Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:55:41 (723657): wrapper (7.7.26015): starting
04:55:41 (723657): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 04:55:42] Arguments: --nthreads 8
[2025-07-28 04:55:42] Threads: 8
[2025-07-28 04:55:42] Checking for CVMFS
[2025-07-28 04:55:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 04:55:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 04:55:42] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 04:55:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 04:55:42] 2.13.1.0 133096 9396 214652 148841 3 276 31143963 40960000 14594 16776704 0 25625751 99.880 15964698 19146 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 04:55:42] CVMFS is ok
[2025-07-28 04:55:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 04:55:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 04:55:42] Further information can be found at the LHC@home message board.
[2025-07-28 04:55:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 04:55:42] Checking for apptainer binary...
[2025-07-28 04:55:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 04:55:42] Running /usr/bin/apptainer --version
[2025-07-28 04:55:42] apptainer version 1.4.1-1.el9
[2025-07-28 04:55:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 04:55:42] c-211-35-3.aglt2.org
[2025-07-28 04:55:42] apptainer works
[2025-07-28 04:55:42] Set ATHENA_PROC_NUMBER=8
[2025-07-28 04:55:42] Set ATHENA_CORE_NUMBER=8
[2025-07-28 04:55:42] Starting ATLAS job with PandaID=6748548838
[2025-07-28 04:55:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:10:03 (762456): wrapper (7.7.26015): starting
05:10:03 (762456): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 05:10:03] Arguments: --nthreads 8
[2025-07-28 05:10:03] Threads: 8
[2025-07-28 05:10:03] This job has been restarted, cleaning up previous attempt
[2025-07-28 05:10:03] Checking for CVMFS
[2025-07-28 05:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 05:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 05:10:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 05:10:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 05:10:03] 2.13.1.0 133096 9411 214652 148841 1 284 31143963 40960000 14577 16776704 0 25717104 99.880 15964700 19146 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 05:10:03] CVMFS is ok
[2025-07-28 05:10:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 05:10:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 05:10:03] Further information can be found at the LHC@home message board.
[2025-07-28 05:10:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 05:10:03] Checking for apptainer binary...
[2025-07-28 05:10:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 05:10:03] Running /usr/bin/apptainer --version
[2025-07-28 05:10:04] apptainer version 1.4.1-1.el9
[2025-07-28 05:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 05:10:04] c-211-35-3.aglt2.org
[2025-07-28 05:10:04] apptainer works
[2025-07-28 05:10:04] Set ATHENA_PROC_NUMBER=8
[2025-07-28 05:10:04] Set ATHENA_CORE_NUMBER=8
[2025-07-28 05:10:04] Starting ATLAS job with PandaID=6748548838
[2025-07-28 05:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 07:17:26]  *** The last 200 lines of the pilot log: ***
[2025-07-28 07:17:26] 2025-07-28 11:16:34,946 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 07:17:26] 2025-07-28 11:16:34,949 | INFO     | fitting pss+swap vs Time
[2025-07-28 07:17:26] 2025-07-28 11:16:34,949 | INFO     | sum of square deviations: 591173875.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,950 | INFO     | sum of deviations: 8426552078.000001
[2025-07-28 07:17:26] 2025-07-28 11:16:34,950 | INFO     | mean x: 1753697605.5
[2025-07-28 07:17:26] 2025-07-28 11:16:34,951 | INFO     | mean y: 2487293.4516129033
[2025-07-28 07:17:26] 2025-07-28 11:16:34,951 | INFO     | -- intersect: -24994598719.20355
[2025-07-28 07:17:26] 2025-07-28 11:16:34,951 | INFO     | intersect: -24994598719.20355
[2025-07-28 07:17:26] 2025-07-28 11:16:34,951 | INFO     | chi2: 2.201180146974857
[2025-07-28 07:17:26] 2025-07-28 11:16:34,951 | INFO     | sum of square deviations: 522502820.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,952 | INFO     | sum of deviations: 16216357974.000002
[2025-07-28 07:17:26] 2025-07-28 11:16:34,953 | INFO     | mean x: 1753697453.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,953 | INFO     | mean y: 2504001.2268907563
[2025-07-28 07:17:26] 2025-07-28 11:16:34,953 | INFO     | -- intersect: -54425117415.13225
[2025-07-28 07:17:26] 2025-07-28 11:16:34,953 | INFO     | intersect: -54425117415.13225
[2025-07-28 07:17:26] 2025-07-28 11:16:34,953 | INFO     | chi2: 1.4464526085373766
[2025-07-28 07:17:26] 2025-07-28 11:16:34,953 | INFO     | current chi2=1.4464526085373766 (change=34.28740439417117 %)
[2025-07-28 07:17:26] 2025-07-28 11:16:34,954 | INFO     | sum of square deviations: 459366752.5
[2025-07-28 07:17:26] 2025-07-28 11:16:34,954 | INFO     | sum of deviations: 15681602450.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,954 | INFO     | mean x: 1753697300.5
[2025-07-28 07:17:26] 2025-07-28 11:16:34,955 | INFO     | mean y: 2502708.298245614
[2025-07-28 07:17:26] 2025-07-28 11:16:34,955 | INFO     | -- intersect: -59864224115.99274
[2025-07-28 07:17:26] 2025-07-28 11:16:34,955 | INFO     | intersect: -59864224115.99274
[2025-07-28 07:17:26] 2025-07-28 11:16:34,955 | INFO     | chi2: 1.4478917486478777
[2025-07-28 07:17:26] 2025-07-28 11:16:34,955 | INFO     | current chi2=1.4478917486478777 (change=-0.09949445298151859 %)
[2025-07-28 07:17:26] 2025-07-28 11:16:34,955 | INFO     | right removable region: 113
[2025-07-28 07:17:26] 2025-07-28 11:16:34,956 | INFO     | sum of square deviations: 522502820.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,956 | INFO     | sum of deviations: -10658087689.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,956 | INFO     | mean x: 1753697758.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,957 | INFO     | mean y: 2528952.4285714286
[2025-07-28 07:17:26] 2025-07-28 11:16:34,957 | INFO     | -- intersect: 35774708105.00559
[2025-07-28 07:17:26] 2025-07-28 11:16:34,957 | INFO     | intersect: 35774708105.00559
[2025-07-28 07:17:26] 2025-07-28 11:16:34,957 | INFO     | chi2: 0.7909493022909212
[2025-07-28 07:17:26] 2025-07-28 11:16:34,957 | INFO     | current chi2=0.7909493022909212 (change=64.06703452336944 %)
[2025-07-28 07:17:26] 2025-07-28 11:16:34,957 | INFO     | sum of square deviations: 459366752.5
[2025-07-28 07:17:26] 2025-07-28 11:16:34,958 | INFO     | sum of deviations: -10969391490.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,958 | INFO     | mean x: 1753697910.5
[2025-07-28 07:17:26] 2025-07-28 11:16:34,958 | INFO     | mean y: 2529681.964912281
[2025-07-28 07:17:26] 2025-07-28 11:16:34,959 | INFO     | -- intersect: 41879741802.294586
[2025-07-28 07:17:26] 2025-07-28 11:16:34,959 | INFO     | intersect: 41879741802.294586
[2025-07-28 07:17:26] 2025-07-28 11:16:34,959 | INFO     | chi2: 0.7878221662723929
[2025-07-28 07:17:26] 2025-07-28 11:16:34,959 | INFO     | current chi2=0.7878221662723929 (change=0.39536491270310525 %)
[2025-07-28 07:17:26] 2025-07-28 11:16:34,960 | INFO     | left removable region: 20
[2025-07-28 07:17:26] 2025-07-28 11:16:34,960 | INFO     | sum of square deviations: 249388862.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,960 | INFO     | sum of deviations: -2519296339.9999995
[2025-07-28 07:17:26] 2025-07-28 11:16:34,960 | INFO     | mean x: 1753697880.0
[2025-07-28 07:17:26] 2025-07-28 11:16:34,961 | INFO     | mean y: 2550085.2365591396
[2025-07-28 07:17:26] 2025-07-28 11:16:34,961 | INFO     | -- intersect: 17718195503.875015
[2025-07-28 07:17:26] 2025-07-28 11:16:34,961 | INFO     | intersect: 17718195503.875015
[2025-07-28 07:17:26] 2025-07-28 11:16:34,961 | INFO     | chi2: 0.0028690753193494813
[2025-07-28 07:17:26] 2025-07-28 11:16:34,961 | INFO     | -- intersect: 17718195503.875015
[2025-07-28 07:17:26] 2025-07-28 11:16:34,961 | INFO     | current memory leak: -10.10 B/s (using 93 data points, chi2=0.00)
[2025-07-28 07:17:26] 2025-07-28 11:16:34,962 | INFO     | could have reported an average CPU frequency of 2516 MHz (8 samples)
[2025-07-28 07:17:26] 2025-07-28 11:16:34,962 | INFO     | ..............................
[2025-07-28 07:17:26] 2025-07-28 11:16:34,962 | INFO     | . Timing measurements:
[2025-07-28 07:17:26] 2025-07-28 11:16:34,962 | INFO     | . get job = 0 s
[2025-07-28 07:17:26] 2025-07-28 11:16:34,963 | INFO     | . initial setup = 1 s
[2025-07-28 07:17:26] 2025-07-28 11:16:34,963 | INFO     | . payload setup = 10 s
[2025-07-28 07:17:26] 2025-07-28 11:16:34,963 | INFO     | . stage-in = 0 s
[2025-07-28 07:17:26] 2025-07-28 11:16:34,963 | INFO     | . payload execution = 7535 s
[2025-07-28 07:17:26] 2025-07-28 11:16:34,963 | INFO     | . stage-out = 0 s
[2025-07-28 07:17:26] 2025-07-28 11:16:34,963 | INFO     | . log creation = 0 s
[2025-07-28 07:17:26] 2025-07-28 11:16:34,963 | INFO     | ..............................
[2025-07-28 07:17:26] 2025-07-28 11:16:35,445 | INFO     | 
[2025-07-28 07:17:26] 2025-07-28 11:16:35,445 | INFO     | job summary report
[2025-07-28 07:17:26] 2025-07-28 11:16:35,445 | INFO     | --------------------------------------------------
[2025-07-28 07:17:26] 2025-07-28 11:16:35,445 | INFO     | PanDA job id: 6748548838
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | task id: 45743349
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | errors: (none)
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | pilot state: finished 
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | transexitcode: 0
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | exeerrorcode: 0
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | exeerrordiag: 
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | exitcode: 0
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | exitmsg: OK
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | cpuconsumptiontime: 55776 s
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | nevents: 400
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | neventsw: 0
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | pid: 785268
[2025-07-28 07:17:26] 2025-07-28 11:16:35,446 | INFO     | pgrp: 785268
[2025-07-28 07:17:26] 2025-07-28 11:16:35,447 | INFO     | corecount: 8
[2025-07-28 07:17:26] 2025-07-28 11:16:35,447 | INFO     | event service: False
[2025-07-28 07:17:26] 2025-07-28 11:16:35,447 | INFO     | sizes: {0: 2396596, 1: 2397452, 7: 2397714, 12: 2397742, 7549: 2425100, 7550: 2434282, 7558: 2434420}
[2025-07-28 07:17:26] 2025-07-28 11:16:35,447 | INFO     | --------------------------------------------------
[2025-07-28 07:17:26] 2025-07-28 11:16:35,447 | INFO     | 
[2025-07-28 07:17:26] 2025-07-28 11:16:35,447 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,475 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 07:17:26] 2025-07-28 11:16:35,476 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,477 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 07:17:26] 2025-07-28 11:16:35,477 | INFO     | job 6748548838 has completed (purged errors)
[2025-07-28 07:17:26] 2025-07-28 11:16:35,477 | INFO     | overall cleanup function is called
[2025-07-28 07:17:26] 2025-07-28 11:16:36,487 | INFO     | --- collectZombieJob: --- 10, [785268]
[2025-07-28 07:17:26] 2025-07-28 11:16:36,487 | INFO     | zombie collector waiting for pid 785268
[2025-07-28 07:17:26] 2025-07-28 11:16:36,488 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 07:17:26] 2025-07-28 11:16:36,488 | INFO     | collected zombie processes
[2025-07-28 07:17:26] 2025-07-28 11:16:36,488 | INFO     | will attempt to kill all subprocesses of pid=785268
[2025-07-28 07:17:26] 2025-07-28 11:16:36,826 | INFO     | process IDs to be killed: [785268] (in reverse order)
[2025-07-28 07:17:26] 2025-07-28 11:16:36,935 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 07:17:26] 2025-07-28 11:16:36,937 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 07:17:26] 2025-07-28 11:16:36,952 | INFO     | did not find any defunct processes belonging to 785268
[2025-07-28 07:17:26] 2025-07-28 11:16:36,967 | INFO     | did not find any defunct processes belonging to 785268
[2025-07-28 07:17:26] 2025-07-28 11:16:36,967 | INFO     | ready for new job
[2025-07-28 07:17:26] 2025-07-28 11:16:36,968 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 07:17:26] 2025-07-28 11:16:36,969 | INFO     | ***************************************
[2025-07-28 07:17:26] 2025-07-28 11:16:36,969 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 07:17:26] 2025-07-28 11:16:36,970 | INFO     | ***************************************
[2025-07-28 07:17:26] 2025-07-28 11:16:36,970 | INFO     | 
[2025-07-28 07:17:26] 2025-07-28 11:16:36,975 | INFO     | architecture information:
[2025-07-28 07:17:26] 2025-07-28 11:16:36,976 | INFO     | executing command: cat /etc/os-release
[2025-07-28 07:17:26] 2025-07-28 11:16:37,004 | INFO     | cat /etc/os-release:
[2025-07-28 07:17:26] NAME="CentOS Linux"
[2025-07-28 07:17:26] VERSION="7 (Core)"
[2025-07-28 07:17:26] ID="centos"
[2025-07-28 07:17:26] ID_LIKE="rhel fedora"
[2025-07-28 07:17:26] VERSION_ID="7"
[2025-07-28 07:17:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 07:17:26] ANSI_COLOR="0;31"
[2025-07-28 07:17:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 07:17:26] HOME_URL="https://www.centos.org/"
[2025-07-28 07:17:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 07:17:26] 
[2025-07-28 07:17:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 07:17:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 07:17:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 07:17:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 07:17:26] 
[2025-07-28 07:17:26] 2025-07-28 11:16:37,004 | INFO     | ***************************************
[2025-07-28 07:17:26] 2025-07-28 11:16:37,507 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-28 07:17:26] 2025-07-28 11:16:37,531 | INFO     | sufficient remaining disk space (129471873024 B)
[2025-07-28 07:17:26] 2025-07-28 11:16:37,531 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 07:17:26] 2025-07-28 11:16:37,531 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 07:17:26] 2025-07-28 11:16:37,531 | INFO     | update_server=False
[2025-07-28 07:17:26] 2025-07-28 11:16:37,531 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 07:17:26] 2025-07-28 11:16:37,532 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 07:17:26] 2025-07-28 11:16:37,563 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 07:17:26] 2025-07-28 11:16:37,580 | INFO     | all data control threads have been joined
[2025-07-28 07:17:26] 2025-07-28 11:16:37,837 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 07:17:26] 2025-07-28 11:16:37,837 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 07:17:26] 2025-07-28 11:16:37,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:17:26] 2025-07-28 11:16:37,838 | INFO     | will abort loop
[2025-07-28 07:17:26] 2025-07-28 11:16:38,512 | INFO     | all payload control threads have been joined
[2025-07-28 07:17:26] 2025-07-28 11:16:38,536 | INFO     | [job] retrieve thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:38,586 | INFO     | [data] control thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:38,776 | INFO     | all job control threads have been joined
[2025-07-28 07:17:26] 2025-07-28 11:16:38,796 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:38,805 | INFO     | [data] copytool_in thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:38,842 | INFO     | [job] job monitor thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,105 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,517 | INFO     | [payload] control thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,537 | INFO     | [data] copytool_out thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,563 | INFO     | [payload] failed_post thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,608 | INFO     | [job] validate thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,681 | INFO     | [payload] validate_post thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,781 | INFO     | [job] control thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:39,906 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:40,033 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:40,092 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:17:26] 2025-07-28 11:16:41,097 | INFO     | [job] queue monitor thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:41,568 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 07:17:26] 2025-07-28 11:16:41,899 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140119675836224)>', '<ExcThread(monitor, started 140118736234240)>']
[2025-07-28 07:17:26] 2025-07-28 11:16:46,924 | INFO     | all workflow threads have been joined
[2025-07-28 07:17:26] 2025-07-28 11:16:46,925 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 07:17:26] 2025-07-28 11:16:46,925 | INFO     | traces error code: 0
[2025-07-28 07:17:26] 2025-07-28 11:16:46,926 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 07:17:26] 2025-07-28 11:17:08,430 | INFO     | PID=772493 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 07:17:26] 2025-07-28 11:17:08,431 | INFO     | .. there are 14 such processes running
[2025-07-28 07:17:26] 2025-07-28 11:17:08,432 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 07:17:26] 2025-07-28 11:17:08,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 07:17:26] 2025-07-28 11:17:08,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 07:17:26] 2025-07-28 11:17:08,432 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 07:17:26] 2025-07-28 11:17:08,433 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 07:17:26] 2025-07-28 11:17:08,433 | INFO     | [monitor] control thread has ended
[2025-07-28 07:17:26] 2025-07-28 11:17:08,644 [wrapper] ==== pilot stdout END ====
[2025-07-28 07:17:26] 2025-07-28 11:17:08,649 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 07:17:26] 2025-07-28 11:17:08,653 [wrapper] pilotpid: 772493
[2025-07-28 07:17:26] 2025-07-28 11:17:08,657 [wrapper] Pilot exit status: 0
[2025-07-28 07:17:26] 2025-07-28 11:17:08,673 [wrapper] pandaids: 6748548838 6748548838
[2025-07-28 07:17:26] 2025-07-28 11:17:08,741 [wrapper] cleanup supervisor_pilot  978491 772494
[2025-07-28 07:17:26] 2025-07-28 11:17:08,745 [wrapper] Test setup, not cleaning
[2025-07-28 07:17:26] 2025-07-28 11:17:08,750 [wrapper] apfmon messages muted
[2025-07-28 07:17:26] 2025-07-28 11:17:08,754 [wrapper] ==== wrapper stdout END ====
[2025-07-28 07:17:26] 2025-07-28 11:17:08,758 [wrapper] ==== wrapper stderr END ====
[2025-07-28 07:17:26]  *** Error codes and diagnostics ***
[2025-07-28 07:17:26]     "exeErrorCode": 0,
[2025-07-28 07:17:26]     "exeErrorDiag": "",
[2025-07-28 07:17:26]     "pilotErrorCode": 0,
[2025-07-28 07:17:26]     "pilotErrorDiag": "",
[2025-07-28 07:17:26]  *** Listing of results directory ***
[2025-07-28 07:17:26] total 490316
[2025-07-28 07:17:26] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 03:58 pilot3.tar.gz
[2025-07-28 07:17:26] -rwx------. 1 boincer umatlas     36292 Jul 28 04:55 runpilot2-wrapper.sh
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 04:55 queuedata.json
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas       100 Jul 28 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 07:17:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 04:55 run_atlas
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas       105 Jul 28 04:55 job.xml
[2025-07-28 07:17:26] -rw-r--r--. 3 boincer umatlas 144438825 Jul 28 04:55 EVNT.45743347._002968.pool.root.1
[2025-07-28 07:17:26] -rw-r--r--. 3 boincer umatlas 144438825 Jul 28 04:55 ATLAS.root_0
[2025-07-28 07:17:26] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 04:55 start_atlas.sh
[2025-07-28 07:17:26] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 04:55 shared
[2025-07-28 07:17:26] -rw-r--r--. 2 boincer umatlas    542892 Jul 28 04:55 input.tar.gz
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas         0 Jul 28 04:55 boinc_lockfile
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas   1593052 Jul 28 04:55 agis_ddmendpoints.agis.ALL.json
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 05:10 pandaJob.out
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas    978452 Jul 28 05:10 agis_schedconf.cvmfs.json
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas      6856 Jul 28 07:09 init_data.xml
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas 207228914 Jul 28 07:15 HITS.45743349._056341.pool.root.1
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas       530 Jul 28 07:15 boinc_task_state.xml
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas      1057 Jul 28 07:16 memory_monitor_summary.json
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas    336722 Jul 28 07:16 log.45743349._056341.job.log.tgz.1
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas      7830 Jul 28 07:16 heartbeat.json
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas        96 Jul 28 07:17 pilot_heartbeat.json
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas       892 Jul 28 07:17 pilotlog.txt
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas    713690 Jul 28 07:17 log.45743349._056341.job.log.1
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas       357 Jul 28 07:17 output.list
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas       620 Jul 28 07:17 runtime_log
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas   1064960 Jul 28 07:17 result.tar.gz
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas      8755 Jul 28 07:17 runtime_log.err
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas       779 Jul 28 07:17 pFALDmgoY07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmwcWLDmgyre0m.diag
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas        27 Jul 28 07:17 wrapper_checkpoint.txt
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 07:17 boinc_mmap_file
[2025-07-28 07:17:26] -rw-r--r--. 1 boincer umatlas     23069 Jul 28 07:17 stderr.txt
[2025-07-28 07:17:26] HITS file was successfully produced:
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas 207228914 Jul 28 07:15 shared/HITS.pool.root.1
[2025-07-28 07:17:26]  *** Contents of shared directory: ***
[2025-07-28 07:17:26] total 345024
[2025-07-28 07:17:26] -rw-r--r--. 3 boincer umatlas 144438825 Jul 28 04:55 ATLAS.root_0
[2025-07-28 07:17:26] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 04:55 start_atlas.sh
[2025-07-28 07:17:26] -rw-r--r--. 2 boincer umatlas    542892 Jul 28 04:55 input.tar.gz
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas 207228914 Jul 28 07:15 HITS.pool.root.1
[2025-07-28 07:17:26] -rw-------. 1 boincer umatlas   1064960 Jul 28 07:17 result.tar.gz
07:17:28 (762456): run_atlas exited; CPU time 56015.662823
07:17:28 (762456): called boinc_finish(0)

</stderr_txt>
]]>

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