Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:53:52 (2300344): wrapper (7.7.26015): starting
06:53:52 (2300344): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 06:53:52] Arguments: --nthreads 12
[2025-07-28 06:53:52] Threads: 12
[2025-07-28 06:53:52] Checking for CVMFS
[2025-07-28 06:53:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 06:53:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 06:53:52] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 06:53:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 06:53:52] 2.13.0.0 1889558 19711 315396 148845 3 470 30486232 40960000 11045 16776704 1 54447976 99.811 44692541 29186 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 06:53:52] CVMFS is ok
[2025-07-28 06:53:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 06:53:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 06:53:52] Further information can be found at the LHC@home message board.
[2025-07-28 06:53:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 06:53:52] Checking for apptainer binary...
[2025-07-28 06:53:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 06:53:52] Running /usr/bin/apptainer --version
[2025-07-28 06:53:52] apptainer version 1.4.1-1.el9
[2025-07-28 06:53:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 06:53:52] c6-5-7-1.aglt2.org
[2025-07-28 06:53:52] apptainer works
[2025-07-28 06:53:52] Set ATHENA_PROC_NUMBER=12
[2025-07-28 06:53:52] Set ATHENA_CORE_NUMBER=12
[2025-07-28 06:53:52] Starting ATLAS job with PandaID=6745060389
[2025-07-28 06:53:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 08:33:45]  *** The last 200 lines of the pilot log: ***
[2025-07-28 08:33:45]  replicas=None
[2025-07-28 08:33:45]  scope=mc23_13p6TeV
[2025-07-28 08:33:45]  status=None
[2025-07-28 08:33:45]  status_code=0
[2025-07-28 08:33:45]  storage_token=
[2025-07-28 08:33:45]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745060389/log.45743349._025580.job.log.tgz.1
[2025-07-28 08:33:45]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/8e/log.45743349._025580.job.log.tgz.1
[2025-07-28 08:33:45]  workdir=None
[2025-07-28 08:33:45] ]
[2025-07-28 08:33:45] 2025-07-28 12:33:02,248 | INFO     | transferring file log.45743349._025580.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745060389/log.45743349._025580.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 08:33:45] 2025-07-28 12:33:02,248 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745060389/log.45743349._025580.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._025580.job
[2025-07-28 08:33:45] 2025-07-28 12:33:02,265 | INFO     | adding to output.list: log.45743349._025580.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/53/8e/log.45743349._025580.job.log.tg
[2025-07-28 08:33:45] 2025-07-28 12:33:02,266 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 08:33:45] 2025-07-28 12:33:02,266 | INFO     | summary of transferred files:
[2025-07-28 08:33:45] 2025-07-28 12:33:02,266 | INFO     |  -- lfn=log.45743349._025580.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 08:33:45] 2025-07-28 12:33:02,266 | INFO     | stage-out finished correctly
[2025-07-28 08:33:45] 2025-07-28 12:33:05,730 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 08:33:45] 2025-07-28 12:33:07,137 | WARNING  | process 2311881 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 08:33:45] 2025-07-28 12:33:07,137 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745060389/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 08:33:45] 2025-07-28 12:33:07,189 | INFO     | job 6745060389 has state=finished
[2025-07-28 08:33:45] 2025-07-28 12:33:07,189 | INFO     | preparing for final server update for job 6745060389 in state='finished'
[2025-07-28 08:33:45] 2025-07-28 12:33:07,190 | INFO     | this job has now completed (state=finished)
[2025-07-28 08:33:45] 2025-07-28 12:33:07,191 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 08:33:45] 2025-07-28 12:33:07,191 | INFO     | log transfer has been attempted: DONE
[2025-07-28 08:33:45] 2025-07-28 12:33:07,191 | INFO     | job 6745060389 has finished - writing final server update
[2025-07-28 08:33:45] 2025-07-28 12:33:07,192 | INFO     | total number of processed events: 400 (read)
[2025-07-28 08:33:45] 2025-07-28 12:33:07,193 | INFO     | executing command: lscpu
[2025-07-28 08:33:45] 2025-07-28 12:33:07,268 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 08:33:45] 2025-07-28 12:33:07,512 | INFO     | number of running child processes to parent process 2311881: 1
[2025-07-28 08:33:45] 2025-07-28 12:33:07,512 | INFO     | maximum number of monitored processes: 6
[2025-07-28 08:33:45] 2025-07-28 12:33:08,384 | INFO     | PID=2304123 has CPU usage=12.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 08:33:45] 2025-07-28 12:33:08,384 | INFO     | .. there are 12 such processes running
[2025-07-28 08:33:45] 2025-07-28 12:33:10,015 | INFO     | monitor loop #415: job 0:6745060389 is in state 'finished'
[2025-07-28 08:33:45] 2025-07-28 12:33:10,015 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 08:33:45] 2025-07-28 12:33:12,398 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 08:33:45] 2025-07-28 12:33:12,408 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2839.0974821428567
[2025-07-28 08:33:45] 2025-07-28 12:33:12,420 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745060389/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 08:33:45] 2025-07-28 12:33:12,421 | INFO     | extracted standard info from prmon json
[2025-07-28 08:33:45] 2025-07-28 12:33:12,421 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 08:33:45] 2025-07-28 12:33:12,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 08:33:45] 2025-07-28 12:33:12,422 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 08:33:45] 2025-07-28 12:33:12,422 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 08:33:45] 2025-07-28 12:33:12,425 | INFO     | fitting pss+swap vs Time
[2025-07-28 08:33:45] 2025-07-28 12:33:12,426 | INFO     | sum of square deviations: 226018700.10000023
[2025-07-28 08:33:45] 2025-07-28 12:33:12,426 | INFO     | sum of deviations: -21113677222.1
[2025-07-28 08:33:45] 2025-07-28 12:33:12,426 | INFO     | mean x: 1753703085.5666666
[2025-07-28 08:33:45] 2025-07-28 12:33:12,426 | INFO     | mean y: 2518631.7666666666
[2025-07-28 08:33:45] 2025-07-28 12:33:12,427 | INFO     | -- intersect: 163825781378.0485
[2025-07-28 08:33:45] 2025-07-28 12:33:12,427 | INFO     | intersect: 163825781378.0485
[2025-07-28 08:33:45] 2025-07-28 12:33:12,427 | INFO     | chi2: 0.19132309514637372
[2025-07-28 08:33:45] 2025-07-28 12:33:12,427 | INFO     | -- intersect: 163825781378.0485
[2025-07-28 08:33:45] 2025-07-28 12:33:12,427 | INFO     | current memory leak: -93.42 B/s (using 90 data points, chi2=0.19)
[2025-07-28 08:33:45] 2025-07-28 12:33:12,428 | INFO     | could have reported an average CPU frequency of 2802 MHz (7 samples)
[2025-07-28 08:33:45] 2025-07-28 12:33:12,428 | INFO     | ..............................
[2025-07-28 08:33:45] 2025-07-28 12:33:12,428 | INFO     | . Timing measurements:
[2025-07-28 08:33:45] 2025-07-28 12:33:12,428 | INFO     | . get job = 0 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,428 | INFO     | . initial setup = 2 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,429 | INFO     | . payload setup = 5 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,429 | INFO     | . stage-in = 0 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,429 | INFO     | . payload execution = 5914 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,429 | INFO     | . stage-out = 0 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,429 | INFO     | . log creation = 0 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,429 | INFO     | ..............................
[2025-07-28 08:33:45] 2025-07-28 12:33:12,547 | INFO     | 
[2025-07-28 08:33:45] 2025-07-28 12:33:12,547 | INFO     | job summary report
[2025-07-28 08:33:45] 2025-07-28 12:33:12,547 | INFO     | --------------------------------------------------
[2025-07-28 08:33:45] 2025-07-28 12:33:12,547 | INFO     | PanDA job id: 6745060389
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | task id: 45743349
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | errors: (none)
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | pilot state: finished 
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | transexitcode: 0
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | exeerrorcode: 0
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | exeerrordiag: 
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | exitcode: 0
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | exitmsg: OK
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | cpuconsumptiontime: 46330 s
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | nevents: 400
[2025-07-28 08:33:45] 2025-07-28 12:33:12,548 | INFO     | neventsw: 0
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | pid: 2311881
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | pgrp: 2311881
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | corecount: 12
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | event service: False
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | sizes: {0: 2397475, 4: 2397737, 11: 2397765, 5923: 2424666, 5925: 2433664, 5929: 2433720, 5936: 2434042}
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | --------------------------------------------------
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | 
[2025-07-28 08:33:45] 2025-07-28 12:33:12,549 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 08:33:45] 2025-07-28 12:33:12,572 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 08:33:45] 2025-07-28 12:33:12,574 | INFO     | job 6745060389 has completed (purged errors)
[2025-07-28 08:33:45] 2025-07-28 12:33:12,575 | INFO     | overall cleanup function is called
[2025-07-28 08:33:45] 2025-07-28 12:33:13,583 | INFO     | --- collectZombieJob: --- 10, [2311881]
[2025-07-28 08:33:45] 2025-07-28 12:33:13,584 | INFO     | zombie collector waiting for pid 2311881
[2025-07-28 08:33:45] 2025-07-28 12:33:13,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 08:33:45] 2025-07-28 12:33:13,585 | INFO     | collected zombie processes
[2025-07-28 08:33:45] 2025-07-28 12:33:13,585 | INFO     | will attempt to kill all subprocesses of pid=2311881
[2025-07-28 08:33:45] 2025-07-28 12:33:13,867 | INFO     | process IDs to be killed: [2311881] (in reverse order)
[2025-07-28 08:33:45] 2025-07-28 12:33:13,957 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 08:33:45] 2025-07-28 12:33:13,957 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 08:33:45] 2025-07-28 12:33:13,968 | INFO     | did not find any defunct processes belonging to 2311881
[2025-07-28 08:33:45] 2025-07-28 12:33:13,979 | INFO     | did not find any defunct processes belonging to 2311881
[2025-07-28 08:33:45] 2025-07-28 12:33:13,979 | INFO     | ready for new job
[2025-07-28 08:33:45] 2025-07-28 12:33:13,979 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 08:33:45] 2025-07-28 12:33:13,981 | INFO     | ***************************************
[2025-07-28 08:33:45] 2025-07-28 12:33:13,981 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 08:33:45] 2025-07-28 12:33:13,981 | INFO     | ***************************************
[2025-07-28 08:33:45] 2025-07-28 12:33:13,982 | INFO     | 
[2025-07-28 08:33:45] 2025-07-28 12:33:13,998 | INFO     | architecture information:
[2025-07-28 08:33:45] 2025-07-28 12:33:13,999 | INFO     | executing command: cat /etc/os-release
[2025-07-28 08:33:45] 2025-07-28 12:33:14,014 | INFO     | cat /etc/os-release:
[2025-07-28 08:33:45] NAME="CentOS Linux"
[2025-07-28 08:33:45] VERSION="7 (Core)"
[2025-07-28 08:33:45] ID="centos"
[2025-07-28 08:33:45] ID_LIKE="rhel fedora"
[2025-07-28 08:33:45] VERSION_ID="7"
[2025-07-28 08:33:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 08:33:45] ANSI_COLOR="0;31"
[2025-07-28 08:33:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 08:33:45] HOME_URL="https://www.centos.org/"
[2025-07-28 08:33:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 08:33:45] 
[2025-07-28 08:33:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 08:33:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 08:33:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 08:33:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 08:33:45] 
[2025-07-28 08:33:45] 2025-07-28 12:33:14,015 | INFO     | ***************************************
[2025-07-28 08:33:45] 2025-07-28 12:33:14,517 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 08:33:45] 2025-07-28 12:33:14,535 | INFO     | sufficient remaining disk space (71108132864 B)
[2025-07-28 08:33:45] 2025-07-28 12:33:14,536 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 08:33:45] 2025-07-28 12:33:14,536 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 08:33:45] 2025-07-28 12:33:14,536 | INFO     | update_server=False
[2025-07-28 08:33:45] 2025-07-28 12:33:14,536 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 08:33:45] 2025-07-28 12:33:14,536 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:33:45] 2025-07-28 12:33:14,768 | INFO     | all payload control threads have been joined
[2025-07-28 08:33:45] 2025-07-28 12:33:14,843 | INFO     | all data control threads have been joined
[2025-07-28 08:33:45] 2025-07-28 12:33:15,026 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 08:33:45] 2025-07-28 12:33:15,026 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 08:33:45] 2025-07-28 12:33:15,026 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 08:33:45] 2025-07-28 12:33:15,027 | INFO     | will abort loop
[2025-07-28 08:33:45] 2025-07-28 12:33:15,383 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 08:33:45] 2025-07-28 12:33:15,541 | INFO     | [job] retrieve thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:15,543 | INFO     | [job] queue monitor thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:15,643 | INFO     | [data] copytool_in thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:15,773 | INFO     | [payload] control thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:15,822 | INFO     | all job control threads have been joined
[2025-07-28 08:33:45] 2025-07-28 12:33:15,848 | INFO     | [data] control thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:15,945 | INFO     | [payload] validate_post thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:16,032 | INFO     | [job] job monitor thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:16,050 | INFO     | [job] validate thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:16,054 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:16,330 | INFO     | [payload] failed_post thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:16,347 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 08:33:45] 2025-07-28 12:33:16,430 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:16,632 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:16,827 | INFO     | [job] control thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:17,389 | INFO     | [data] copytool_out thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:20,352 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:25,586 | INFO     | job.realtimelogging is not enabled
[2025-07-28 08:33:45] 2025-07-28 12:33:26,591 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 08:33:45] 2025-07-28 12:33:27,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140100205311808)>', '<ExcThread(monitor, started 140099710854912)>']
[2025-07-28 08:33:45] 2025-07-28 12:33:32,502 | INFO     | all workflow threads have been joined
[2025-07-28 08:33:45] 2025-07-28 12:33:32,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 08:33:45] 2025-07-28 12:33:32,503 | INFO     | traces error code: 0
[2025-07-28 08:33:45] 2025-07-28 12:33:32,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 08:33:45] 2025-07-28 12:33:44,764 | INFO     | PID=2304123 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 08:33:45] 2025-07-28 12:33:44,765 | INFO     | .. there are 12 such processes running
[2025-07-28 08:33:45] 2025-07-28 12:33:44,766 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 08:33:45] 2025-07-28 12:33:44,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 08:33:45] 2025-07-28 12:33:44,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 08:33:45] 2025-07-28 12:33:44,766 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 08:33:45] 2025-07-28 12:33:44,766 | INFO     | [monitor] control thread has ended
[2025-07-28 08:33:45] 2025-07-28 12:33:44,931 [wrapper] ==== pilot stdout END ====
[2025-07-28 08:33:45] 2025-07-28 12:33:44,936 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 08:33:45] 2025-07-28 12:33:44,941 [wrapper] pilotpid: 2304123
[2025-07-28 08:33:45] 2025-07-28 12:33:44,944 [wrapper] Pilot exit status: 0
[2025-07-28 08:33:45] 2025-07-28 12:33:44,963 [wrapper] pandaids: 6745060389
[2025-07-28 08:33:45] 2025-07-28 12:33:45,044 [wrapper] cleanup supervisor_pilot 2633626 2304125
[2025-07-28 08:33:45] 2025-07-28 12:33:45,050 [wrapper] Test setup, not cleaning
[2025-07-28 08:33:45] 2025-07-28 12:33:45,056 [wrapper] apfmon messages muted
[2025-07-28 08:33:45] 2025-07-28 12:33:45,060 [wrapper] ==== wrapper stdout END ====
[2025-07-28 08:33:45] 2025-07-28 12:33:45,064 [wrapper] ==== wrapper stderr END ====
[2025-07-28 08:33:45]  *** Error codes and diagnostics ***
[2025-07-28 08:33:45]     "exeErrorCode": 0,
[2025-07-28 08:33:45]     "exeErrorDiag": "",
[2025-07-28 08:33:45]     "pilotErrorCode": 0,
[2025-07-28 08:33:45]     "pilotErrorDiag": "",
[2025-07-28 08:33:45]  *** Listing of results directory ***
[2025-07-28 08:33:45] total 428468
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 14:56 pilot3.tar.gz
[2025-07-28 08:33:45] -rwx------. 1 boincer umatlas     36292 Jul 25 15:01 runpilot2-wrapper.sh
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 15:01 queuedata.json
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas       100 Jul 28 06:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 08:33:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 06:53 run_atlas
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas       105 Jul 28 06:53 job.xml
[2025-07-28 08:33:45] -rw-r--r--. 2 boincer umatlas 226763964 Jul 28 06:53 EVNT.45743347._001438.pool.root.1
[2025-07-28 08:33:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 06:53 start_atlas.sh
[2025-07-28 08:33:45] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 06:53 shared
[2025-07-28 08:33:45] -rw-r--r--. 2 boincer umatlas    542890 Jul 28 06:53 input.tar.gz
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas         0 Jul 28 06:53 boinc_lockfile
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas      2563 Jul 28 06:53 pandaJob.out
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas    978460 Jul 28 06:53 agis_schedconf.cvmfs.json
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas   1593052 Jul 28 06:54 agis_ddmendpoints.agis.ALL.json
[2025-07-28 08:33:45] drwx------. 4 boincer umatlas      4096 Jul 28 06:54 pilot3
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas      6839 Jul 28 08:29 init_data.xml
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas 206249740 Jul 28 08:32 HITS.45743349._025580.pool.root.1
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas       529 Jul 28 08:32 boinc_task_state.xml
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas        95 Jul 28 08:32 pilot_heartbeat.json
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas      1037 Jul 28 08:32 memory_monitor_summary.json
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas    369503 Jul 28 08:33 log.45743349._025580.job.log.tgz.1
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas      7818 Jul 28 08:33 heartbeat.json
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas        27 Jul 28 08:33 wrapper_checkpoint.txt
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 08:33 boinc_mmap_file
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas       823 Jul 28 08:33 pilotlog.txt
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas    562285 Jul 28 08:33 log.45743349._025580.job.log.1
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas       357 Jul 28 08:33 output.list
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas       620 Jul 28 08:33 runtime_log
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas    952320 Jul 28 08:33 result.tar.gz
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas      8662 Jul 28 08:33 runtime_log.err
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas       653 Jul 28 08:33 KAZMDmdqcz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmrQzKDmENQR8m.diag
[2025-07-28 08:33:45] -rw-r--r--. 1 boincer umatlas     21948 Jul 28 08:33 stderr.txt
[2025-07-28 08:33:45] HITS file was successfully produced:
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas 206249740 Jul 28 08:32 shared/HITS.pool.root.1
[2025-07-28 08:33:45]  *** Contents of shared directory: ***
[2025-07-28 08:33:45] total 424352
[2025-07-28 08:33:45] -rw-r--r--. 2 boincer umatlas 226763964 Jul 28 06:53 ATLAS.root_0
[2025-07-28 08:33:45] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 06:53 start_atlas.sh
[2025-07-28 08:33:45] -rw-r--r--. 2 boincer umatlas    542890 Jul 28 06:53 input.tar.gz
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas 206249740 Jul 28 08:32 HITS.pool.root.1
[2025-07-28 08:33:45] -rw-------. 1 boincer umatlas    952320 Jul 28 08:33 result.tar.gz
08:33:47 (2300344): run_atlas exited; CPU time 46391.148987
08:33:47 (2300344): called boinc_finish(0)

</stderr_txt>
]]>

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