Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:04:51 (3757965): wrapper (7.7.26015): starting
09:04:51 (3757965): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 09:04:51] Arguments: --nthreads 12
[2025-07-28 09:04:51] Threads: 12
[2025-07-28 09:04:51] Checking for CVMFS
[2025-07-28 09:04:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 09:04:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 09:04:51] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 09:04:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 09:04:51] 2.12.6.0 18753 19859 332268 148848 0 438 24198636 32935937 11124 16776704 0 35764158 99.615 80327111 26659 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 09:04:51] CVMFS is ok
[2025-07-28 09:04:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 09:04:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 09:04:51] Further information can be found at the LHC@home message board.
[2025-07-28 09:04:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 09:04:51] Checking for apptainer binary...
[2025-07-28 09:04:51] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 09:04:51] Running /usr/bin/apptainer --version
[2025-07-28 09:04:51] apptainer version 1.4.1-1.el9
[2025-07-28 09:04:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 09:04:52] c6-1-24-4.aglt2.org
[2025-07-28 09:04:52] apptainer works
[2025-07-28 09:04:52] Set ATHENA_PROC_NUMBER=12
[2025-07-28 09:04:52] Set ATHENA_CORE_NUMBER=12
[2025-07-28 09:04:52] Starting ATLAS job with PandaID=6748687008
[2025-07-28 09:04:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 10:29:27]  *** The last 200 lines of the pilot log: ***
[2025-07-28 10:29:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 10:29:27]  replicas=None
[2025-07-28 10:29:27]  scope=mc23_13p6TeV
[2025-07-28 10:29:27]  status=None
[2025-07-28 10:29:27]  status_code=0
[2025-07-28 10:29:27]  storage_token=
[2025-07-28 10:29:27]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748687008/log.45743349._056431.job.log.tgz.1
[2025-07-28 10:29:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/61/log.45743349._056431.job.log.tgz.1
[2025-07-28 10:29:27]  workdir=None
[2025-07-28 10:29:27] ]
[2025-07-28 10:29:27] 2025-07-28 14:28:45,942 | INFO     | transferring file log.45743349._056431.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748687008/log.45743349._056431.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 10:29:27] 2025-07-28 14:28:45,943 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748687008/log.45743349._056431.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056431.job
[2025-07-28 10:29:27] 2025-07-28 14:28:45,959 | INFO     | adding to output.list: log.45743349._056431.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/c5/61/log.45743349._056431.job.log.tg
[2025-07-28 10:29:27] 2025-07-28 14:28:45,961 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 10:29:27] 2025-07-28 14:28:45,961 | INFO     | summary of transferred files:
[2025-07-28 10:29:27] 2025-07-28 14:28:45,961 | INFO     |  -- lfn=log.45743349._056431.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 10:29:27] 2025-07-28 14:28:45,961 | INFO     | stage-out finished correctly
[2025-07-28 10:29:27] 2025-07-28 14:28:46,044 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 10:29:27] 2025-07-28 14:28:47,383 | WARNING  | process 3768509 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 10:29:27] 2025-07-28 14:28:47,383 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748687008/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 10:29:27] 2025-07-28 14:28:47,604 | INFO     | number of running child processes to parent process 3768509: 1
[2025-07-28 10:29:27] 2025-07-28 14:28:47,604 | INFO     | maximum number of monitored processes: 6
[2025-07-28 10:29:27] 2025-07-28 14:28:48,516 | INFO     | job 6748687008 has state=finished
[2025-07-28 10:29:27] 2025-07-28 14:28:48,517 | INFO     | preparing for final server update for job 6748687008 in state='finished'
[2025-07-28 10:29:27] 2025-07-28 14:28:48,517 | INFO     | this job has now completed (state=finished)
[2025-07-28 10:29:27] 2025-07-28 14:28:48,517 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 10:29:27] 2025-07-28 14:28:48,517 | INFO     | log transfer has been attempted: DONE
[2025-07-28 10:29:27] 2025-07-28 14:28:48,518 | INFO     | job 6748687008 has finished - writing final server update
[2025-07-28 10:29:27] 2025-07-28 14:28:48,518 | INFO     | total number of processed events: 400 (read)
[2025-07-28 10:29:27] 2025-07-28 14:28:48,519 | INFO     | executing command: lscpu
[2025-07-28 10:29:27] 2025-07-28 14:28:48,581 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 10:29:27] 2025-07-28 14:28:48,742 | INFO     | PID=3761542 has CPU usage=11.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 10:29:27] 2025-07-28 14:28:48,743 | INFO     | .. there are 15 such processes running
[2025-07-28 10:29:27] 2025-07-28 14:28:50,108 | INFO     | monitor loop #360: job 0:6748687008 is in state 'finished'
[2025-07-28 10:29:27] 2025-07-28 14:28:50,109 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:29:27] 2025-07-28 14:28:52,613 | INFO     | monitor loop #361: job 0:6748687008 is in state 'finished'
[2025-07-28 10:29:27] 2025-07-28 14:28:52,613 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 10:29:27] 2025-07-28 14:28:53,868 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 10:29:27] 2025-07-28 14:28:53,884 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2818.521125
[2025-07-28 10:29:27] 2025-07-28 14:28:53,893 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748687008/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 10:29:27] 2025-07-28 14:28:53,894 | INFO     | extracted standard info from prmon json
[2025-07-28 10:29:27] 2025-07-28 14:28:53,894 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 10:29:27] 2025-07-28 14:28:53,894 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 10:29:27] 2025-07-28 14:28:53,895 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 10:29:27] 2025-07-28 14:28:53,895 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 10:29:27] 2025-07-28 14:28:53,897 | INFO     | fitting pss+swap vs Time
[2025-07-28 10:29:27] 2025-07-28 14:28:53,897 | INFO     | sum of square deviations: 130797542.98666653
[2025-07-28 10:29:27] 2025-07-28 14:28:53,897 | INFO     | sum of deviations: 2484613226.3200016
[2025-07-28 10:29:27] 2025-07-28 14:28:53,898 | INFO     | mean x: 1753710503.0133333
[2025-07-28 10:29:27] 2025-07-28 14:28:53,898 | INFO     | mean y: 2357388.68
[2025-07-28 10:29:27] 2025-07-28 14:28:53,898 | INFO     | -- intersect: -33310900730.911835
[2025-07-28 10:29:27] 2025-07-28 14:28:53,898 | INFO     | intersect: -33310900730.911835
[2025-07-28 10:29:27] 2025-07-28 14:28:53,898 | INFO     | chi2: 0.05094016724540259
[2025-07-28 10:29:27] 2025-07-28 14:28:53,898 | INFO     | -- intersect: -33310900730.911835
[2025-07-28 10:29:27] 2025-07-28 14:28:53,898 | INFO     | current memory leak: 19.00 B/s (using 75 data points, chi2=0.05)
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | could have reported an average CPU frequency of 2880 MHz (6 samples)
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | ..............................
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . Timing measurements:
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . get job = 0 s
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . initial setup = 7 s
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . payload setup = 8 s
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . stage-in = 0 s
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . payload execution = 4985 s
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . stage-out = 0 s
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | . log creation = 0 s
[2025-07-28 10:29:27] 2025-07-28 14:28:53,899 | INFO     | ..............................
[2025-07-28 10:29:27] 2025-07-28 14:28:54,283 | INFO     | 
[2025-07-28 10:29:27] 2025-07-28 14:28:54,283 | INFO     | job summary report
[2025-07-28 10:29:27] 2025-07-28 14:28:54,283 | INFO     | --------------------------------------------------
[2025-07-28 10:29:27] 2025-07-28 14:28:54,283 | INFO     | PanDA job id: 6748687008
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | task id: 45743349
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | errors: (none)
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | pilot state: finished 
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | transexitcode: 0
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | exeerrorcode: 0
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | exeerrordiag: 
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | exitcode: 0
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | exitmsg: OK
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | cpuconsumptiontime: 46248 s
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | nevents: 400
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | neventsw: 0
[2025-07-28 10:29:27] 2025-07-28 14:28:54,284 | INFO     | pid: 3768509
[2025-07-28 10:29:27] 2025-07-28 14:28:54,285 | INFO     | pgrp: 3768509
[2025-07-28 10:29:27] 2025-07-28 14:28:54,285 | INFO     | corecount: 12
[2025-07-28 10:29:27] 2025-07-28 14:28:54,285 | INFO     | event service: False
[2025-07-28 10:29:27] 2025-07-28 14:28:54,285 | INFO     | sizes: {0: 2397422, 5: 2397684, 11: 2397740, 4997: 2423953, 4999: 2433007, 5007: 2433145}
[2025-07-28 10:29:27] 2025-07-28 14:28:54,285 | INFO     | --------------------------------------------------
[2025-07-28 10:29:27] 2025-07-28 14:28:54,285 | INFO     | 
[2025-07-28 10:29:27] 2025-07-28 14:28:54,285 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 10:29:27] 2025-07-28 14:28:54,313 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,313 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,314 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | job 6748687008 has completed (purged errors)
[2025-07-28 10:29:27] 2025-07-28 14:28:54,315 | INFO     | overall cleanup function is called
[2025-07-28 10:29:27] 2025-07-28 14:28:55,325 | INFO     | --- collectZombieJob: --- 10, [3768509]
[2025-07-28 10:29:27] 2025-07-28 14:28:55,326 | INFO     | zombie collector waiting for pid 3768509
[2025-07-28 10:29:27] 2025-07-28 14:28:55,326 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 10:29:27] 2025-07-28 14:28:55,326 | INFO     | collected zombie processes
[2025-07-28 10:29:27] 2025-07-28 14:28:55,326 | INFO     | will attempt to kill all subprocesses of pid=3768509
[2025-07-28 10:29:27] 2025-07-28 14:28:55,607 | INFO     | process IDs to be killed: [3768509] (in reverse order)
[2025-07-28 10:29:27] 2025-07-28 14:28:55,714 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 10:29:27] 2025-07-28 14:28:55,714 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 10:29:27] 2025-07-28 14:28:55,727 | INFO     | did not find any defunct processes belonging to 3768509
[2025-07-28 10:29:27] 2025-07-28 14:28:55,739 | INFO     | did not find any defunct processes belonging to 3768509
[2025-07-28 10:29:27] 2025-07-28 14:28:55,739 | INFO     | ready for new job
[2025-07-28 10:29:27] 2025-07-28 14:28:55,739 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 10:29:27] 2025-07-28 14:28:55,741 | INFO     | ***************************************
[2025-07-28 10:29:27] 2025-07-28 14:28:55,741 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 10:29:27] 2025-07-28 14:28:55,741 | INFO     | ***************************************
[2025-07-28 10:29:27] 2025-07-28 14:28:55,741 | INFO     | 
[2025-07-28 10:29:27] 2025-07-28 14:28:55,757 | INFO     | architecture information:
[2025-07-28 10:29:27] 2025-07-28 14:28:55,757 | INFO     | executing command: cat /etc/os-release
[2025-07-28 10:29:27] 2025-07-28 14:28:55,777 | INFO     | cat /etc/os-release:
[2025-07-28 10:29:27] NAME="CentOS Linux"
[2025-07-28 10:29:27] VERSION="7 (Core)"
[2025-07-28 10:29:27] ID="centos"
[2025-07-28 10:29:27] ID_LIKE="rhel fedora"
[2025-07-28 10:29:27] VERSION_ID="7"
[2025-07-28 10:29:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 10:29:27] ANSI_COLOR="0;31"
[2025-07-28 10:29:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 10:29:27] HOME_URL="https://www.centos.org/"
[2025-07-28 10:29:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 10:29:27] 
[2025-07-28 10:29:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 10:29:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 10:29:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 10:29:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 10:29:27] 
[2025-07-28 10:29:27] 2025-07-28 14:28:55,777 | INFO     | ***************************************
[2025-07-28 10:29:27] 2025-07-28 14:28:56,281 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 10:29:27] 2025-07-28 14:28:56,299 | INFO     | sufficient remaining disk space (76673974272 B)
[2025-07-28 10:29:27] 2025-07-28 14:28:56,300 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 10:29:27] 2025-07-28 14:28:56,300 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 10:29:27] 2025-07-28 14:28:56,300 | INFO     | update_server=False
[2025-07-28 10:29:27] 2025-07-28 14:28:56,300 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 10:29:27] 2025-07-28 14:28:56,301 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 10:29:27] 2025-07-28 14:28:56,301 | INFO     | aborting loop
[2025-07-28 10:29:27] 2025-07-28 14:28:56,333 | INFO     | all data control threads have been joined
[2025-07-28 10:29:27] 2025-07-28 14:28:56,402 | INFO     | all job control threads have been joined
[2025-07-28 10:29:27] 2025-07-28 14:28:56,562 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 10:29:27] 2025-07-28 14:28:56,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 10:29:27] 2025-07-28 14:28:57,146 | INFO     | all payload control threads have been joined
[2025-07-28 10:29:27] 2025-07-28 14:28:57,306 | INFO     | [job] job monitor thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:57,306 | INFO     | [job] retrieve thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:57,339 | INFO     | [data] control thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:57,407 | INFO     | [job] control thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:57,454 | INFO     | [job] validate thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:57,623 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:57,937 | INFO     | [payload] validate_post thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,109 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,151 | INFO     | [payload] control thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,397 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,406 | INFO     | [data] copytool_in thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,545 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,568 | INFO     | [data] copytool_out thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,722 | INFO     | [payload] failed_post thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:28:58,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 10:29:27] 2025-07-28 14:29:00,001 | INFO     | [job] queue monitor thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:29:00,638 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 10:29:27] 2025-07-28 14:29:02,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140016945702720)>', '<ExcThread(monitor, started 140016437147392)>']
[2025-07-28 10:29:27] 2025-07-28 14:29:07,673 | INFO     | all workflow threads have been joined
[2025-07-28 10:29:27] 2025-07-28 14:29:07,673 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 10:29:27] 2025-07-28 14:29:07,674 | INFO     | traces error code: 0
[2025-07-28 10:29:27] 2025-07-28 14:29:07,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 10:29:27] 2025-07-28 14:29:27,114 | INFO     | PID=3761542 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 10:29:27] 2025-07-28 14:29:27,115 | INFO     | .. there are 15 such processes running
[2025-07-28 10:29:27] 2025-07-28 14:29:27,116 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 10:29:27] 2025-07-28 14:29:27,116 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 10:29:27] 2025-07-28 14:29:27,116 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 10:29:27] 2025-07-28 14:29:27,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 10:29:27] 2025-07-28 14:29:27,116 | INFO     | [monitor] control thread has ended
[2025-07-28 10:29:27] 2025-07-28 14:29:27,341 [wrapper] ==== pilot stdout END ====
[2025-07-28 10:29:27] 2025-07-28 14:29:27,345 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 10:29:27] 2025-07-28 14:29:27,350 [wrapper] pilotpid: 3761542
[2025-07-28 10:29:27] 2025-07-28 14:29:27,354 [wrapper] Pilot exit status: 0
[2025-07-28 10:29:27] 2025-07-28 14:29:27,373 [wrapper] pandaids: 6748687008
[2025-07-28 10:29:27] 2025-07-28 14:29:27,435 [wrapper] cleanup supervisor_pilot 4016637 3761543
[2025-07-28 10:29:27] 2025-07-28 14:29:27,439 [wrapper] Test setup, not cleaning
[2025-07-28 10:29:27] 2025-07-28 14:29:27,442 [wrapper] apfmon messages muted
[2025-07-28 10:29:27] 2025-07-28 14:29:27,445 [wrapper] ==== wrapper stdout END ====
[2025-07-28 10:29:27] 2025-07-28 14:29:27,448 [wrapper] ==== wrapper stderr END ====
[2025-07-28 10:29:27]  *** Error codes and diagnostics ***
[2025-07-28 10:29:27]     "exeErrorCode": 0,
[2025-07-28 10:29:27]     "exeErrorDiag": "",
[2025-07-28 10:29:27]     "pilotErrorCode": 0,
[2025-07-28 10:29:27]     "pilotErrorDiag": "",
[2025-07-28 10:29:27]  *** Listing of results directory ***
[2025-07-28 10:29:27] total 351460
[2025-07-28 10:29:27] -rwx------. 1 boincer umatlas     36292 Jul 28 09:04 runpilot2-wrapper.sh
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 09:04 queuedata.json
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 09:04 pilot3.tar.gz
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas       100 Jul 28 09:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 10:29:27] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 09:04 run_atlas
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas       105 Jul 28 09:04 job.xml
[2025-07-28 10:29:27] -rw-r--r--. 2 boincer umatlas 148209731 Jul 28 09:04 EVNT.45743347._001101.pool.root.1
[2025-07-28 10:29:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 09:04 start_atlas.sh
[2025-07-28 10:29:27] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 09:04 shared
[2025-07-28 10:29:27] -rw-r--r--. 2 boincer umatlas    542890 Jul 28 09:04 input.tar.gz
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas         0 Jul 28 09:04 boinc_lockfile
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas      2561 Jul 28 09:04 pandaJob.out
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas    977006 Jul 28 09:05 agis_schedconf.cvmfs.json
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas   1593052 Jul 28 09:05 agis_ddmendpoints.agis.ALL.json
[2025-07-28 10:29:27] drwx------. 4 boincer umatlas      4096 Jul 28 09:05 pilot3
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas      6843 Jul 28 10:27 init_data.xml
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas 206108360 Jul 28 10:28 HITS.45743349._056431.pool.root.1
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas       530 Jul 28 10:28 boinc_task_state.xml
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas      1039 Jul 28 10:28 memory_monitor_summary.json
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas    368052 Jul 28 10:28 log.45743349._056431.job.log.tgz.1
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas      7818 Jul 28 10:28 heartbeat.json
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 10:29 boinc_mmap_file
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas        27 Jul 28 10:29 wrapper_checkpoint.txt
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas        95 Jul 28 10:29 pilot_heartbeat.json
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas       823 Jul 28 10:29 pilotlog.txt
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas    485600 Jul 28 10:29 log.45743349._056431.job.log.1
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas       357 Jul 28 10:29 output.list
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas       620 Jul 28 10:29 runtime_log
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas    870400 Jul 28 10:29 result.tar.gz
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 10:29 runtime_log.err
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas       654 Jul 28 10:29 F6JNDmYhc07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFeWLDmKhcCMm.diag
[2025-07-28 10:29:27] -rw-r--r--. 1 boincer umatlas     22010 Jul 28 10:29 stderr.txt
[2025-07-28 10:29:27] HITS file was successfully produced:
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas 206108360 Jul 28 10:28 shared/HITS.pool.root.1
[2025-07-28 10:29:27]  *** Contents of shared directory: ***
[2025-07-28 10:29:27] total 347424
[2025-07-28 10:29:27] -rw-r--r--. 2 boincer umatlas 148209731 Jul 28 09:04 ATLAS.root_0
[2025-07-28 10:29:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 09:04 start_atlas.sh
[2025-07-28 10:29:27] -rw-r--r--. 2 boincer umatlas    542890 Jul 28 09:04 input.tar.gz
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas 206108360 Jul 28 10:28 HITS.pool.root.1
[2025-07-28 10:29:27] -rw-------. 1 boincer umatlas    870400 Jul 28 10:29 result.tar.gz
10:29:28 (3757965): run_atlas exited; CPU time 46323.508929
10:29:28 (3757965): called boinc_finish(0)

</stderr_txt>
]]>

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