Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:52:56 (2733363): wrapper (7.7.26015): starting
05:52:56 (2733363): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 05:52:56] Arguments: --nthreads 8
[2025-07-28 05:52:56] Threads: 8
[2025-07-28 05:52:56] Checking for CVMFS
[2025-07-28 05:52:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 05:52:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 05:52:57] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 05:52:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 05:52:57] 2.13.1.0 1602499 14213 236932 148843 0 348 27763757 40960001 12407 16776704 0 82882599 99.747 82324433 35745 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 05:52:57] CVMFS is ok
[2025-07-28 05:52:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 05:52:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 05:52:57] Further information can be found at the LHC@home message board.
[2025-07-28 05:52:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 05:52:57] Checking for apptainer binary...
[2025-07-28 05:52:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 05:52:57] Running /usr/bin/apptainer --version
[2025-07-28 05:52:57] apptainer version 1.4.1-1.el9
[2025-07-28 05:52:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 05:52:57] c-212-17.aglt2.org
[2025-07-28 05:52:57] apptainer works
[2025-07-28 05:52:57] Set ATHENA_PROC_NUMBER=8
[2025-07-28 05:52:57] Set ATHENA_CORE_NUMBER=8
[2025-07-28 05:52:57] Starting ATLAS job with PandaID=6745066969
[2025-07-28 05:52:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 07:23:29]  *** The last 200 lines of the pilot log: ***
[2025-07-28 07:23:29]  lfn=log.45743349._029325.job.log.tgz.1
[2025-07-28 07:23:29]  mtime=0
[2025-07-28 07:23:29]  protocol_id=None
[2025-07-28 07:23:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 07:23:29]  replicas=None
[2025-07-28 07:23:29]  scope=mc23_13p6TeV
[2025-07-28 07:23:29]  status=None
[2025-07-28 07:23:29]  status_code=0
[2025-07-28 07:23:29]  storage_token=
[2025-07-28 07:23:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745066969/log.45743349._029325.job.log.tgz.1
[2025-07-28 07:23:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/5a/log.45743349._029325.job.log.tgz.1
[2025-07-28 07:23:29]  workdir=None
[2025-07-28 07:23:29] ]
[2025-07-28 07:23:29] 2025-07-28 11:22:48,859 | INFO     | transferring file log.45743349._029325.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745066969/log.45743349._029325.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 07:23:29] 2025-07-28 11:22:48,859 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745066969/log.45743349._029325.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._029325.job
[2025-07-28 07:23:29] 2025-07-28 11:22:48,886 | INFO     | adding to output.list: log.45743349._029325.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/5a/log.45743349._029325.job.log.tg
[2025-07-28 07:23:29] 2025-07-28 11:22:48,890 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 07:23:29] 2025-07-28 11:22:48,890 | INFO     | summary of transferred files:
[2025-07-28 07:23:29] 2025-07-28 11:22:48,890 | INFO     |  -- lfn=log.45743349._029325.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 07:23:29] 2025-07-28 11:22:48,890 | INFO     | stage-out finished correctly
[2025-07-28 07:23:29] 2025-07-28 11:22:50,351 | INFO     | monitor loop #393: job 0:6745066969 is in state 'finished'
[2025-07-28 07:23:29] 2025-07-28 11:22:50,351 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 07:23:29] 2025-07-28 11:22:50,684 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 07:23:29] 2025-07-28 11:22:50,761 | INFO     | job 6745066969 has state=finished
[2025-07-28 07:23:29] 2025-07-28 11:22:50,761 | INFO     | preparing for final server update for job 6745066969 in state='finished'
[2025-07-28 07:23:29] 2025-07-28 11:22:50,762 | INFO     | this job has now completed (state=finished)
[2025-07-28 07:23:29] 2025-07-28 11:22:50,762 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 07:23:29] 2025-07-28 11:22:50,762 | INFO     | log transfer has been attempted: DONE
[2025-07-28 07:23:29] 2025-07-28 11:22:50,762 | INFO     | job 6745066969 has finished - writing final server update
[2025-07-28 07:23:29] 2025-07-28 11:22:50,762 | INFO     | total number of processed events: 400 (read)
[2025-07-28 07:23:29] 2025-07-28 11:22:50,764 | INFO     | executing command: lscpu
[2025-07-28 07:23:29] 2025-07-28 11:22:50,841 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 07:23:29] 2025-07-28 11:22:52,856 | INFO     | monitor loop #394: job 0:6745066969 is in state 'finished'
[2025-07-28 07:23:29] 2025-07-28 11:22:52,856 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 07:23:29] 2025-07-28 11:22:55,360 | INFO     | monitor loop #395: job 0:6745066969 is in state 'finished'
[2025-07-28 07:23:29] 2025-07-28 11:22:55,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 07:23:29] 2025-07-28 11:22:56,517 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 07:23:29] 2025-07-28 11:22:56,530 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3118.821645833334
[2025-07-28 07:23:29] 2025-07-28 11:22:56,544 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745066969/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 07:23:29] 2025-07-28 11:22:56,545 | INFO     | extracted standard info from prmon json
[2025-07-28 07:23:29] 2025-07-28 11:22:56,545 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 07:23:29] 2025-07-28 11:22:56,545 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 07:23:29] 2025-07-28 11:22:56,546 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 07:23:29] 2025-07-28 11:22:56,546 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 07:23:29] 2025-07-28 11:22:56,547 | INFO     | fitting pss+swap vs Time
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | sum of square deviations: 164765880.0
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | sum of deviations: -8793431454.0
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | mean x: 1753699172.0
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | mean y: 2613533.3703703703
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | -- intersect: 93596223204.97566
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | intersect: 93596223204.97566
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | chi2: 0.1396456254573754
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | -- intersect: 93596223204.97566
[2025-07-28 07:23:29] 2025-07-28 11:22:56,548 | INFO     | current memory leak: -53.37 B/s (using 81 data points, chi2=0.14)
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | could have reported an average CPU frequency of 3114 MHz (6 samples)
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | ..............................
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . Timing measurements:
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . get job = 0 s
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . initial setup = 3 s
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . payload setup = 9 s
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . stage-in = 0 s
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . payload execution = 5343 s
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . stage-out = 0 s
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | . log creation = 0 s
[2025-07-28 07:23:29] 2025-07-28 11:22:56,549 | INFO     | ..............................
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | 
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | job summary report
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | --------------------------------------------------
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | PanDA job id: 6745066969
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | task id: 45743349
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | errors: (none)
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | pilot state: finished 
[2025-07-28 07:23:29] 2025-07-28 11:22:57,106 | INFO     | transexitcode: 0
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | exeerrorcode: 0
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | exeerrordiag: 
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | exitcode: 0
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | exitmsg: OK
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | cpuconsumptiontime: 39673 s
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | nevents: 400
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | neventsw: 0
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | pid: 2753947
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | pgrp: 2753947
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | corecount: 8
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | event service: False
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | sizes: {0: 2397475, 6: 2397737, 11: 2397765, 5357: 2424074, 5358: 2433072, 5360: 2433128, 5366: 2433450}
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | --------------------------------------------------
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | 
[2025-07-28 07:23:29] 2025-07-28 11:22:57,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 07:23:29] 2025-07-28 11:22:57,132 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,133 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 07:23:29] 2025-07-28 11:22:57,134 | INFO     | job 6745066969 has completed (purged errors)
[2025-07-28 07:23:29] 2025-07-28 11:22:57,135 | INFO     | overall cleanup function is called
[2025-07-28 07:23:29] 2025-07-28 11:22:58,144 | INFO     | --- collectZombieJob: --- 10, [2753947]
[2025-07-28 07:23:29] 2025-07-28 11:22:58,144 | INFO     | zombie collector waiting for pid 2753947
[2025-07-28 07:23:29] 2025-07-28 11:22:58,145 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 07:23:29] 2025-07-28 11:22:58,145 | INFO     | collected zombie processes
[2025-07-28 07:23:29] 2025-07-28 11:22:58,145 | INFO     | will attempt to kill all subprocesses of pid=2753947
[2025-07-28 07:23:29] 2025-07-28 11:22:58,596 | INFO     | process IDs to be killed: [2753947] (in reverse order)
[2025-07-28 07:23:29] 2025-07-28 11:22:58,739 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 07:23:29] 2025-07-28 11:22:58,739 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 07:23:29] 2025-07-28 11:22:58,758 | INFO     | did not find any defunct processes belonging to 2753947
[2025-07-28 07:23:29] 2025-07-28 11:22:58,777 | INFO     | did not find any defunct processes belonging to 2753947
[2025-07-28 07:23:29] 2025-07-28 11:22:58,778 | INFO     | ready for new job
[2025-07-28 07:23:29] 2025-07-28 11:22:58,779 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 07:23:29] 2025-07-28 11:22:58,781 | INFO     | ***************************************
[2025-07-28 07:23:29] 2025-07-28 11:22:58,781 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 07:23:29] 2025-07-28 11:22:58,781 | INFO     | ***************************************
[2025-07-28 07:23:29] 2025-07-28 11:22:58,782 | INFO     | 
[2025-07-28 07:23:29] 2025-07-28 11:22:58,787 | INFO     | architecture information:
[2025-07-28 07:23:29] 2025-07-28 11:22:58,788 | INFO     | executing command: cat /etc/os-release
[2025-07-28 07:23:29] 2025-07-28 11:22:58,808 | INFO     | cat /etc/os-release:
[2025-07-28 07:23:29] NAME="CentOS Linux"
[2025-07-28 07:23:29] VERSION="7 (Core)"
[2025-07-28 07:23:29] ID="centos"
[2025-07-28 07:23:29] ID_LIKE="rhel fedora"
[2025-07-28 07:23:29] VERSION_ID="7"
[2025-07-28 07:23:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 07:23:29] ANSI_COLOR="0;31"
[2025-07-28 07:23:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 07:23:29] HOME_URL="https://www.centos.org/"
[2025-07-28 07:23:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 07:23:29] 
[2025-07-28 07:23:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 07:23:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 07:23:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 07:23:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 07:23:29] 
[2025-07-28 07:23:29] 2025-07-28 11:22:58,808 | INFO     | ***************************************
[2025-07-28 07:23:29] 2025-07-28 11:22:59,311 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 07:23:29] 2025-07-28 11:22:59,331 | INFO     | sufficient remaining disk space (129278935040 B)
[2025-07-28 07:23:29] 2025-07-28 11:22:59,332 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 07:23:29] 2025-07-28 11:22:59,332 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 07:23:29] 2025-07-28 11:22:59,332 | INFO     | update_server=False
[2025-07-28 07:23:29] 2025-07-28 11:22:59,332 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 07:23:29] 2025-07-28 11:22:59,332 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:23:29] 2025-07-28 11:22:59,332 | INFO     | aborting loop
[2025-07-28 07:23:29] 2025-07-28 11:22:59,483 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 07:23:29] 2025-07-28 11:23:00,337 | INFO     | [job] retrieve thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:00,338 | INFO     | [job] job monitor thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:00,401 | INFO     | all data control threads have been joined
[2025-07-28 07:23:29] 2025-07-28 11:23:00,613 | INFO     | all payload control threads have been joined
[2025-07-28 07:23:29] 2025-07-28 11:23:00,665 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:00,734 | INFO     | all job control threads have been joined
[2025-07-28 07:23:29] 2025-07-28 11:23:01,195 | INFO     | [payload] failed_post thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,205 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 07:23:29] 2025-07-28 11:23:01,314 | INFO     | [job] validate thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,407 | INFO     | [data] control thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,489 | INFO     | [data] copytool_out thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,619 | INFO     | [payload] control thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,636 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:23:29] 2025-07-28 11:23:01,654 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,716 | INFO     | [data] copytool_in thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,740 | INFO     | [job] control thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,772 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:01,838 | INFO     | [payload] validate_post thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:02,642 | INFO     | [job] queue monitor thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:05,276 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 07:23:29] 2025-07-28 11:23:05,351 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139812803716928)>', '<ExcThread(monitor, started 139812182943488)>']
[2025-07-28 07:23:29] 2025-07-28 11:23:08,033 [wrapper] supervise_pilot (15 min periods counter: 7)
[2025-07-28 07:23:29] 2025-07-28 11:23:10,376 | INFO     | all workflow threads have been joined
[2025-07-28 07:23:29] 2025-07-28 11:23:10,377 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 07:23:29] 2025-07-28 11:23:10,377 | INFO     | traces error code: 0
[2025-07-28 07:23:29] 2025-07-28 11:23:10,378 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 07:23:29] 2025-07-28 11:23:28,816 | INFO     | PID=2739245 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 07:23:29] 2025-07-28 11:23:28,816 | INFO     | .. there are 14 such processes running
[2025-07-28 07:23:29] 2025-07-28 11:23:28,817 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 07:23:29] 2025-07-28 11:23:28,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 07:23:29] 2025-07-28 11:23:28,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 07:23:29] 2025-07-28 11:23:28,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 07:23:29] 2025-07-28 11:23:28,817 | INFO     | [monitor] control thread has ended
[2025-07-28 07:23:29] 2025-07-28 11:23:28,989 [wrapper] ==== pilot stdout END ====
[2025-07-28 07:23:29] 2025-07-28 11:23:28,993 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 07:23:29] 2025-07-28 11:23:28,996 [wrapper] pilotpid: 2739245
[2025-07-28 07:23:29] 2025-07-28 11:23:28,999 [wrapper] Pilot exit status: 0
[2025-07-28 07:23:29] 2025-07-28 11:23:29,014 [wrapper] pandaids: 6745066969
[2025-07-28 07:23:29] 2025-07-28 11:23:29,117 [wrapper] cleanup supervisor_pilot 3330935 2739246
[2025-07-28 07:23:29] 2025-07-28 11:23:29,120 [wrapper] Test setup, not cleaning
[2025-07-28 07:23:29] 2025-07-28 11:23:29,125 [wrapper] apfmon messages muted
[2025-07-28 07:23:29] 2025-07-28 11:23:29,129 [wrapper] ==== wrapper stdout END ====
[2025-07-28 07:23:29] 2025-07-28 11:23:29,132 [wrapper] ==== wrapper stderr END ====
[2025-07-28 07:23:29]  *** Error codes and diagnostics ***
[2025-07-28 07:23:29]     "exeErrorCode": 0,
[2025-07-28 07:23:29]     "exeErrorDiag": "",
[2025-07-28 07:23:29]     "pilotErrorCode": 0,
[2025-07-28 07:23:29]     "pilotErrorDiag": "",
[2025-07-28 07:23:29]  *** Listing of results directory ***
[2025-07-28 07:23:29] total 396868
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 20:06 pilot3.tar.gz
[2025-07-28 07:23:29] -rwx------. 1 boincer umatlas     36292 Jul 25 20:17 runpilot2-wrapper.sh
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 20:17 queuedata.json
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas       100 Jul 28 05:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 07:23:29] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 05:52 run_atlas
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas       105 Jul 28 05:52 job.xml
[2025-07-28 07:23:29] -rw-r--r--. 2 boincer umatlas 187035033 Jul 28 05:52 EVNT.45743347._001646.pool.root.1
[2025-07-28 07:23:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 05:52 start_atlas.sh
[2025-07-28 07:23:29] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 05:52 shared
[2025-07-28 07:23:29] -rw-r--r--. 2 boincer umatlas    542900 Jul 28 05:52 input.tar.gz
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas         0 Jul 28 05:52 boinc_lockfile
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas      2563 Jul 28 05:52 pandaJob.out
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas    978460 Jul 28 05:53 agis_schedconf.cvmfs.json
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas   1593052 Jul 28 05:53 agis_ddmendpoints.agis.ALL.json
[2025-07-28 07:23:29] drwx------. 4 boincer umatlas      4096 Jul 28 05:53 pilot3
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas      6943 Jul 28 07:19 init_data.xml
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas 213805085 Jul 28 07:22 HITS.45743349._029325.pool.root.1
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas       529 Jul 28 07:22 boinc_task_state.xml
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas      1034 Jul 28 07:22 memory_monitor_summary.json
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas    316063 Jul 28 07:22 log.45743349._029325.job.log.tgz.1
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas      7770 Jul 28 07:22 heartbeat.json
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 07:23 boinc_mmap_file
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas        27 Jul 28 07:23 wrapper_checkpoint.txt
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas       823 Jul 28 07:23 pilotlog.txt
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas        95 Jul 28 07:23 pilot_heartbeat.json
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas    522752 Jul 28 07:23 log.45743349._029325.job.log.1
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas       357 Jul 28 07:23 output.list
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas       620 Jul 28 07:23 runtime_log
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas    860160 Jul 28 07:23 result.tar.gz
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas       653 Jul 28 07:23 rv7NDmrmhz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmtozKDmLlcBqn.diag
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 07:23 runtime_log.err
[2025-07-28 07:23:29] -rw-r--r--. 1 boincer umatlas     21660 Jul 28 07:23 stderr.txt
[2025-07-28 07:23:29] HITS file was successfully produced:
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas 213805085 Jul 28 07:22 shared/HITS.pool.root.1
[2025-07-28 07:23:29]  *** Contents of shared directory: ***
[2025-07-28 07:23:29] total 392844
[2025-07-28 07:23:29] -rw-r--r--. 2 boincer umatlas 187035033 Jul 28 05:52 ATLAS.root_0
[2025-07-28 07:23:29] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 05:52 start_atlas.sh
[2025-07-28 07:23:29] -rw-r--r--. 2 boincer umatlas    542900 Jul 28 05:52 input.tar.gz
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas 213805085 Jul 28 07:22 HITS.pool.root.1
[2025-07-28 07:23:29] -rw-------. 1 boincer umatlas    860160 Jul 28 07:23 result.tar.gz
07:23:30 (2733363): run_atlas exited; CPU time 39792.786794
07:23:30 (2733363): called boinc_finish(0)

</stderr_txt>
]]>

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