Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
06:30:53 (23645): wrapper (7.7.26015): starting
06:30:53 (23645): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 06:30:53] Arguments: --nthreads 12
[2025-07-28 06:30:53] Threads: 12
[2025-07-28 06:30:53] Checking for CVMFS
[2025-07-28 06:30:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 06:30:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 06:30:53] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 06:30:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 06:30:53] 2.11.2.0 2979 113338 90912 148845 3 1 15332181 20275201 1 130560 0 39461041 99.972 9658375 10513 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 06:30:53] CVMFS is ok
[2025-07-28 06:30:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 06:30:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 06:30:53] Further information can be found at the LHC@home message board.
[2025-07-28 06:30:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 06:30:53] Checking for apptainer binary...
[2025-07-28 06:30:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 06:30:53] Running /usr/bin/apptainer --version
[2025-07-28 06:30:53] apptainer version 1.3.2-1.el7
[2025-07-28 06:30:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 06:30:55] c-205-21.aglt2.org
[2025-07-28 06:30:55] apptainer works
[2025-07-28 06:30:55] Set ATHENA_PROC_NUMBER=12
[2025-07-28 06:30:55] Set ATHENA_CORE_NUMBER=12
[2025-07-28 06:30:55] Starting ATLAS job with PandaID=6748588912
[2025-07-28 06:30:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 08:02:04]  *** The last 200 lines of the pilot log: ***
[2025-07-28 08:02:04]  is_tar=False
[2025-07-28 08:02:04]  lfn=log.45759518._000128.job.log.tgz.1
[2025-07-28 08:02:04]  mtime=0
[2025-07-28 08:02:04]  protocol_id=None
[2025-07-28 08:02:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 08:02:04]  replicas=None
[2025-07-28 08:02:04]  scope=mc23_13p6TeV
[2025-07-28 08:02:04]  status=None
[2025-07-28 08:02:04]  status_code=0
[2025-07-28 08:02:04]  storage_token=
[2025-07-28 08:02:04]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748588912/log.45759518._000128.job.log.tgz.1
[2025-07-28 08:02:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/b6/log.45759518._000128.job.log.tgz.1
[2025-07-28 08:02:04]  workdir=None
[2025-07-28 08:02:04] ]
[2025-07-28 08:02:04] 2025-07-28 12:01:23,697 | INFO     | transferring file log.45759518._000128.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748588912/log.45759518._000128.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 08:02:04] 2025-07-28 12:01:23,698 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748588912/log.45759518._000128.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759518._000128.job
[2025-07-28 08:02:04] 2025-07-28 12:01:23,720 | INFO     | adding to output.list: log.45759518._000128.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/b6/log.45759518._000128.job.log.tg
[2025-07-28 08:02:04] 2025-07-28 12:01:23,721 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 08:02:04] 2025-07-28 12:01:23,721 | INFO     | summary of transferred files:
[2025-07-28 08:02:04] 2025-07-28 12:01:23,721 | INFO     |  -- lfn=log.45759518._000128.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 08:02:04] 2025-07-28 12:01:23,721 | INFO     | stage-out finished correctly
[2025-07-28 08:02:04] 2025-07-28 12:01:23,806 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 08:02:04] 2025-07-28 12:01:25,483 | INFO     | monitor loop #407: job 0:6748588912 is in state 'finished'
[2025-07-28 08:02:04] 2025-07-28 12:01:25,483 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 08:02:04] 2025-07-28 12:01:25,675 | INFO     | PID=27369 has CPU usage=6.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 08:02:04] 2025-07-28 12:01:26,061 | INFO     | job 6748588912 has state=finished
[2025-07-28 08:02:04] 2025-07-28 12:01:26,061 | INFO     | preparing for final server update for job 6748588912 in state='finished'
[2025-07-28 08:02:04] 2025-07-28 12:01:26,062 | INFO     | this job has now completed (state=finished)
[2025-07-28 08:02:04] 2025-07-28 12:01:26,062 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 08:02:04] 2025-07-28 12:01:26,062 | INFO     | log transfer has been attempted: DONE
[2025-07-28 08:02:04] 2025-07-28 12:01:26,062 | INFO     | job 6748588912 has finished - writing final server update
[2025-07-28 08:02:04] 2025-07-28 12:01:26,063 | INFO     | total number of processed events: 400 (read)
[2025-07-28 08:02:04] 2025-07-28 12:01:26,064 | INFO     | executing command: lscpu
[2025-07-28 08:02:04] 2025-07-28 12:01:26,091 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 08:02:04] 2025-07-28 12:01:27,985 | INFO     | monitor loop #408: job 0:6748588912 is in state 'finished'
[2025-07-28 08:02:04] 2025-07-28 12:01:27,995 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 08:02:04] 2025-07-28 12:01:30,497 | INFO     | monitor loop #409: job 0:6748588912 is in state 'finished'
[2025-07-28 08:02:04] 2025-07-28 12:01:30,498 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 08:02:04] 2025-07-28 12:01:31,292 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 08:02:04] 2025-07-28 12:01:31,296 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-28 08:02:04] 2025-07-28 12:01:31,298 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748588912/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 08:02:04] 2025-07-28 12:01:31,300 | INFO     | extracted standard info from prmon json
[2025-07-28 08:02:04] 2025-07-28 12:01:31,300 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 08:02:04] 2025-07-28 12:01:31,300 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 08:02:04] 2025-07-28 12:01:31,300 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 08:02:04] 2025-07-28 12:01:31,300 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 08:02:04] 2025-07-28 12:01:31,302 | INFO     | fitting pss+swap vs Time
[2025-07-28 08:02:04] 2025-07-28 12:01:31,302 | INFO     | sum of square deviations: 170944600.5
[2025-07-28 08:02:04] 2025-07-28 12:01:31,302 | INFO     | sum of deviations: -10213896912.999998
[2025-07-28 08:02:04] 2025-07-28 12:01:31,303 | INFO     | mean x: 1753701475.5
[2025-07-28 08:02:04] 2025-07-28 12:01:31,303 | INFO     | mean y: 2883734.6341463416
[2025-07-28 08:02:04] 2025-07-28 12:01:31,303 | INFO     | -- intersect: 104786106103.40964
[2025-07-28 08:02:04] 2025-07-28 12:01:31,303 | INFO     | intersect: 104786106103.40964
[2025-07-28 08:02:04] 2025-07-28 12:01:31,303 | INFO     | chi2: 0.12477861771009542
[2025-07-28 08:02:04] 2025-07-28 12:01:31,303 | INFO     | -- intersect: 104786106103.40964
[2025-07-28 08:02:04] 2025-07-28 12:01:31,303 | INFO     | current memory leak: -59.75 B/s (using 82 data points, chi2=0.12)
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | could have reported an average CPU frequency of 2021 MHz (6 samples)
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | ..............................
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | . Timing measurements:
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | . get job = 0 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | . initial setup = 2 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | . payload setup = 9 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | . stage-in = 0 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | . payload execution = 5384 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,304 | INFO     | . stage-out = 0 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,305 | INFO     | . log creation = 0 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,305 | INFO     | ..............................
[2025-07-28 08:02:04] 2025-07-28 12:01:31,388 | INFO     | 
[2025-07-28 08:02:04] 2025-07-28 12:01:31,388 | INFO     | job summary report
[2025-07-28 08:02:04] 2025-07-28 12:01:31,388 | INFO     | --------------------------------------------------
[2025-07-28 08:02:04] 2025-07-28 12:01:31,388 | INFO     | PanDA job id: 6748588912
[2025-07-28 08:02:04] 2025-07-28 12:01:31,388 | INFO     | task id: 45759518
[2025-07-28 08:02:04] 2025-07-28 12:01:31,389 | INFO     | errors: (none)
[2025-07-28 08:02:04] 2025-07-28 12:01:31,389 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 08:02:04] 2025-07-28 12:01:31,389 | INFO     | pilot state: finished 
[2025-07-28 08:02:04] 2025-07-28 12:01:31,389 | INFO     | transexitcode: 0
[2025-07-28 08:02:04] 2025-07-28 12:01:31,389 | INFO     | exeerrorcode: 0
[2025-07-28 08:02:04] 2025-07-28 12:01:31,389 | INFO     | exeerrordiag: 
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | exitcode: 0
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | exitmsg: OK
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | cpuconsumptiontime: 59283 s
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | nevents: 400
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | neventsw: 0
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | pid: 1338
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | pgrp: 1338
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | corecount: 12
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | event service: False
[2025-07-28 08:02:04] 2025-07-28 12:01:31,390 | INFO     | sizes: {0: 2397240, 1: 2397439, 6: 2397701, 12: 2397729, 5398: 2424181, 5399: 2433363, 5407: 2433501}
[2025-07-28 08:02:04] 2025-07-28 12:01:31,391 | INFO     | --------------------------------------------------
[2025-07-28 08:02:04] 2025-07-28 12:01:31,391 | INFO     | 
[2025-07-28 08:02:04] 2025-07-28 12:01:31,391 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 08:02:04] 2025-07-28 12:01:31,413 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,414 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,414 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,414 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,414 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,414 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,415 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,415 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,415 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,415 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,415 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,415 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,416 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,416 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,416 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,416 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,416 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,416 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 08:02:04] 2025-07-28 12:01:31,417 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,417 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 08:02:04] 2025-07-28 12:01:31,417 | INFO     | job 6748588912 has completed (purged errors)
[2025-07-28 08:02:04] 2025-07-28 12:01:31,417 | INFO     | overall cleanup function is called
[2025-07-28 08:02:04] 2025-07-28 12:01:32,426 | INFO     | --- collectZombieJob: --- 10, [1338]
[2025-07-28 08:02:04] 2025-07-28 12:01:32,426 | INFO     | zombie collector waiting for pid 1338
[2025-07-28 08:02:04] 2025-07-28 12:01:32,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 08:02:04] 2025-07-28 12:01:32,426 | INFO     | collected zombie processes
[2025-07-28 08:02:04] 2025-07-28 12:01:32,426 | INFO     | will attempt to kill all subprocesses of pid=1338
[2025-07-28 08:02:04] 2025-07-28 12:01:32,518 | INFO     | process IDs to be killed: [1338] (in reverse order)
[2025-07-28 08:02:04] 2025-07-28 12:01:32,571 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 08:02:04] 2025-07-28 12:01:32,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 08:02:04] 2025-07-28 12:01:32,575 | INFO     | did not find any defunct processes belonging to 1338
[2025-07-28 08:02:04] 2025-07-28 12:01:32,578 | INFO     | did not find any defunct processes belonging to 1338
[2025-07-28 08:02:04] 2025-07-28 12:01:32,579 | INFO     | ready for new job
[2025-07-28 08:02:04] 2025-07-28 12:01:32,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 08:02:04] 2025-07-28 12:01:32,580 | INFO     | ***************************************
[2025-07-28 08:02:04] 2025-07-28 12:01:32,580 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 08:02:04] 2025-07-28 12:01:32,581 | INFO     | ***************************************
[2025-07-28 08:02:04] 2025-07-28 12:01:32,581 | INFO     | 
[2025-07-28 08:02:04] 2025-07-28 12:01:32,581 | INFO     | architecture information:
[2025-07-28 08:02:04] 2025-07-28 12:01:32,582 | INFO     | executing command: cat /etc/os-release
[2025-07-28 08:02:04] 2025-07-28 12:01:32,597 | INFO     | cat /etc/os-release:
[2025-07-28 08:02:04] NAME="CentOS Linux"
[2025-07-28 08:02:04] VERSION="7 (Core)"
[2025-07-28 08:02:04] ID="centos"
[2025-07-28 08:02:04] ID_LIKE="rhel fedora"
[2025-07-28 08:02:04] VERSION_ID="7"
[2025-07-28 08:02:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 08:02:04] ANSI_COLOR="0;31"
[2025-07-28 08:02:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 08:02:04] HOME_URL="https://www.centos.org/"
[2025-07-28 08:02:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 08:02:04] 
[2025-07-28 08:02:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 08:02:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 08:02:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 08:02:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 08:02:04] 
[2025-07-28 08:02:04] 2025-07-28 12:01:32,597 | INFO     | ***************************************
[2025-07-28 08:02:04] 2025-07-28 12:01:33,100 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 08:02:04] 2025-07-28 12:01:33,117 | INFO     | sufficient remaining disk space (29356982272 B)
[2025-07-28 08:02:04] 2025-07-28 12:01:33,117 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 08:02:04] 2025-07-28 12:01:33,117 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 08:02:04] 2025-07-28 12:01:33,117 | INFO     | update_server=False
[2025-07-28 08:02:04] 2025-07-28 12:01:33,117 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 08:02:04] 2025-07-28 12:01:33,118 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:02:04] 2025-07-28 12:01:33,334 | INFO     | all data control threads have been joined
[2025-07-28 08:02:04] 2025-07-28 12:01:33,489 | INFO     | all job control threads have been joined
[2025-07-28 08:02:04] 2025-07-28 12:01:33,999 | INFO     | all payload control threads have been joined
[2025-07-28 08:02:04] 2025-07-28 12:01:34,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:02:04] 2025-07-28 12:01:34,006 | INFO     | aborting loop
[2025-07-28 08:02:04] 2025-07-28 12:01:34,123 | INFO     | [job] retrieve thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:34,123 | INFO     | [job] queue monitor thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:34,131 | INFO     | [payload] failed_post thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:34,322 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 08:02:04] 2025-07-28 12:01:34,340 | INFO     | [data] control thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:34,394 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 08:02:04] 2025-07-28 12:01:34,409 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:34,489 | INFO     | [data] copytool_in thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:34,495 | INFO     | [job] control thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:35,004 | INFO     | [payload] control thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:35,011 | INFO     | [job] job monitor thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:35,192 | INFO     | [payload] validate_post thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:35,196 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:35,197 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:35,209 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:35,210 | INFO     | [job] validate thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:36,328 | INFO     | [data] copytool_out thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:38,400 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 08:02:04] 2025-07-28 12:01:40,121 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216324003648)>', '<ExcThread(monitor, started 140215289104128)>']
[2025-07-28 08:02:04] 2025-07-28 12:01:45,147 | INFO     | all workflow threads have been joined
[2025-07-28 08:02:04] 2025-07-28 12:01:45,147 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 08:02:04] 2025-07-28 12:01:45,147 | INFO     | traces error code: 0
[2025-07-28 08:02:04] 2025-07-28 12:01:45,147 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 08:02:04] 2025-07-28 12:02:03,887 | INFO     | PID=27369 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 08:02:04] 2025-07-28 12:02:03,887 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 08:02:04] 2025-07-28 12:02:03,887 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 08:02:04] 2025-07-28 12:02:03,887 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 08:02:04] 2025-07-28 12:02:03,887 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 08:02:04] 2025-07-28 12:02:03,888 | INFO     | [monitor] control thread has ended
[2025-07-28 08:02:04] 2025-07-28 12:02:03,975 [wrapper] ==== pilot stdout END ====
[2025-07-28 08:02:04] 2025-07-28 12:02:03,979 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 08:02:04] 2025-07-28 12:02:03,983 [wrapper] pilotpid: 27369
[2025-07-28 08:02:04] 2025-07-28 12:02:03,987 [wrapper] Pilot exit status: 0
[2025-07-28 08:02:04] 2025-07-28 12:02:04,003 [wrapper] pandaids: 6748588912
[2025-07-28 08:02:04] 2025-07-28 12:02:04,045 [wrapper] cleanup supervisor_pilot 29174 27370
[2025-07-28 08:02:04] 2025-07-28 12:02:04,049 [wrapper] Test setup, not cleaning
[2025-07-28 08:02:04] 2025-07-28 12:02:04,053 [wrapper] apfmon messages muted
[2025-07-28 08:02:04] 2025-07-28 12:02:04,057 [wrapper] ==== wrapper stdout END ====
[2025-07-28 08:02:04] 2025-07-28 12:02:04,061 [wrapper] ==== wrapper stderr END ====
[2025-07-28 08:02:04]  *** Error codes and diagnostics ***
[2025-07-28 08:02:04]     "exeErrorCode": 0,
[2025-07-28 08:02:04]     "exeErrorDiag": "",
[2025-07-28 08:02:04]     "pilotErrorCode": 0,
[2025-07-28 08:02:04]     "pilotErrorDiag": "",
[2025-07-28 08:02:04]  *** Listing of results directory ***
[2025-07-28 08:02:04] total 412440
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 06:00 pilot3.tar.gz
[2025-07-28 08:02:04] -rwx------ 1 boincer umatlas     36292 Jul 28 06:30 runpilot2-wrapper.sh
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 06:30 queuedata.json
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas       100 Jul 28 06:30 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 08:02:04] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 06:30 run_atlas
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas       105 Jul 28 06:30 job.xml
[2025-07-28 08:02:04] -rw-r--r-- 2 boincer umatlas 244269775 Jul 28 06:30 EVNT.45759511._000002.pool.root.1
[2025-07-28 08:02:04] drwxrwx--x 2 boincer umatlas      4096 Jul 28 06:30 shared
[2025-07-28 08:02:04] -rw-r--r-- 2 boincer umatlas    542888 Jul 28 06:30 input.tar.gz
[2025-07-28 08:02:04] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 06:30 start_atlas.sh
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas         0 Jul 28 06:30 boinc_lockfile
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas      2554 Jul 28 06:30 pandaJob.out
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas    978460 Jul 28 06:31 agis_schedconf.cvmfs.json
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas   1593052 Jul 28 06:31 agis_ddmendpoints.agis.ALL.json
[2025-07-28 08:02:04] drwx------ 4 boincer umatlas      4096 Jul 28 06:31 pilot3
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas      5867 Jul 28 07:58 init_data.xml
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas 172435744 Jul 28 08:00 HITS.45759518._000128.pool.root.1
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas       529 Jul 28 08:00 boinc_task_state.xml
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas        95 Jul 28 08:01 pilot_heartbeat.json
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas      1045 Jul 28 08:01 memory_monitor_summary.json
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas    369003 Jul 28 08:01 log.45759518._000128.job.log.tgz.1
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas      7842 Jul 28 08:01 heartbeat.json
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas        27 Jul 28 08:01 wrapper_checkpoint.txt
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 08:01 boinc_mmap_file
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas       745 Jul 28 08:02 pilotlog.txt
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas    510491 Jul 28 08:02 log.45759518._000128.job.log.1
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas       357 Jul 28 08:02 output.list
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas       620 Jul 28 08:02 runtime_log
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas    901120 Jul 28 08:02 result.tar.gz
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 08:02 runtime_log.err
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas       659 Jul 28 08:02 NXwMDmlIa07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmVdWLDmDfKg4n.diag
[2025-07-28 08:02:04] -rw-r--r-- 1 boincer umatlas     21685 Jul 28 08:02 stderr.txt
[2025-07-28 08:02:04] HITS file was successfully produced:
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas 172435744 Jul 28 08:00 shared/HITS.pool.root.1
[2025-07-28 08:02:04]  *** Contents of shared directory: ***
[2025-07-28 08:02:04] total 408376
[2025-07-28 08:02:04] -rw-r--r-- 2 boincer umatlas 244269775 Jul 28 06:30 ATLAS.root_0
[2025-07-28 08:02:04] -rw-r--r-- 2 boincer umatlas    542888 Jul 28 06:30 input.tar.gz
[2025-07-28 08:02:04] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 06:30 start_atlas.sh
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas 172435744 Jul 28 08:00 HITS.pool.root.1
[2025-07-28 08:02:04] -rw------- 1 boincer umatlas    901120 Jul 28 08:02 result.tar.gz
08:02:06 (23645): run_atlas exited; CPU time 59257.267754
08:02:06 (23645): called boinc_finish(0)

</stderr_txt>
]]>

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