Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
05:35:47 (322247): wrapper (7.7.26015): starting
05:35:47 (322247): wrapper: running run_atlas (--nthreads 4)
[2025-07-28 05:35:47] Arguments: --nthreads 4
[2025-07-28 05:35:47] Threads: 4
[2025-07-28 05:35:47] Checking for CVMFS
[2025-07-28 05:35:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 05:35:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 05:35:48] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 05:35:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 05:35:48] 2.13.1.0 322385 0 25012 148843 4 1 3263801 4096001 0 130560 0 0 0.000 1291 2360 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.174:3128 1
[2025-07-28 05:35:48] CVMFS is ok
[2025-07-28 05:35:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 05:35:48] Checking for apptainer binary...
[2025-07-28 05:35:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 05:35:48] Running /usr/bin/apptainer --version
[2025-07-28 05:35:48] apptainer version 1.4.1
[2025-07-28 05:35:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 05:35:48] X-32-ubuntu
[2025-07-28 05:35:48] apptainer works
[2025-07-28 05:35:48] Set ATHENA_PROC_NUMBER=4
[2025-07-28 05:35:48] Set ATHENA_CORE_NUMBER=4
[2025-07-28 05:35:48] Starting ATLAS job with PandaID=6747413390
[2025-07-28 05:35:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 06:44:27]  *** The last 200 lines of the pilot log: ***
[2025-07-28 06:44:27]  status=None
[2025-07-28 06:44:27]  status_code=0
[2025-07-28 06:44:27]  storage_token=
[2025-07-28 06:44:27]  surl=/var/lib/boinc/slots/0/PanDA_Pilot-6747413390/log.45743349._050164.job.log.tgz.1
[2025-07-28 06:44:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/3d/log.45743349._050164.job.log.tgz.1
[2025-07-28 06:44:27]  workdir=None
[2025-07-28 06:44:27] ]
[2025-07-28 06:44:27] 2025-07-28 10:43:47,453 | INFO     | transferring file log.45743349._050164.job.log.tgz.1 from /var/lib/boinc/slots/0/PanDA_Pilot-6747413390/log.45743349._050164.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-07-28 06:44:27] 2025-07-28 10:43:47,453 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/0/PanDA_Pilot-6747413390/log.45743349._050164.job.log.tgz.1 /var/lib/boinc/slots/0/log.45743349._050164.job
[2025-07-28 06:44:27] 2025-07-28 10:43:47,464 | INFO     | adding to output.list: log.45743349._050164.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8c/3d/log.45743349._050164.job.log.tg
[2025-07-28 06:44:27] 2025-07-28 10:43:47,464 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 06:44:27] 2025-07-28 10:43:47,464 | INFO     | summary of transferred files:
[2025-07-28 06:44:27] 2025-07-28 10:43:47,464 | INFO     |  -- lfn=log.45743349._050164.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 06:44:27] 2025-07-28 10:43:47,464 | INFO     | stage-out finished correctly
[2025-07-28 06:44:27] 2025-07-28 10:43:49,060 | WARNING  | process 349559 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 06:44:27] 2025-07-28 10:43:49,060 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6747413390/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 06:44:27] 2025-07-28 10:43:49,136 | INFO     | number of running child processes to parent process 349559: 1
[2025-07-28 06:44:27] 2025-07-28 10:43:49,136 | INFO     | maximum number of monitored processes: 6
[2025-07-28 06:44:27] 2025-07-28 10:43:49,150 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 06:44:27] 2025-07-28 10:43:51,639 | INFO     | monitor loop #312: job 0:6747413390 is in state 'finished'
[2025-07-28 06:44:27] 2025-07-28 10:43:51,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 06:44:27] 2025-07-28 10:43:52,129 | INFO     | job 6747413390 has state=finished
[2025-07-28 06:44:27] 2025-07-28 10:43:52,129 | INFO     | preparing for final server update for job 6747413390 in state='finished'
[2025-07-28 06:44:27] 2025-07-28 10:43:52,129 | INFO     | this job has now completed (state=finished)
[2025-07-28 06:44:27] 2025-07-28 10:43:52,129 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 06:44:27] 2025-07-28 10:43:52,129 | INFO     | log transfer has been attempted: DONE
[2025-07-28 06:44:27] 2025-07-28 10:43:52,129 | INFO     | job 6747413390 has finished - writing final server update
[2025-07-28 06:44:27] 2025-07-28 10:43:52,129 | INFO     | total number of processed events: 400 (read)
[2025-07-28 06:44:27] 2025-07-28 10:43:52,130 | INFO     | executing command: lscpu
[2025-07-28 06:44:27] 2025-07-28 10:43:52,149 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 06:44:27] 2025-07-28 10:43:54,142 | INFO     | monitor loop #313: job 0:6747413390 is in state 'finished'
[2025-07-28 06:44:27] 2025-07-28 10:43:54,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 06:44:27] 2025-07-28 10:43:54,227 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 06:44:27] 2025-07-28 10:43:54,230 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3648.7680000000005
[2025-07-28 06:44:27] 2025-07-28 10:43:54,232 | INFO     | using path: /var/lib/boinc/slots/0/PanDA_Pilot-6747413390/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 06:44:27] 2025-07-28 10:43:54,233 | INFO     | extracted standard info from prmon json
[2025-07-28 06:44:27] 2025-07-28 10:43:54,233 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 06:44:27] 2025-07-28 10:43:54,233 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 06:44:27] 2025-07-28 10:43:54,233 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 06:44:27] 2025-07-28 10:43:54,233 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | fitting pss+swap vs Time
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | sum of square deviations: 66959395.0
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | sum of deviations: -3242791384.5
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | mean x: 1753697479.5
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | mean y: 2409850.95
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | -- intersect: 84932613858.0496
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | intersect: 84932613858.0496
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | chi2: 0.015433747467478212
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | -- intersect: 84932613858.0496
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | current memory leak: -48.43 B/s (using 60 data points, chi2=0.02)
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | could have reported an average CPU frequency of 3697 MHz (6 samples)
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | ..............................
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . Timing measurements:
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . get job = 0 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . initial setup = 2 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . payload setup = 3 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . stage-in = 0 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . payload execution = 4051 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . stage-out = 0 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,234 | INFO     | . log creation = 0 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,235 | INFO     | ..............................
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | 
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | job summary report
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | --------------------------------------------------
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | PanDA job id: 6747413390
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | task id: 45743349
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | errors: (none)
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | pilot state: finished 
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | transexitcode: 0
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | exeerrorcode: 0
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | exeerrordiag: 
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | exitcode: 0
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | exitmsg: OK
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | cpuconsumptiontime: 15631 s
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | nevents: 400
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | neventsw: 0
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | pid: 349559
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | pgrp: 349559
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | corecount: 4
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | event service: False
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | sizes: {0: 2397469, 2: 2397731, 11: 2397759, 4057: 2423748, 4058: 2432746, 4059: 2432802, 4064: 2433124}
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | --------------------------------------------------
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | 
[2025-07-28 06:44:27] 2025-07-28 10:43:54,613 | INFO     | executing command: ls -lF /var/lib/boinc/slots/0
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,626 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,627 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,627 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 06:44:27] 2025-07-28 10:43:54,627 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,627 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 06:44:27] 2025-07-28 10:43:54,627 | INFO     | job 6747413390 has completed (purged errors)
[2025-07-28 06:44:27] 2025-07-28 10:43:54,627 | INFO     | overall cleanup function is called
[2025-07-28 06:44:27] 2025-07-28 10:43:55,152 | INFO     | PID=330218 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 06:44:27] 2025-07-28 10:43:55,152 | INFO     | .. there are 3 such processes running
[2025-07-28 06:44:27] 2025-07-28 10:43:55,633 | INFO     | --- collectZombieJob: --- 10, [349559]
[2025-07-28 06:44:27] 2025-07-28 10:43:55,634 | INFO     | zombie collector waiting for pid 349559
[2025-07-28 06:44:27] 2025-07-28 10:43:55,634 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 06:44:27] 2025-07-28 10:43:55,634 | INFO     | collected zombie processes
[2025-07-28 06:44:27] 2025-07-28 10:43:55,634 | INFO     | will attempt to kill all subprocesses of pid=349559
[2025-07-28 06:44:27] 2025-07-28 10:43:55,714 | INFO     | process IDs to be killed: [349559] (in reverse order)
[2025-07-28 06:44:27] 2025-07-28 10:43:55,749 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 06:44:27] 2025-07-28 10:43:55,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 06:44:27] 2025-07-28 10:43:55,752 | INFO     | did not find any defunct processes belonging to 349559
[2025-07-28 06:44:27] 2025-07-28 10:43:55,755 | INFO     | did not find any defunct processes belonging to 349559
[2025-07-28 06:44:27] 2025-07-28 10:43:55,755 | INFO     | ready for new job
[2025-07-28 06:44:27] 2025-07-28 10:43:55,755 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 06:44:27] 2025-07-28 10:43:55,756 | INFO     | ***************************************
[2025-07-28 06:44:27] 2025-07-28 10:43:55,756 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 06:44:27] 2025-07-28 10:43:55,756 | INFO     | ***************************************
[2025-07-28 06:44:27] 2025-07-28 10:43:55,756 | INFO     | 
[2025-07-28 06:44:27] 2025-07-28 10:43:55,757 | INFO     | architecture information:
[2025-07-28 06:44:27] 2025-07-28 10:43:55,757 | INFO     | executing command: cat /etc/os-release
[2025-07-28 06:44:27] 2025-07-28 10:43:55,766 | INFO     | cat /etc/os-release:
[2025-07-28 06:44:27] NAME="CentOS Linux"
[2025-07-28 06:44:27] VERSION="7 (Core)"
[2025-07-28 06:44:27] ID="centos"
[2025-07-28 06:44:27] ID_LIKE="rhel fedora"
[2025-07-28 06:44:27] VERSION_ID="7"
[2025-07-28 06:44:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 06:44:27] ANSI_COLOR="0;31"
[2025-07-28 06:44:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 06:44:27] HOME_URL="https://www.centos.org/"
[2025-07-28 06:44:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 06:44:27] 
[2025-07-28 06:44:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 06:44:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 06:44:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 06:44:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 06:44:27] 
[2025-07-28 06:44:27] 2025-07-28 10:43:55,766 | INFO     | ***************************************
[2025-07-28 06:44:27] 2025-07-28 10:43:56,269 | INFO     | executing command: df -mP /var/lib/boinc/slots/0
[2025-07-28 06:44:27] 2025-07-28 10:43:56,279 | INFO     | sufficient remaining disk space (1822631657472 B)
[2025-07-28 06:44:27] 2025-07-28 10:43:56,279 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 06:44:27] 2025-07-28 10:43:56,279 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 06:44:27] 2025-07-28 10:43:56,279 | INFO     | update_server=False
[2025-07-28 06:44:27] 2025-07-28 10:43:56,279 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 06:44:27] 2025-07-28 10:43:56,279 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 06:44:27] 2025-07-28 10:43:56,359 | INFO     | all payload control threads have been joined
[2025-07-28 06:44:27] 2025-07-28 10:43:56,442 | INFO     | all data control threads have been joined
[2025-07-28 06:44:27] 2025-07-28 10:43:56,635 | INFO     | all job control threads have been joined
[2025-07-28 06:44:27] 2025-07-28 10:43:56,645 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 06:44:27] 2025-07-28 10:43:56,645 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 06:44:27] 2025-07-28 10:43:56,645 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 06:44:27] 2025-07-28 10:43:56,645 | INFO     | will abort loop
[2025-07-28 06:44:27] 2025-07-28 10:43:57,284 | INFO     | [job] retrieve thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,318 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,364 | INFO     | [payload] control thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,420 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,447 | INFO     | [data] control thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,640 | INFO     | [job] control thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,650 | INFO     | [job] job monitor thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,796 | INFO     | [payload] validate_post thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:57,927 | INFO     | [data] copytool_in thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:58,284 | INFO     | [data] copytool_out thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:58,468 | INFO     | [payload] failed_post thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:58,667 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:58,676 | INFO     | [job] validate thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:43:59,283 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 06:44:27] 2025-07-28 10:43:59,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 06:44:27] 2025-07-28 10:44:00,289 | INFO     | [job] queue monitor thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:44:03,708 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:44:06,867 | INFO     | job.realtimelogging is not enabled
[2025-07-28 06:44:27] 2025-07-28 10:44:07,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 06:44:27] 2025-07-28 10:44:08,184 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135900713875264)>', '<ExcThread(monitor, started 135899920713472)>']
[2025-07-28 06:44:27] 2025-07-28 10:44:13,209 | INFO     | all workflow threads have been joined
[2025-07-28 06:44:27] 2025-07-28 10:44:13,209 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 06:44:27] 2025-07-28 10:44:13,209 | INFO     | traces error code: 0
[2025-07-28 06:44:27] 2025-07-28 10:44:13,210 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 06:44:27] 2025-07-28 10:44:27,328 | INFO     | PID=330218 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 06:44:27] 2025-07-28 10:44:27,328 | INFO     | .. there are 3 such processes running
[2025-07-28 06:44:27] 2025-07-28 10:44:27,329 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 06:44:27] 2025-07-28 10:44:27,329 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 06:44:27] 2025-07-28 10:44:27,329 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 06:44:27] 2025-07-28 10:44:27,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 06:44:27] 2025-07-28 10:44:27,329 | INFO     | [monitor] control thread has ended
[2025-07-28 06:44:27] 2025-07-28 10:44:27,376 [wrapper] ==== pilot stdout END ====
[2025-07-28 06:44:27] 2025-07-28 10:44:27,378 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 06:44:27] 2025-07-28 10:44:27,379 [wrapper] pilotpid: 330218
[2025-07-28 06:44:27] 2025-07-28 10:44:27,380 [wrapper] Pilot exit status: 0
[2025-07-28 06:44:27] 2025-07-28 10:44:27,386 [wrapper] pandaids: 6747413390
[2025-07-28 06:44:27] 2025-07-28 10:44:27,406 [wrapper] cleanup supervisor_pilot  383563 330220
[2025-07-28 06:44:27] 2025-07-28 10:44:27,407 [wrapper] Test setup, not cleaning
[2025-07-28 06:44:27] 2025-07-28 10:44:27,409 [wrapper] apfmon messages muted
[2025-07-28 06:44:27] 2025-07-28 10:44:27,410 [wrapper] ==== wrapper stdout END ====
[2025-07-28 06:44:27] 2025-07-28 10:44:27,411 [wrapper] ==== wrapper stderr END ====
[2025-07-28 06:44:27]  *** Error codes and diagnostics ***
[2025-07-28 06:44:27]     "exeErrorCode": 0,
[2025-07-28 06:44:27]     "exeErrorDiag": "",
[2025-07-28 06:44:27]     "pilotErrorCode": 0,
[2025-07-28 06:44:27]     "pilotErrorDiag": "",
[2025-07-28 06:44:27]  *** Listing of results directory ***
[2025-07-28 06:44:27] total 347944
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc    530466 Jul 27 10:41 pilot3.tar.gz
[2025-07-28 06:44:27] -rwx------ 1 boinc boinc     36292 Jul 27 10:44 runpilot2-wrapper.sh
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc      5112 Jul 27 10:44 queuedata.json
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc       100 Jul 28 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 06:44:27] -rwxr-xr-x 1 boinc boinc      7986 Jul 28 05:35 run_atlas
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc       105 Jul 28 05:35 job.xml
[2025-07-28 06:44:27] -rw-r--r-- 2 boinc boinc     15095 Jul 28 05:35 start_atlas.sh
[2025-07-28 06:44:27] drwxrwx--x 2 boinc boinc      4096 Jul 28 05:35 shared
[2025-07-28 06:44:27] -rw-r--r-- 2 boinc boinc    542882 Jul 28 05:35 input.tar.gz
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc      9728 Jul 28 05:35 init_data.xml
[2025-07-28 06:44:27] -rw-r--r-- 2 boinc boinc 143039652 Jul 28 05:35 EVNT.45743347._002791.pool.root.1
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc         0 Jul 28 05:35 boinc_setup_complete
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc         0 Jul 28 05:35 boinc_lockfile
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc      2560 Jul 28 05:35 pandaJob.out
[2025-07-28 06:44:27] -rw------- 1 boinc boinc    978460 Jul 28 05:35 agis_schedconf.cvmfs.json
[2025-07-28 06:44:27] -rw------- 1 boinc boinc   1593052 Jul 28 05:35 agis_ddmendpoints.agis.ALL.json
[2025-07-28 06:44:27] drwx------ 4 boinc boinc      4096 Jul 28 05:35 pilot3
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc       529 Jul 28 06:43 boinc_task_state.xml
[2025-07-28 06:44:27] -rw------- 1 boinc boinc 208104728 Jul 28 06:43 HITS.45743349._050164.pool.root.1
[2025-07-28 06:44:27] -rw------- 1 boinc boinc      1012 Jul 28 06:43 memory_monitor_summary.json
[2025-07-28 06:44:27] -rw------- 1 boinc boinc    222477 Jul 28 06:43 log.45743349._050164.job.log.tgz.1
[2025-07-28 06:44:27] -rw------- 1 boinc boinc      7728 Jul 28 06:43 heartbeat.json
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc        27 Jul 28 06:44 wrapper_checkpoint.txt
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc      8192 Jul 28 06:44 boinc_mmap_file
[2025-07-28 06:44:27] -rw------- 1 boinc boinc       821 Jul 28 06:44 pilotlog.txt
[2025-07-28 06:44:27] -rw------- 1 boinc boinc        95 Jul 28 06:44 pilot_heartbeat.json
[2025-07-28 06:44:27] -rw------- 1 boinc boinc    417193 Jul 28 06:44 log.45743349._050164.job.log.1
[2025-07-28 06:44:27] -rw------- 1 boinc boinc       357 Jul 28 06:44 output.list
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc       620 Jul 28 06:44 runtime_log
[2025-07-28 06:44:27] -rw------- 1 boinc boinc    655360 Jul 28 06:44 result.tar.gz
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc      8628 Jul 28 06:44 runtime_log.err
[2025-07-28 06:44:27] -rw------- 1 boinc boinc       642 Jul 28 06:44 e25KDmDnH07n9Rq4apOajLDm4fhM0noT9bVof3QYDm9g2KDmyNP5Sm.diag
[2025-07-28 06:44:27] -rw-r--r-- 1 boinc boinc     21734 Jul 28 06:44 stderr.txt
[2025-07-28 06:44:27] HITS file was successfully produced:
[2025-07-28 06:44:27] -rw------- 1 boinc boinc 208104728 Jul 28 06:43 shared/HITS.pool.root.1
[2025-07-28 06:44:27]  *** Contents of shared directory: ***
[2025-07-28 06:44:27] total 344112
[2025-07-28 06:44:27] -rw-r--r-- 2 boinc boinc     15095 Jul 28 05:35 start_atlas.sh
[2025-07-28 06:44:27] -rw-r--r-- 2 boinc boinc    542882 Jul 28 05:35 input.tar.gz
[2025-07-28 06:44:27] -rw-r--r-- 2 boinc boinc 143039652 Jul 28 05:35 ATLAS.root_0
[2025-07-28 06:44:27] -rw------- 1 boinc boinc 208104728 Jul 28 06:43 HITS.pool.root.1
[2025-07-28 06:44:27] -rw------- 1 boinc boinc    655360 Jul 28 06:44 result.tar.gz
06:44:28 (322247): run_atlas exited; CPU time 15655.874058
06:44:28 (322247): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN