Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
05:29:13 (2069614): wrapper (7.7.26015): starting
05:29:13 (2069614): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 05:29:13] Arguments: --nthreads 12
[2025-07-28 05:29:13] Threads: 12
[2025-07-28 05:29:13] Checking for CVMFS
[2025-07-28 05:29:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 05:29:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 05:29:13] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 05:29:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 05:29:13] 2.12.6.0 3255183 19985 420596 148843 0 334 28603143 32935936 9585 16776704 1 74759881 99.567 97869768 17382 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 05:29:13] CVMFS is ok
[2025-07-28 05:29:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 05:29:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 05:29:13] Further information can be found at the LHC@home message board.
[2025-07-28 05:29:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 05:29:13] Checking for apptainer binary...
[2025-07-28 05:29:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 05:29:13] Running /usr/bin/apptainer --version
[2025-07-28 05:29:13] apptainer version 1.4.1-1.el9
[2025-07-28 05:29:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 05:29:13] c6-1-24-1.aglt2.org
[2025-07-28 05:29:13] apptainer works
[2025-07-28 05:29:13] Set ATHENA_PROC_NUMBER=12
[2025-07-28 05:29:13] Set ATHENA_CORE_NUMBER=12
[2025-07-28 05:29:13] Starting ATLAS job with PandaID=6745099891
[2025-07-28 05:29:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 06:40:22]  *** The last 200 lines of the pilot log: ***
[2025-07-28 06:40:22]  is_tar=False
[2025-07-28 06:40:22]  lfn=log.45743349._034533.job.log.tgz.1
[2025-07-28 06:40:22]  mtime=0
[2025-07-28 06:40:22]  protocol_id=None
[2025-07-28 06:40:22]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 06:40:22]  replicas=None
[2025-07-28 06:40:22]  scope=mc23_13p6TeV
[2025-07-28 06:40:22]  status=None
[2025-07-28 06:40:22]  status_code=0
[2025-07-28 06:40:22]  storage_token=
[2025-07-28 06:40:22]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745099891/log.45743349._034533.job.log.tgz.1
[2025-07-28 06:40:22]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/f5/log.45743349._034533.job.log.tgz.1
[2025-07-28 06:40:22]  workdir=None
[2025-07-28 06:40:22] ]
[2025-07-28 06:40:22] 2025-07-28 10:39:43,696 | INFO     | transferring file log.45743349._034533.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745099891/log.45743349._034533.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 06:40:22] 2025-07-28 10:39:43,696 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745099891/log.45743349._034533.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._034533.job
[2025-07-28 06:40:22] 2025-07-28 10:39:43,719 | INFO     | adding to output.list: log.45743349._034533.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/5f/f5/log.45743349._034533.job.log.tg
[2025-07-28 06:40:22] 2025-07-28 10:39:43,720 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 06:40:22] 2025-07-28 10:39:43,721 | INFO     | summary of transferred files:
[2025-07-28 06:40:22] 2025-07-28 10:39:43,721 | INFO     |  -- lfn=log.45743349._034533.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 06:40:22] 2025-07-28 10:39:43,721 | INFO     | stage-out finished correctly
[2025-07-28 06:40:22] 2025-07-28 10:39:44,009 | INFO     | PID=2073216 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 06:40:22] 2025-07-28 10:39:44,010 | INFO     | .. there are 15 such processes running
[2025-07-28 06:40:22] 2025-07-28 10:39:44,230 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 06:40:22] 2025-07-28 10:39:44,293 | INFO     | job 6745099891 has state=finished
[2025-07-28 06:40:22] 2025-07-28 10:39:44,294 | INFO     | preparing for final server update for job 6745099891 in state='finished'
[2025-07-28 06:40:22] 2025-07-28 10:39:44,294 | INFO     | this job has now completed (state=finished)
[2025-07-28 06:40:22] 2025-07-28 10:39:44,295 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 06:40:22] 2025-07-28 10:39:44,295 | INFO     | log transfer has been attempted: DONE
[2025-07-28 06:40:22] 2025-07-28 10:39:44,295 | INFO     | job 6745099891 has finished - writing final server update
[2025-07-28 06:40:22] 2025-07-28 10:39:44,295 | INFO     | total number of processed events: 400 (read)
[2025-07-28 06:40:22] 2025-07-28 10:39:44,296 | INFO     | executing command: lscpu
[2025-07-28 06:40:22] 2025-07-28 10:39:44,346 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 06:40:22] 2025-07-28 10:39:45,409 | INFO     | monitor loop #316: job 0:6745099891 is in state 'finished'
[2025-07-28 06:40:22] 2025-07-28 10:39:45,409 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 06:40:22] 2025-07-28 10:39:47,912 | INFO     | monitor loop #317: job 0:6745099891 is in state 'finished'
[2025-07-28 06:40:22] 2025-07-28 10:39:47,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 06:40:22] 2025-07-28 10:39:49,042 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 06:40:22] 2025-07-28 10:39:49,059 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2727.395089285714
[2025-07-28 06:40:22] 2025-07-28 10:39:49,067 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745099891/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 06:40:22] 2025-07-28 10:39:49,068 | INFO     | extracted standard info from prmon json
[2025-07-28 06:40:22] 2025-07-28 10:39:49,068 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 06:40:22] 2025-07-28 10:39:49,068 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 06:40:22] 2025-07-28 10:39:49,069 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 06:40:22] 2025-07-28 10:39:49,069 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 06:40:22] 2025-07-28 10:39:49,070 | INFO     | fitting pss+swap vs Time
[2025-07-28 06:40:22] 2025-07-28 10:39:49,070 | INFO     | sum of square deviations: 73882315.5
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | sum of deviations: -10966556240.5
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | mean x: 1753697159.5
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | mean y: 2625717.8870967743
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | -- intersect: 260308740899.9681
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | intersect: 260308740899.9681
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | chi2: 0.10904490996769958
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | -- intersect: 260308740899.9681
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | current memory leak: -148.43 B/s (using 62 data points, chi2=0.11)
[2025-07-28 06:40:22] 2025-07-28 10:39:49,071 | INFO     | could have reported an average CPU frequency of 2668 MHz (6 samples)
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | ..............................
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . Timing measurements:
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . get job = 0 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . initial setup = 2 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . payload setup = 7 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . stage-in = 0 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . payload execution = 4190 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . stage-out = 0 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | . log creation = 0 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,072 | INFO     | ..............................
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | 
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | job summary report
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | --------------------------------------------------
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | PanDA job id: 6745099891
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | task id: 45743349
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | errors: (none)
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | pilot state: finished 
[2025-07-28 06:40:22] 2025-07-28 10:39:49,152 | INFO     | transexitcode: 0
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | exeerrorcode: 0
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | exeerrordiag: 
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | exitcode: 0
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | exitmsg: OK
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | cpuconsumptiontime: 46137 s
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | nevents: 400
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | neventsw: 0
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | pid: 2079706
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | pgrp: 2079706
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | corecount: 12
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | event service: False
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | sizes: {0: 2397474, 5: 2397736, 11: 2397792, 4201: 2423775, 4203: 2432829, 4208: 2432967}
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | --------------------------------------------------
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | 
[2025-07-28 06:40:22] 2025-07-28 10:39:49,153 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 06:40:22] 2025-07-28 10:39:49,176 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,176 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,176 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,176 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 06:40:22] 2025-07-28 10:39:49,177 | INFO     | job 6745099891 has completed (purged errors)
[2025-07-28 06:40:22] 2025-07-28 10:39:49,178 | INFO     | overall cleanup function is called
[2025-07-28 06:40:22] 2025-07-28 10:39:50,185 | INFO     | --- collectZombieJob: --- 10, [2079706]
[2025-07-28 06:40:22] 2025-07-28 10:39:50,185 | INFO     | zombie collector waiting for pid 2079706
[2025-07-28 06:40:22] 2025-07-28 10:39:50,185 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 06:40:22] 2025-07-28 10:39:50,185 | INFO     | collected zombie processes
[2025-07-28 06:40:22] 2025-07-28 10:39:50,185 | INFO     | will attempt to kill all subprocesses of pid=2079706
[2025-07-28 06:40:22] 2025-07-28 10:39:50,419 | INFO     | process IDs to be killed: [2079706] (in reverse order)
[2025-07-28 06:40:22] 2025-07-28 10:39:50,507 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 06:40:22] 2025-07-28 10:39:50,508 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 06:40:22] 2025-07-28 10:39:50,516 | INFO     | did not find any defunct processes belonging to 2079706
[2025-07-28 06:40:22] 2025-07-28 10:39:50,525 | INFO     | did not find any defunct processes belonging to 2079706
[2025-07-28 06:40:22] 2025-07-28 10:39:50,526 | INFO     | ready for new job
[2025-07-28 06:40:22] 2025-07-28 10:39:50,526 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 06:40:22] 2025-07-28 10:39:50,528 | INFO     | ***************************************
[2025-07-28 06:40:22] 2025-07-28 10:39:50,529 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 06:40:22] 2025-07-28 10:39:50,529 | INFO     | ***************************************
[2025-07-28 06:40:22] 2025-07-28 10:39:50,529 | INFO     | 
[2025-07-28 06:40:22] 2025-07-28 10:39:50,544 | INFO     | architecture information:
[2025-07-28 06:40:22] 2025-07-28 10:39:50,544 | INFO     | executing command: cat /etc/os-release
[2025-07-28 06:40:22] 2025-07-28 10:39:50,559 | INFO     | cat /etc/os-release:
[2025-07-28 06:40:22] NAME="CentOS Linux"
[2025-07-28 06:40:22] VERSION="7 (Core)"
[2025-07-28 06:40:22] ID="centos"
[2025-07-28 06:40:22] ID_LIKE="rhel fedora"
[2025-07-28 06:40:22] VERSION_ID="7"
[2025-07-28 06:40:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 06:40:22] ANSI_COLOR="0;31"
[2025-07-28 06:40:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 06:40:22] HOME_URL="https://www.centos.org/"
[2025-07-28 06:40:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 06:40:22] 
[2025-07-28 06:40:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 06:40:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 06:40:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 06:40:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 06:40:22] 
[2025-07-28 06:40:22] 2025-07-28 10:39:50,560 | INFO     | ***************************************
[2025-07-28 06:40:22] 2025-07-28 10:39:51,062 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 06:40:22] 2025-07-28 10:39:51,082 | INFO     | sufficient remaining disk space (76688654336 B)
[2025-07-28 06:40:22] 2025-07-28 10:39:51,083 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 06:40:22] 2025-07-28 10:39:51,083 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 06:40:22] 2025-07-28 10:39:51,083 | INFO     | update_server=False
[2025-07-28 06:40:22] 2025-07-28 10:39:51,083 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 06:40:22] 2025-07-28 10:39:51,083 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 06:40:22] 2025-07-28 10:39:51,084 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 06:40:22] 2025-07-28 10:39:51,197 | INFO     | all data control threads have been joined
[2025-07-28 06:40:22] 2025-07-28 10:39:51,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 06:40:22] 2025-07-28 10:39:51,421 | INFO     | aborting loop
[2025-07-28 06:40:22] 2025-07-28 10:39:51,588 | INFO     | all payload control threads have been joined
[2025-07-28 06:40:22] 2025-07-28 10:39:51,821 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 06:40:22] 2025-07-28 10:39:52,088 | INFO     | [job] retrieve thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,089 | INFO     | [job] queue monitor thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,101 | INFO     | all job control threads have been joined
[2025-07-28 06:40:22] 2025-07-28 10:39:52,202 | INFO     | [data] control thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,233 | INFO     | [job] validate thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,254 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,426 | INFO     | [job] job monitor thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,594 | INFO     | [payload] control thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,667 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,796 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,797 | INFO     | [payload] failed_post thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:52,930 | INFO     | [payload] validate_post thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:53,034 | INFO     | [data] copytool_in thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:53,106 | INFO     | [job] control thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:53,179 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:53,827 | INFO     | [data] copytool_out thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:55,090 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 06:40:22] 2025-07-28 10:39:56,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139793962538816)>', '<ExcThread(monitor, started 139793191134976)>']
[2025-07-28 06:40:22] 2025-07-28 10:40:01,347 | INFO     | all workflow threads have been joined
[2025-07-28 06:40:22] 2025-07-28 10:40:01,348 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 06:40:22] 2025-07-28 10:40:01,348 | INFO     | traces error code: 0
[2025-07-28 06:40:22] 2025-07-28 10:40:01,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 06:40:22] 2025-07-28 10:40:22,414 | INFO     | PID=2073216 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 06:40:22] 2025-07-28 10:40:22,415 | INFO     | .. there are 15 such processes running
[2025-07-28 06:40:22] 2025-07-28 10:40:22,415 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 06:40:22] 2025-07-28 10:40:22,415 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 06:40:22] 2025-07-28 10:40:22,415 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 06:40:22] 2025-07-28 10:40:22,415 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 06:40:22] 2025-07-28 10:40:22,415 | INFO     | [monitor] control thread has ended
[2025-07-28 06:40:22] 2025-07-28 10:40:22,690 [wrapper] ==== pilot stdout END ====
[2025-07-28 06:40:22] 2025-07-28 10:40:22,695 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 06:40:22] 2025-07-28 10:40:22,698 [wrapper] pilotpid: 2073216
[2025-07-28 06:40:22] 2025-07-28 10:40:22,702 [wrapper] Pilot exit status: 0
[2025-07-28 06:40:22] 2025-07-28 10:40:22,715 [wrapper] pandaids: 6745099891
[2025-07-28 06:40:22] 2025-07-28 10:40:22,773 [wrapper] cleanup supervisor_pilot 2259043 2073217
[2025-07-28 06:40:22] 2025-07-28 10:40:22,776 [wrapper] Test setup, not cleaning
[2025-07-28 06:40:22] 2025-07-28 10:40:22,780 [wrapper] apfmon messages muted
[2025-07-28 06:40:22] 2025-07-28 10:40:22,785 [wrapper] ==== wrapper stdout END ====
[2025-07-28 06:40:22] 2025-07-28 10:40:22,789 [wrapper] ==== wrapper stderr END ====
[2025-07-28 06:40:22]  *** Error codes and diagnostics ***
[2025-07-28 06:40:22]     "exeErrorCode": 0,
[2025-07-28 06:40:22]     "exeErrorDiag": "",
[2025-07-28 06:40:22]     "pilotErrorCode": 0,
[2025-07-28 06:40:22]     "pilotErrorDiag": "",
[2025-07-28 06:40:22]  *** Listing of results directory ***
[2025-07-28 06:40:22] total 345608
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 03:16 pilot3.tar.gz
[2025-07-28 06:40:22] -rwx------. 1 boincer umatlas     36292 Jul 26 03:38 runpilot2-wrapper.sh
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 03:38 queuedata.json
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas       100 Jul 28 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 06:40:22] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 05:29 run_atlas
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas       105 Jul 28 05:29 job.xml
[2025-07-28 06:40:22] -rw-r--r--. 2 boincer umatlas 142948508 Jul 28 05:29 EVNT.45743347._001956.pool.root.1
[2025-07-28 06:40:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 05:29 start_atlas.sh
[2025-07-28 06:40:22] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 05:29 shared
[2025-07-28 06:40:22] -rw-r--r--. 2 boincer umatlas    542889 Jul 28 05:29 input.tar.gz
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas         0 Jul 28 05:29 boinc_lockfile
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 05:29 pandaJob.out
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas    978460 Jul 28 05:29 agis_schedconf.cvmfs.json
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas   1593052 Jul 28 05:29 agis_ddmendpoints.agis.ALL.json
[2025-07-28 06:40:22] drwx------. 4 boincer umatlas      4096 Jul 28 05:29 pilot3
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas      6842 Jul 28 06:38 init_data.xml
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas 205527036 Jul 28 06:39 HITS.45743349._034533.pool.root.1
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas       529 Jul 28 06:39 boinc_task_state.xml
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas      1050 Jul 28 06:39 memory_monitor_summary.json
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas    356143 Jul 28 06:39 log.45743349._034533.job.log.tgz.1
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas        95 Jul 28 06:39 pilot_heartbeat.json
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas      7825 Jul 28 06:39 heartbeat.json
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 06:40 boinc_mmap_file
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas        27 Jul 28 06:40 wrapper_checkpoint.txt
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas       823 Jul 28 06:40 pilotlog.txt
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas    424859 Jul 28 06:40 log.45743349._034533.job.log.1
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas       357 Jul 28 06:40 output.list
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas       620 Jul 28 06:40 runtime_log
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas    798720 Jul 28 06:40 result.tar.gz
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas       655 Jul 28 06:40 VmpMDmgfoz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmyP0KDmecVjkn.diag
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 06:40 runtime_log.err
[2025-07-28 06:40:22] -rw-r--r--. 1 boincer umatlas     21652 Jul 28 06:40 stderr.txt
[2025-07-28 06:40:22] HITS file was successfully produced:
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas 205527036 Jul 28 06:39 shared/HITS.pool.root.1
[2025-07-28 06:40:22]  *** Contents of shared directory: ***
[2025-07-28 06:40:22] total 341644
[2025-07-28 06:40:22] -rw-r--r--. 2 boincer umatlas 142948508 Jul 28 05:29 ATLAS.root_0
[2025-07-28 06:40:22] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 05:29 start_atlas.sh
[2025-07-28 06:40:22] -rw-r--r--. 2 boincer umatlas    542889 Jul 28 05:29 input.tar.gz
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas 205527036 Jul 28 06:39 HITS.pool.root.1
[2025-07-28 06:40:22] -rw-------. 1 boincer umatlas    798720 Jul 28 06:40 result.tar.gz
06:40:23 (2069614): run_atlas exited; CPU time 46178.474166
06:40:23 (2069614): called boinc_finish(0)

</stderr_txt>
]]>

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