Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:21:24 (5926): wrapper (7.7.26015): starting
05:21:24 (5926): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 05:21:24] Arguments: --nthreads 12
[2025-07-28 05:21:24] Threads: 12
[2025-07-28 05:21:24] Checking for CVMFS
[2025-07-28 05:21:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 05:21:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 05:21:24] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 05:21:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 05:21:24] 2.11.2.0 2945 113255 98584 148843 1 1 15924467 20275201 1 130560 0 40150276 99.972 9938547 11128 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 05:21:24] CVMFS is ok
[2025-07-28 05:21:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 05:21:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 05:21:24] Further information can be found at the LHC@home message board.
[2025-07-28 05:21:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 05:21:24] Checking for apptainer binary...
[2025-07-28 05:21:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 05:21:24] Running /usr/bin/apptainer --version
[2025-07-28 05:21:24] apptainer version 1.3.2-1.el7
[2025-07-28 05:21:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 05:21:26] c-205-2.aglt2.org
[2025-07-28 05:21:26] apptainer works
[2025-07-28 05:21:26] Set ATHENA_PROC_NUMBER=12
[2025-07-28 05:21:26] Set ATHENA_CORE_NUMBER=12
[2025-07-28 05:21:26] Starting ATLAS job with PandaID=6745059299
[2025-07-28 05:21:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 06:41:02]  *** The last 200 lines of the pilot log: ***
[2025-07-28 06:41:02]  is_tar=False
[2025-07-28 06:41:02]  lfn=log.45743349._024649.job.log.tgz.1
[2025-07-28 06:41:02]  mtime=0
[2025-07-28 06:41:02]  protocol_id=None
[2025-07-28 06:41:02]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 06:41:02]  replicas=None
[2025-07-28 06:41:02]  scope=mc23_13p6TeV
[2025-07-28 06:41:02]  status=None
[2025-07-28 06:41:02]  status_code=0
[2025-07-28 06:41:02]  storage_token=
[2025-07-28 06:41:02]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745059299/log.45743349._024649.job.log.tgz.1
[2025-07-28 06:41:02]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/55/log.45743349._024649.job.log.tgz.1
[2025-07-28 06:41:02]  workdir=None
[2025-07-28 06:41:02] ]
[2025-07-28 06:41:02] 2025-07-28 10:40:22,174 | INFO     | transferring file log.45743349._024649.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745059299/log.45743349._024649.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 06:41:02] 2025-07-28 10:40:22,174 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745059299/log.45743349._024649.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._024649.job
[2025-07-28 06:41:02] 2025-07-28 10:40:22,196 | INFO     | adding to output.list: log.45743349._024649.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d8/55/log.45743349._024649.job.log.tg
[2025-07-28 06:41:02] 2025-07-28 10:40:22,197 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 06:41:02] 2025-07-28 10:40:22,197 | INFO     | summary of transferred files:
[2025-07-28 06:41:02] 2025-07-28 10:40:22,197 | INFO     |  -- lfn=log.45743349._024649.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 06:41:02] 2025-07-28 10:40:22,198 | INFO     | stage-out finished correctly
[2025-07-28 06:41:02] 2025-07-28 10:40:22,611 | INFO     | monitor loop #354: job 0:6745059299 is in state 'finished'
[2025-07-28 06:41:02] 2025-07-28 10:40:22,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 06:41:02] 2025-07-28 10:40:24,408 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 06:41:02] 2025-07-28 10:40:24,492 | INFO     | job 6745059299 has state=finished
[2025-07-28 06:41:02] 2025-07-28 10:40:24,493 | INFO     | preparing for final server update for job 6745059299 in state='finished'
[2025-07-28 06:41:02] 2025-07-28 10:40:24,493 | INFO     | this job has now completed (state=finished)
[2025-07-28 06:41:02] 2025-07-28 10:40:24,493 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 06:41:02] 2025-07-28 10:40:24,493 | INFO     | log transfer has been attempted: DONE
[2025-07-28 06:41:02] 2025-07-28 10:40:24,494 | INFO     | job 6745059299 has finished - writing final server update
[2025-07-28 06:41:02] 2025-07-28 10:40:24,494 | INFO     | total number of processed events: 400 (read)
[2025-07-28 06:41:02] 2025-07-28 10:40:24,495 | INFO     | executing command: lscpu
[2025-07-28 06:41:02] 2025-07-28 10:40:24,522 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 06:41:02] 2025-07-28 10:40:25,114 | INFO     | monitor loop #355: job 0:6745059299 is in state 'finished'
[2025-07-28 06:41:02] 2025-07-28 10:40:25,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 06:41:02] 2025-07-28 10:40:26,048 | INFO     | PID=9607 has CPU usage=6.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 06:41:02] 2025-07-28 10:40:27,624 | INFO     | monitor loop #356: job 0:6745059299 is in state 'finished'
[2025-07-28 06:41:02] 2025-07-28 10:40:27,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 06:41:02] 2025-07-28 10:40:29,485 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 06:41:02] 2025-07-28 10:40:29,489 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1806.6666666666667
[2025-07-28 06:41:02] 2025-07-28 10:40:29,491 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745059299/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 06:41:02] 2025-07-28 10:40:29,492 | INFO     | extracted standard info from prmon json
[2025-07-28 06:41:02] 2025-07-28 10:40:29,492 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 06:41:02] 2025-07-28 10:40:29,492 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 06:41:02] 2025-07-28 10:40:29,492 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 06:41:02] 2025-07-28 10:40:29,492 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 06:41:02] 2025-07-28 10:40:29,494 | INFO     | fitting pss+swap vs Time
[2025-07-28 06:41:02] 2025-07-28 10:40:29,494 | INFO     | sum of square deviations: 106336877.5
[2025-07-28 06:41:02] 2025-07-28 10:40:29,494 | INFO     | sum of deviations: -9211779153.0
[2025-07-28 06:41:02] 2025-07-28 10:40:29,494 | INFO     | mean x: 1753696941.5
[2025-07-28 06:41:02] 2025-07-28 10:40:29,494 | INFO     | mean y: 2852423.942857143
[2025-07-28 06:41:02] 2025-07-28 10:40:29,495 | INFO     | -- intersect: 151922574971.6504
[2025-07-28 06:41:02] 2025-07-28 10:40:29,495 | INFO     | intersect: 151922574971.6504
[2025-07-28 06:41:02] 2025-07-28 10:40:29,495 | INFO     | chi2: 0.05937729101357451
[2025-07-28 06:41:02] 2025-07-28 10:40:29,495 | INFO     | -- intersect: 151922574971.6504
[2025-07-28 06:41:02] 2025-07-28 10:40:29,495 | INFO     | current memory leak: -86.63 B/s (using 70 data points, chi2=0.06)
[2025-07-28 06:41:02] 2025-07-28 10:40:29,495 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | ..............................
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . Timing measurements:
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . get job = 0 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . initial setup = 2 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . payload setup = 10 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . stage-in = 0 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . payload execution = 4690 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . stage-out = 0 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,496 | INFO     | . log creation = 0 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,497 | INFO     | ..............................
[2025-07-28 06:41:02] 2025-07-28 10:40:29,581 | INFO     | 
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | job summary report
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | --------------------------------------------------
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | PanDA job id: 6745059299
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | task id: 45743349
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | errors: (none)
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | pilot state: finished 
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | transexitcode: 0
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | exeerrorcode: 0
[2025-07-28 06:41:02] 2025-07-28 10:40:29,582 | INFO     | exeerrordiag: 
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | exitcode: 0
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | exitmsg: OK
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | cpuconsumptiontime: 51813 s
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | nevents: 400
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | neventsw: 0
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | pid: 16060
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | pgrp: 16060
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | corecount: 12
[2025-07-28 06:41:02] 2025-07-28 10:40:29,583 | INFO     | event service: False
[2025-07-28 06:41:02] 2025-07-28 10:40:29,584 | INFO     | sizes: {0: 2397246, 1: 2397501, 6: 2397763, 12: 2397791, 4704: 2423955, 4706: 2432953, 4709: 2433137, 4714: 2433331}
[2025-07-28 06:41:02] 2025-07-28 10:40:29,584 | INFO     | --------------------------------------------------
[2025-07-28 06:41:02] 2025-07-28 10:40:29,584 | INFO     | 
[2025-07-28 06:41:02] 2025-07-28 10:40:29,584 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 06:41:02] 2025-07-28 10:40:29,607 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,607 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,607 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,607 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,608 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,608 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,608 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,608 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,608 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,608 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,609 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,609 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,609 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,609 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,609 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,609 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,610 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 06:41:02] 2025-07-28 10:40:29,610 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,610 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 06:41:02] 2025-07-28 10:40:29,610 | INFO     | job 6745059299 has completed (purged errors)
[2025-07-28 06:41:02] 2025-07-28 10:40:29,610 | INFO     | overall cleanup function is called
[2025-07-28 06:41:02] 2025-07-28 10:40:30,619 | INFO     | --- collectZombieJob: --- 10, [16060]
[2025-07-28 06:41:02] 2025-07-28 10:40:30,619 | INFO     | zombie collector waiting for pid 16060
[2025-07-28 06:41:02] 2025-07-28 10:40:30,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 06:41:02] 2025-07-28 10:40:30,619 | INFO     | collected zombie processes
[2025-07-28 06:41:02] 2025-07-28 10:40:30,620 | INFO     | will attempt to kill all subprocesses of pid=16060
[2025-07-28 06:41:02] 2025-07-28 10:40:30,718 | INFO     | process IDs to be killed: [16060] (in reverse order)
[2025-07-28 06:41:02] 2025-07-28 10:40:30,771 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 06:41:02] 2025-07-28 10:40:30,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 06:41:02] 2025-07-28 10:40:30,775 | INFO     | did not find any defunct processes belonging to 16060
[2025-07-28 06:41:02] 2025-07-28 10:40:30,778 | INFO     | did not find any defunct processes belonging to 16060
[2025-07-28 06:41:02] 2025-07-28 10:40:30,778 | INFO     | ready for new job
[2025-07-28 06:41:02] 2025-07-28 10:40:30,778 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 06:41:02] 2025-07-28 10:40:30,780 | INFO     | ***************************************
[2025-07-28 06:41:02] 2025-07-28 10:40:30,780 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 06:41:02] 2025-07-28 10:40:30,780 | INFO     | ***************************************
[2025-07-28 06:41:02] 2025-07-28 10:40:30,780 | INFO     | 
[2025-07-28 06:41:02] 2025-07-28 10:40:30,780 | INFO     | architecture information:
[2025-07-28 06:41:02] 2025-07-28 10:40:30,781 | INFO     | executing command: cat /etc/os-release
[2025-07-28 06:41:02] 2025-07-28 10:40:30,795 | INFO     | cat /etc/os-release:
[2025-07-28 06:41:02] NAME="CentOS Linux"
[2025-07-28 06:41:02] VERSION="7 (Core)"
[2025-07-28 06:41:02] ID="centos"
[2025-07-28 06:41:02] ID_LIKE="rhel fedora"
[2025-07-28 06:41:02] VERSION_ID="7"
[2025-07-28 06:41:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 06:41:02] ANSI_COLOR="0;31"
[2025-07-28 06:41:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 06:41:02] HOME_URL="https://www.centos.org/"
[2025-07-28 06:41:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 06:41:02] 
[2025-07-28 06:41:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 06:41:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 06:41:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 06:41:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 06:41:02] 
[2025-07-28 06:41:02] 2025-07-28 10:40:30,795 | INFO     | ***************************************
[2025-07-28 06:41:02] 2025-07-28 10:40:31,296 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 06:41:02] 2025-07-28 10:40:31,314 | INFO     | sufficient remaining disk space (29427236864 B)
[2025-07-28 06:41:02] 2025-07-28 10:40:31,315 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 06:41:02] 2025-07-28 10:40:31,315 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 06:41:02] 2025-07-28 10:40:31,315 | INFO     | update_server=False
[2025-07-28 06:41:02] 2025-07-28 10:40:31,315 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 06:41:02] 2025-07-28 10:40:31,316 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 06:41:02] 2025-07-28 10:40:31,316 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 06:41:02] 2025-07-28 10:40:31,316 | INFO     | aborting loop
[2025-07-28 06:41:02] 2025-07-28 10:40:31,317 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 06:41:02] 2025-07-28 10:40:31,775 | INFO     | all data control threads have been joined
[2025-07-28 06:41:02] 2025-07-28 10:40:31,965 | INFO     | all payload control threads have been joined
[2025-07-28 06:41:02] 2025-07-28 10:40:32,117 | INFO     | all job control threads have been joined
[2025-07-28 06:41:02] 2025-07-28 10:40:32,316 | INFO     | [job] retrieve thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,322 | INFO     | [job] queue monitor thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,322 | INFO     | [job] job monitor thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,390 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,485 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,530 | INFO     | [payload] validate_post thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,776 | INFO     | [data] control thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,798 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 06:41:02] 2025-07-28 10:40:32,910 | INFO     | [payload] failed_post thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,970 | INFO     | [payload] control thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:32,983 | INFO     | [data] copytool_in thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:33,122 | INFO     | [job] control thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:33,258 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:33,601 | INFO     | [job] validate thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:33,647 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:34,799 | INFO     | [data] copytool_out thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:35,323 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 06:41:02] 2025-07-28 10:40:35,339 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139827218036544)>', '<ExcThread(monitor, started 139826317735680)>']
[2025-07-28 06:41:02] 2025-07-28 10:40:40,347 | INFO     | all workflow threads have been joined
[2025-07-28 06:41:02] 2025-07-28 10:40:40,347 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 06:41:02] 2025-07-28 10:40:40,347 | INFO     | traces error code: 0
[2025-07-28 06:41:02] 2025-07-28 10:40:40,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 06:41:02] 2025-07-28 10:41:02,256 | INFO     | PID=9607 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 06:41:02] 2025-07-28 10:41:02,257 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 06:41:02] 2025-07-28 10:41:02,257 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 06:41:02] 2025-07-28 10:41:02,257 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 06:41:02] 2025-07-28 10:41:02,257 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 06:41:02] 2025-07-28 10:41:02,257 | INFO     | [monitor] control thread has ended
[2025-07-28 06:41:02] 2025-07-28 10:41:02,347 [wrapper] ==== pilot stdout END ====
[2025-07-28 06:41:02] 2025-07-28 10:41:02,351 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 06:41:02] 2025-07-28 10:41:02,354 [wrapper] pilotpid: 9607
[2025-07-28 06:41:02] 2025-07-28 10:41:02,358 [wrapper] Pilot exit status: 0
[2025-07-28 06:41:02] 2025-07-28 10:41:02,374 [wrapper] pandaids: 6745059299
[2025-07-28 06:41:02] 2025-07-28 10:41:02,415 [wrapper] cleanup supervisor_pilot 26541 9608
[2025-07-28 06:41:02] 2025-07-28 10:41:02,419 [wrapper] Test setup, not cleaning
[2025-07-28 06:41:02] 2025-07-28 10:41:02,423 [wrapper] apfmon messages muted
[2025-07-28 06:41:02] 2025-07-28 10:41:02,427 [wrapper] ==== wrapper stdout END ====
[2025-07-28 06:41:02] 2025-07-28 10:41:02,431 [wrapper] ==== wrapper stderr END ====
[2025-07-28 06:41:02]  *** Error codes and diagnostics ***
[2025-07-28 06:41:02]     "exeErrorCode": 0,
[2025-07-28 06:41:02]     "exeErrorDiag": "",
[2025-07-28 06:41:02]     "pilotErrorCode": 0,
[2025-07-28 06:41:02]     "pilotErrorDiag": "",
[2025-07-28 06:41:02]  *** Listing of results directory ***
[2025-07-28 06:41:02] total 427932
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas    530466 Jul 25 13:32 pilot3.tar.gz
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas      5112 Jul 25 13:43 queuedata.json
[2025-07-28 06:41:02] -rwx------ 1 boincer umatlas     36292 Jul 25 13:44 runpilot2-wrapper.sh
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas       100 Jul 28 05:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 06:41:02] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 05:21 run_atlas
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas       105 Jul 28 05:21 job.xml
[2025-07-28 06:41:02] -rw-r--r-- 2 boincer umatlas 228898552 Jul 28 05:21 EVNT.45743347._001400.pool.root.1
[2025-07-28 06:41:02] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 05:21 start_atlas.sh
[2025-07-28 06:41:02] drwxrwx--x 2 boincer umatlas      4096 Jul 28 05:21 shared
[2025-07-28 06:41:02] -rw-r--r-- 2 boincer umatlas    542884 Jul 28 05:21 input.tar.gz
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas         0 Jul 28 05:21 boinc_lockfile
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas      2562 Jul 28 05:21 pandaJob.out
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas    978460 Jul 28 05:21 agis_schedconf.cvmfs.json
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas   1593052 Jul 28 05:21 agis_ddmendpoints.agis.ALL.json
[2025-07-28 06:41:02] drwx------ 4 boincer umatlas      4096 Jul 28 05:21 pilot3
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas      5867 Jul 28 06:38 init_data.xml
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas 203775926 Jul 28 06:39 HITS.45743349._024649.pool.root.1
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas       529 Jul 28 06:40 boinc_task_state.xml
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas      1045 Jul 28 06:40 memory_monitor_summary.json
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas    378248 Jul 28 06:40 log.45743349._024649.job.log.tgz.1
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas      7851 Jul 28 06:40 heartbeat.json
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas        27 Jul 28 06:40 wrapper_checkpoint.txt
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 06:40 boinc_mmap_file
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas        95 Jul 28 06:41 pilot_heartbeat.json
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas       744 Jul 28 06:41 pilotlog.txt
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas    451799 Jul 28 06:41 log.45743349._024649.job.log.1
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas       357 Jul 28 06:41 output.list
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas       620 Jul 28 06:41 runtime_log
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas    849920 Jul 28 06:41 result.tar.gz
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas       658 Jul 28 06:41 wMyNDmzdbz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmxJzKDmYsZAjn.diag
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas      8657 Jul 28 06:41 runtime_log.err
[2025-07-28 06:41:02] -rw-r--r-- 1 boincer umatlas     21694 Jul 28 06:41 stderr.txt
[2025-07-28 06:41:02] HITS file was successfully produced:
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas 203775926 Jul 28 06:39 shared/HITS.pool.root.1
[2025-07-28 06:41:02]  *** Contents of shared directory: ***
[2025-07-28 06:41:02] total 423916
[2025-07-28 06:41:02] -rw-r--r-- 2 boincer umatlas 228898552 Jul 28 05:21 ATLAS.root_0
[2025-07-28 06:41:02] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 05:21 start_atlas.sh
[2025-07-28 06:41:02] -rw-r--r-- 2 boincer umatlas    542884 Jul 28 05:21 input.tar.gz
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas 203775926 Jul 28 06:39 HITS.pool.root.1
[2025-07-28 06:41:02] -rw------- 1 boincer umatlas    849920 Jul 28 06:41 result.tar.gz
06:41:03 (5926): run_atlas exited; CPU time 51788.486758
06:41:03 (5926): called boinc_finish(0)

</stderr_txt>
]]>

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