57:07,073 | INFO     | fitting pss+swap vs Time
[2025-07-28 12:57:38] 2025-07-28 16:57:07,074 | INFO     | sum of square deviations: 152858680.0
[2025-07-28 12:57:38] 2025-07-28 16:57:07,074 | INFO     | sum of deviations: -7460960629.999999
[2025-07-28 12:57:38] 2025-07-28 16:57:07,074 | INFO     | mean x: 1753719264.0
[2025-07-28 12:57:38] 2025-07-28 16:57:07,074 | INFO     | mean y: 2770559.7721518986
[2025-07-28 12:57:38] 2025-07-28 16:57:07,074 | INFO     | -- intersect: 85600987061.29222
[2025-07-28 12:57:38] 2025-07-28 16:57:07,075 | INFO     | intersect: 85600987061.29222
[2025-07-28 12:57:38] 2025-07-28 16:57:07,075 | INFO     | chi2: 0.08926693972126029
[2025-07-28 12:57:38] 2025-07-28 16:57:07,075 | INFO     | -- intersect: 85600987061.29222
[2025-07-28 12:57:38] 2025-07-28 16:57:07,075 | INFO     | current memory leak: -48.81 B/s (using 79 data points, chi2=0.09)
[2025-07-28 12:57:38] 2025-07-28 16:57:07,075 | INFO     | could have reported an average CPU frequency of 2030 MHz (6 samples)
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | ..............................
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . Timing measurements:
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . get job = 0 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . initial setup = 2 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . payload setup = 10 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . stage-in = 0 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . payload execution = 5236 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . stage-out = 0 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,076 | INFO     | . log creation = 0 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,077 | INFO     | ..............................
[2025-07-28 12:57:38] 2025-07-28 16:57:07,161 | INFO     | 
[2025-07-28 12:57:38] 2025-07-28 16:57:07,161 | INFO     | job summary report
[2025-07-28 12:57:38] 2025-07-28 16:57:07,161 | INFO     | --------------------------------------------------
[2025-07-28 12:57:38] 2025-07-28 16:57:07,161 | INFO     | PanDA job id: 6748782617
[2025-07-28 12:57:38] 2025-07-28 16:57:07,161 | INFO     | task id: 45803666
[2025-07-28 12:57:38] 2025-07-28 16:57:07,162 | INFO     | errors: (none)
[2025-07-28 12:57:38] 2025-07-28 16:57:07,162 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 12:57:38] 2025-07-28 16:57:07,162 | INFO     | pilot state: finished 
[2025-07-28 12:57:38] 2025-07-28 16:57:07,162 | INFO     | transexitcode: 0
[2025-07-28 12:57:38] 2025-07-28 16:57:07,162 | INFO     | exeerrorcode: 0
[2025-07-28 12:57:38] 2025-07-28 16:57:07,162 | INFO     | exeerrordiag: 
[2025-07-28 12:57:38] 2025-07-28 16:57:07,163 | INFO     | exitcode: 0
[2025-07-28 12:57:38] 2025-07-28 16:57:07,163 | INFO     | exitmsg: OK
[2025-07-28 12:57:38] 2025-07-28 16:57:07,163 | INFO     | cpuconsumptiontime: 57177 s
[2025-07-28 12:57:38] 2025-07-28 16:57:07,163 | INFO     | nevents: 400
[2025-07-28 12:57:38] 2025-07-28 16:57:07,163 | INFO     | neventsw: 0
[2025-07-28 12:57:38] 2025-07-28 16:57:07,163 | INFO     | pid: 8928
[2025-07-28 12:57:38] 2025-07-28 16:57:07,164 | INFO     | pgrp: 8928
[2025-07-28 12:57:38] 2025-07-28 16:57:07,164 | INFO     | corecount: 12
[2025-07-28 12:57:38] 2025-07-28 16:57:07,164 | INFO     | event service: False
[2025-07-28 12:57:38] 2025-07-28 16:57:07,164 | INFO     | sizes: {0: 2391600, 1: 2391855, 6: 2392117, 12: 2392145, 5250: 2418579, 5251: 2427577, 5254: 2427761, 5262: 2427955}
[2025-07-28 12:57:38] 2025-07-28 16:57:07,164 | INFO     | --------------------------------------------------
[2025-07-28 12:57:38] 2025-07-28 16:57:07,164 | INFO     | 
[2025-07-28 12:57:38] 2025-07-28 16:57:07,165 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 12:57:38] 2025-07-28 16:57:07,190 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,191 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,191 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,191 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,191 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,191 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,191 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,192 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,192 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,192 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,192 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,192 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,192 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,193 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,193 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 12:57:38] 2025-07-28 16:57:07,193 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,193 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 12:57:38] 2025-07-28 16:57:07,193 | INFO     | job 6748782617 has completed (purged errors)
[2025-07-28 12:57:38] 2025-07-28 16:57:07,194 | INFO     | overall cleanup function is called
[2025-07-28 12:57:38] 2025-07-28 16:57:08,202 | INFO     | --- collectZombieJob: --- 10, [8928]
[2025-07-28 12:57:38] 2025-07-28 16:57:08,202 | INFO     | zombie collector waiting for pid 8928
[2025-07-28 12:57:38] 2025-07-28 16:57:08,202 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 12:57:38] 2025-07-28 16:57:08,202 | INFO     | collected zombie processes
[2025-07-28 12:57:38] 2025-07-28 16:57:08,202 | INFO     | will attempt to kill all subprocesses of pid=8928
[2025-07-28 12:57:38] 2025-07-28 16:57:08,292 | INFO     | process IDs to be killed: [8928] (in reverse order)
[2025-07-28 12:57:38] 2025-07-28 16:57:08,342 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 12:57:38] 2025-07-28 16:57:08,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 12:57:38] 2025-07-28 16:57:08,346 | INFO     | did not find any defunct processes belonging to 8928
[2025-07-28 12:57:38] 2025-07-28 16:57:08,349 | INFO     | did not find any defunct processes belonging to 8928
[2025-07-28 12:57:38] 2025-07-28 16:57:08,349 | INFO     | ready for new job
[2025-07-28 12:57:38] 2025-07-28 16:57:08,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 12:57:38] 2025-07-28 16:57:08,350 | INFO     | ***************************************
[2025-07-28 12:57:38] 2025-07-28 16:57:08,350 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 12:57:38] 2025-07-28 16:57:08,350 | INFO     | ***************************************
[2025-07-28 12:57:38] 2025-07-28 16:57:08,351 | INFO     | 
[2025-07-28 12:57:38] 2025-07-28 16:57:08,351 | INFO     | architecture information:
[2025-07-28 12:57:38] 2025-07-28 16:57:08,352 | INFO     | executing command: cat /etc/os-release
[2025-07-28 12:57:38] 2025-07-28 16:57:08,366 | INFO     | cat /etc/os-release:
[2025-07-28 12:57:38] NAME="CentOS Linux"
[2025-07-28 12:57:38] VERSION="7 (Core)"
[2025-07-28 12:57:38] ID="centos"
[2025-07-28 12:57:38] ID_LIKE="rhel fedora"
[2025-07-28 12:57:38] VERSION_ID="7"
[2025-07-28 12:57:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 12:57:38] ANSI_COLOR="0;31"
[2025-07-28 12:57:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 12:57:38] HOME_URL="https://www.centos.org/"
[2025-07-28 12:57:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 12:57:38] 
[2025-07-28 12:57:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 12:57:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 12:57:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 12:57:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 12:57:38] 
[2025-07-28 12:57:38] 2025-07-28 16:57:08,366 | INFO     | ***************************************
[2025-07-28 12:57:38] 2025-07-28 16:57:08,869 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 12:57:38] 2025-07-28 16:57:08,885 | INFO     | sufficient remaining disk space (29264707584 B)
[2025-07-28 12:57:38] 2025-07-28 16:57:08,886 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 12:57:38] 2025-07-28 16:57:08,886 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 12:57:38] 2025-07-28 16:57:08,886 | INFO     | update_server=False
[2025-07-28 12:57:38] 2025-07-28 16:57:08,886 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 12:57:38] 2025-07-28 16:57:08,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:57:38] 2025-07-28 16:57:08,941 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 12:57:38] 2025-07-28 16:57:08,941 | INFO     | aborting loop
[2025-07-28 12:57:38] 2025-07-28 16:57:09,057 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 12:57:38] 2025-07-28 16:57:09,418 | INFO     | all data control threads have been joined
[2025-07-28 12:57:38] 2025-07-28 16:57:09,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 12:57:38] 2025-07-28 16:57:09,888 | INFO     | [job] queue monitor thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:09,892 | INFO     | [job] retrieve thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:09,945 | INFO     | [job] job monitor thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:10,023 | INFO     | all job control threads have been joined
[2025-07-28 12:57:38] 2025-07-28 16:57:10,145 | INFO     | [job] validate thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:10,267 | INFO     | all payload control threads have been joined
[2025-07-28 12:57:38] 2025-07-28 16:57:10,423 | INFO     | [data] control thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:10,575 | INFO     | [payload] validate_post thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:10,659 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:10,897 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:10,984 | INFO     | [payload] failed_post thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:11,029 | INFO     | [job] control thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:11,062 | INFO     | [data] copytool_out thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:11,090 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:11,272 | INFO     | [payload] control thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:11,372 | INFO     | [data] copytool_in thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:13,525 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:19,411 | INFO     | job.realtimelogging is not enabled
[2025-07-28 12:57:38] 2025-07-28 16:57:20,425 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 12:57:38] 2025-07-28 16:57:20,992 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139765327324992)>', '<ExcThread(monitor, started 139764661475072)>']
[2025-07-28 12:57:38] 2025-07-28 16:57:26,006 | INFO     | all workflow threads have been joined
[2025-07-28 12:57:38] 2025-07-28 16:57:26,006 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 12:57:38] 2025-07-28 16:57:26,007 | INFO     | traces error code: 0
[2025-07-28 12:57:38] 2025-07-28 16:57:26,007 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 12:57:38] 2025-07-28 16:57:38,511 | INFO     | PID=2472 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 12:57:38] 2025-07-28 16:57:38,512 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 12:57:38] 2025-07-28 16:57:38,512 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 12:57:38] 2025-07-28 16:57:38,512 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 12:57:38] 2025-07-28 16:57:38,512 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 12:57:38] 2025-07-28 16:57:38,512 | INFO     | [monitor] control thread has ended
[2025-07-28 12:57:38] 2025-07-28 16:57:38,605 [wrapper] ==== pilot stdout END ====
[2025-07-28 12:57:38] 2025-07-28 16:57:38,608 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 12:57:38] 2025-07-28 16:57:38,612 [wrapper] pilotpid: 2472
[2025-07-28 12:57:38] 2025-07-28 16:57:38,616 [wrapper] Pilot exit status: 0
[2025-07-28 12:57:38] 2025-07-28 16:57:38,633 [wrapper] pandaids: 6748782617
[2025-07-28 12:57:38] 2025-07-28 16:57:38,673 [wrapper] cleanup supervisor_pilot  1040 2473
[2025-07-28 12:57:38] 2025-07-28 16:57:38,678 [wrapper] Test setup, not cleaning
[2025-07-28 12:57:38] 2025-07-28 16:57:38,681 [wrapper] apfmon messages muted
[2025-07-28 12:57:38] 2025-07-28 16:57:38,685 [wrapper] ==== wrapper stdout END ====
[2025-07-28 12:57:38] 2025-07-28 16:57:38,689 [wrapper] ==== wrapper stderr END ====
[2025-07-28 12:57:38]  *** Error codes and diagnostics ***
[2025-07-28 12:57:38]     "exeErrorCode": 0,
[2025-07-28 12:57:38]     "exeErrorDiag": "",
[2025-07-28 12:57:38]     "pilotErrorCode": 0,
[2025-07-28 12:57:38]     "pilotErrorDiag": "",
[2025-07-28 12:57:38]  *** Listing of results directory ***
[2025-07-28 12:57:38] total 475344
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 11:02 pilot3.tar.gz
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 11:27 queuedata.json
[2025-07-28 12:57:38] -rwx------ 1 boincer umatlas     36292 Jul 28 11:28 runpilot2-wrapper.sh
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas       100 Jul 28 11:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 12:57:38] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 11:28 run_atlas
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas       105 Jul 28 11:28 job.xml
[2025-07-28 12:57:38] -rw-r--r-- 2 boincer umatlas 267843802 Jul 28 11:28 EVNT.45803661._000004.pool.root.1
[2025-07-28 12:57:38] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 11:28 start_atlas.sh
[2025-07-28 12:57:38] drwxrwx--x 2 boincer umatlas      4096 Jul 28 11:28 shared
[2025-07-28 12:57:38] -rw-r--r-- 2 boincer umatlas    542873 Jul 28 11:28 input.tar.gz
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas         0 Jul 28 11:28 boinc_lockfile
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas      2508 Jul 28 11:28 pandaJob.out
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas    977006 Jul 28 11:29 agis_schedconf.cvmfs.json
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas   1589827 Jul 28 11:29 agis_ddmendpoints.agis.ALL.json
[2025-07-28 12:57:38] drwx------ 4 boincer umatlas      4096 Jul 28 11:29 pilot3
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas      5866 Jul 28 12:54 init_data.xml
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas 213282296 Jul 28 12:56 HITS.45803666._000099.pool.root.1
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas      1047 Jul 28 12:56 memory_monitor_summary.json
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas       529 Jul 28 12:56 boinc_task_state.xml
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas    383510 Jul 28 12:56 log.45803666._000099.job.log.tgz.1
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas      7840 Jul 28 12:57 heartbeat.json
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 12:57 boinc_mmap_file
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas        27 Jul 28 12:57 wrapper_checkpoint.txt
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas        95 Jul 28 12:57 pilot_heartbeat.json
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas       744 Jul 28 12:57 pilotlog.txt
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas    497017 Jul 28 12:57 log.45803666._000099.job.log.1
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas       357 Jul 28 12:57 output.list
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas       620 Jul 28 12:57 runtime_log
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas    901120 Jul 28 12:57 result.tar.gz
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas      8657 Jul 28 12:57 runtime_log.err
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas       659 Jul 28 12:57 JScNDmpwe07n9Rq4apOajLDm4fhM0noT9bVof3QYDmVF3KDmBDPk4n.diag
[2025-07-28 12:57:38] -rw-r--r-- 1 boincer umatlas     21910 Jul 28 12:57 stderr.txt
[2025-07-28 12:57:38] HITS file was successfully produced:
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas 213282296 Jul 28 12:56 shared/HITS.pool.root.1
[2025-07-28 12:57:38]  *** Contents of shared directory: ***
[2025-07-28 12:57:38] total 471280
[2025-07-28 12:57:38] -rw-r--r-- 2 boincer umatlas 267843802 Jul 28 11:28 ATLAS.root_0
[2025-07-28 12:57:38] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 11:28 start_atlas.sh
[2025-07-28 12:57:38] -rw-r--r-- 2 boincer umatlas    542873 Jul 28 11:28 input.tar.gz
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas 213282296 Jul 28 12:56 HITS.pool.root.1
[2025-07-28 12:57:38] -rw------- 1 boincer umatlas    901120 Jul 28 12:57 result.tar.gz
12:57:40 (31051): run_atlas exited; CPU time 57146.517492
12:57:40 (31051): called boinc_finish(0)

</stderr_txt>
]]>

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