Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
04:55:31 (720928): wrapper (7.7.26015): starting
04:55:31 (720928): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 04:55:31] Arguments: --nthreads 8
[2025-07-28 04:55:31] Threads: 8
[2025-07-28 04:55:31] Checking for CVMFS
[2025-07-28 04:55:32] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 04:55:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 04:55:32] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 04:55:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 04:55:32] 2.13.1.0 133096 9396 214652 148841 3 272 31143963 40960000 14577 16776704 0 25618817 99.880 15964698 19146 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 04:55:32] CVMFS is ok
[2025-07-28 04:55:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 04:55:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 04:55:32] Further information can be found at the LHC@home message board.
[2025-07-28 04:55:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 04:55:32] Checking for apptainer binary...
[2025-07-28 04:55:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 04:55:32] Running /usr/bin/apptainer --version
[2025-07-28 04:55:32] apptainer version 1.4.1-1.el9
[2025-07-28 04:55:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 04:55:32] c-211-35-3.aglt2.org
[2025-07-28 04:55:32] apptainer works
[2025-07-28 04:55:32] Set ATHENA_PROC_NUMBER=8
[2025-07-28 04:55:32] Set ATHENA_CORE_NUMBER=8
[2025-07-28 04:55:32] Starting ATLAS job with PandaID=6744952491
[2025-07-28 04:55:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:10:03 (762455): wrapper (7.7.26015): starting
05:10:03 (762455): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 05:10:03] Arguments: --nthreads 8
[2025-07-28 05:10:03] Threads: 8
[2025-07-28 05:10:03] This job has been restarted, cleaning up previous attempt
[2025-07-28 05:10:03] Checking for CVMFS
[2025-07-28 05:10:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 05:10:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 05:10:03] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 05:10:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 05:10:03] 2.13.1.0 133096 9411 214652 148841 1 284 31143963 40960000 14577 16776704 0 25717104 99.880 15964700 19146 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 05:10:03] CVMFS is ok
[2025-07-28 05:10:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 05:10:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 05:10:03] Further information can be found at the LHC@home message board.
[2025-07-28 05:10:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 05:10:03] Checking for apptainer binary...
[2025-07-28 05:10:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 05:10:03] Running /usr/bin/apptainer --version
[2025-07-28 05:10:04] apptainer version 1.4.1-1.el9
[2025-07-28 05:10:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 05:10:04] c-211-35-3.aglt2.org
[2025-07-28 05:10:04] apptainer works
[2025-07-28 05:10:04] Set ATHENA_PROC_NUMBER=8
[2025-07-28 05:10:04] Set ATHENA_CORE_NUMBER=8
[2025-07-28 05:10:04] Starting ATLAS job with PandaID=6744952491
[2025-07-28 05:10:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 07:18:26]  *** The last 200 lines of the pilot log: ***
[2025-07-28 07:18:26] 2025-07-28 11:17:53,864 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 07:18:26] 2025-07-28 11:17:53,867 | INFO     | fitting pss+swap vs Time
[2025-07-28 07:18:26] 2025-07-28 11:17:53,868 | INFO     | sum of square deviations: 605592750.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,868 | INFO     | sum of deviations: 21774590988.000015
[2025-07-28 07:18:26] 2025-07-28 11:17:53,868 | INFO     | mean x: 1753697636.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,868 | INFO     | mean y: 2509108.648
[2025-07-28 07:18:26] 2025-07-28 11:17:53,869 | INFO     | -- intersect: -63053147915.84995
[2025-07-28 07:18:26] 2025-07-28 11:17:53,869 | INFO     | intersect: -63053147915.84995
[2025-07-28 07:18:26] 2025-07-28 11:17:53,869 | INFO     | chi2: 1.5596265969586318
[2025-07-28 07:18:26] 2025-07-28 11:17:53,869 | INFO     | sum of square deviations: 535786790.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,870 | INFO     | sum of deviations: 20760045149.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,870 | INFO     | mean x: 1753697483.5
[2025-07-28 07:18:26] 2025-07-28 11:17:53,870 | INFO     | mean y: 2506899.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,870 | INFO     | -- intersect: -67947729304.37426
[2025-07-28 07:18:26] 2025-07-28 11:17:53,870 | INFO     | intersect: -67947729304.37426
[2025-07-28 07:18:26] 2025-07-28 11:17:53,870 | INFO     | chi2: 1.5609553913115883
[2025-07-28 07:18:26] 2025-07-28 11:17:53,871 | INFO     | current chi2=1.5609553913115883 (change=-0.08519951862501898 %)
[2025-07-28 07:18:26] 2025-07-28 11:17:53,871 | INFO     | right removable region: 119
[2025-07-28 07:18:26] 2025-07-28 11:17:53,871 | INFO     | sum of square deviations: 535786790.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | sum of deviations: 1580869595.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | mean x: 1753697788.5
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | mean y: 2552490.566666667
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | -- intersect: -5171833224.80043
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | intersect: -5171833224.80043
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | chi2: 0.059780124304315556
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | current chi2=0.059780124304315556 (change=96.16702328487534 %)
[2025-07-28 07:18:26] 2025-07-28 11:17:53,872 | INFO     | sum of square deviations: 471562330.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,873 | INFO     | sum of deviations: -1988376374.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,873 | INFO     | mean x: 1753697941.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,873 | INFO     | mean y: 2560808.0434782607
[2025-07-28 07:18:26] 2025-07-28 11:17:53,873 | INFO     | -- intersect: 7397153910.967637
[2025-07-28 07:18:26] 2025-07-28 11:17:53,873 | INFO     | intersect: 7397153910.967637
[2025-07-28 07:18:26] 2025-07-28 11:17:53,874 | INFO     | chi2: 0.005392855312003457
[2025-07-28 07:18:26] 2025-07-28 11:17:53,874 | INFO     | current chi2=0.005392855312003457 (change=90.97884894894047 %)
[2025-07-28 07:18:26] 2025-07-28 11:17:53,874 | INFO     | sum of square deviations: 412686807.5
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | sum of deviations: -2298658181.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | mean x: 1753698093.5
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | mean y: 2561605.6
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | -- intersect: 9770628809.02733
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | intersect: 9770628809.02733
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | chi2: 0.004450800099156107
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | current chi2=0.004450800099156107 (change=17.468579413775785 %)
[2025-07-28 07:18:26] 2025-07-28 11:17:53,875 | INFO     | left removable region: 30
[2025-07-28 07:18:26] 2025-07-28 11:17:53,876 | INFO     | sum of square deviations: 218571540.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,876 | INFO     | sum of deviations: -1737280671.0000002
[2025-07-28 07:18:26] 2025-07-28 11:17:53,876 | INFO     | mean x: 1753698368.0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,876 | INFO     | mean y: 2559574.550561798
[2025-07-28 07:18:26] 2025-07-28 11:17:53,876 | INFO     | -- intersect: 13941548509.206215
[2025-07-28 07:18:26] 2025-07-28 11:17:53,876 | INFO     | intersect: 13941548509.206215
[2025-07-28 07:18:26] 2025-07-28 11:17:53,876 | INFO     | chi2: 0.0036170917584141425
[2025-07-28 07:18:26] 2025-07-28 11:17:53,877 | INFO     | -- intersect: 13941548509.206215
[2025-07-28 07:18:26] 2025-07-28 11:17:53,877 | INFO     | current memory leak: -7.95 B/s (using 89 data points, chi2=0.00)
[2025-07-28 07:18:26] 2025-07-28 11:17:53,877 | INFO     | could have reported an average CPU frequency of 2512 MHz (8 samples)
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | ..............................
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . Timing measurements:
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . get job = 0 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . initial setup = 1 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . payload setup = 10 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . stage-in = 0 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . payload execution = 7612 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . stage-out = 1 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | . log creation = 0 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,878 | INFO     | ..............................
[2025-07-28 07:18:26] 2025-07-28 11:17:53,996 | INFO     | 
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | job summary report
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | --------------------------------------------------
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | PanDA job id: 6744952491
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | task id: 45743349
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | errors: (none)
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | pilot state: finished 
[2025-07-28 07:18:26] 2025-07-28 11:17:53,997 | INFO     | transexitcode: 0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | exeerrorcode: 0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | exeerrordiag: 
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | exitcode: 0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | exitmsg: OK
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | cpuconsumptiontime: 56600 s
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | nevents: 400
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | neventsw: 0
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | pid: 785271
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | pgrp: 785271
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | corecount: 8
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | event service: False
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | sizes: {0: 2397245, 1: 2397500, 7: 2397762, 12: 2397790, 7627: 2425147, 7629: 2434145, 7631: 2434329, 7638: 2434523}
[2025-07-28 07:18:26] 2025-07-28 11:17:53,998 | INFO     | --------------------------------------------------
[2025-07-28 07:18:26] 2025-07-28 11:17:53,999 | INFO     | 
[2025-07-28 07:18:26] 2025-07-28 11:17:53,999 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 07:18:26] 2025-07-28 11:17:54,026 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | job 6744952491 has completed (purged errors)
[2025-07-28 07:18:26] 2025-07-28 11:17:54,028 | INFO     | overall cleanup function is called
[2025-07-28 07:18:26] 2025-07-28 11:17:55,038 | INFO     | --- collectZombieJob: --- 10, [785271]
[2025-07-28 07:18:26] 2025-07-28 11:17:55,039 | INFO     | zombie collector waiting for pid 785271
[2025-07-28 07:18:26] 2025-07-28 11:17:55,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 07:18:26] 2025-07-28 11:17:55,039 | INFO     | collected zombie processes
[2025-07-28 07:18:26] 2025-07-28 11:17:55,039 | INFO     | will attempt to kill all subprocesses of pid=785271
[2025-07-28 07:18:26] 2025-07-28 11:17:55,425 | INFO     | process IDs to be killed: [785271] (in reverse order)
[2025-07-28 07:18:26] 2025-07-28 11:17:55,534 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 07:18:26] 2025-07-28 11:17:55,534 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 07:18:26] 2025-07-28 11:17:55,549 | INFO     | did not find any defunct processes belonging to 785271
[2025-07-28 07:18:26] 2025-07-28 11:17:55,564 | INFO     | did not find any defunct processes belonging to 785271
[2025-07-28 07:18:26] 2025-07-28 11:17:55,564 | INFO     | ready for new job
[2025-07-28 07:18:26] 2025-07-28 11:17:55,564 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 07:18:26] 2025-07-28 11:17:55,567 | INFO     | ***************************************
[2025-07-28 07:18:26] 2025-07-28 11:17:55,567 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 07:18:26] 2025-07-28 11:17:55,567 | INFO     | ***************************************
[2025-07-28 07:18:26] 2025-07-28 11:17:55,567 | INFO     | 
[2025-07-28 07:18:26] 2025-07-28 11:17:55,573 | INFO     | architecture information:
[2025-07-28 07:18:26] 2025-07-28 11:17:55,574 | INFO     | executing command: cat /etc/os-release
[2025-07-28 07:18:26] 2025-07-28 11:17:55,596 | INFO     | cat /etc/os-release:
[2025-07-28 07:18:26] NAME="CentOS Linux"
[2025-07-28 07:18:26] VERSION="7 (Core)"
[2025-07-28 07:18:26] ID="centos"
[2025-07-28 07:18:26] ID_LIKE="rhel fedora"
[2025-07-28 07:18:26] VERSION_ID="7"
[2025-07-28 07:18:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 07:18:26] ANSI_COLOR="0;31"
[2025-07-28 07:18:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 07:18:26] HOME_URL="https://www.centos.org/"
[2025-07-28 07:18:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 07:18:26] 
[2025-07-28 07:18:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 07:18:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 07:18:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 07:18:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 07:18:26] 
[2025-07-28 07:18:26] 2025-07-28 11:17:55,597 | INFO     | ***************************************
[2025-07-28 07:18:26] 2025-07-28 11:17:56,099 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 07:18:26] 2025-07-28 11:17:56,125 | INFO     | sufficient remaining disk space (129624965120 B)
[2025-07-28 07:18:26] 2025-07-28 11:17:56,125 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 07:18:26] 2025-07-28 11:17:56,126 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 07:18:26] 2025-07-28 11:17:56,126 | INFO     | update_server=False
[2025-07-28 07:18:26] 2025-07-28 11:17:56,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 07:18:26] 2025-07-28 11:17:56,126 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 07:18:26] 2025-07-28 11:17:56,575 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 07:18:26] 2025-07-28 11:17:56,575 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 07:18:26] 2025-07-28 11:17:56,575 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:18:26] 2025-07-28 11:17:56,576 | INFO     | will abort loop
[2025-07-28 07:18:26] 2025-07-28 11:17:56,968 | INFO     | all data control threads have been joined
[2025-07-28 07:18:26] 2025-07-28 11:17:57,131 | INFO     | [job] retrieve thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:57,506 | INFO     | [payload] validate_post thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:57,576 | INFO     | all payload control threads have been joined
[2025-07-28 07:18:26] 2025-07-28 11:17:57,580 | INFO     | [job] job monitor thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:57,631 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 07:18:26] 2025-07-28 11:17:57,634 | INFO     | [job] validate thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:57,677 | INFO     | all job control threads have been joined
[2025-07-28 07:18:26] 2025-07-28 11:17:57,942 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:57,973 | INFO     | [data] control thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:58,006 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:58,132 | INFO     | [data] copytool_out thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:58,201 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:58,318 | INFO     | [payload] failed_post thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:58,412 | INFO     | [data] copytool_in thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:58,581 | INFO     | [payload] control thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:58,683 | INFO     | [job] control thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:17:59,007 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:18:26] 2025-07-28 11:18:00,013 | INFO     | [job] queue monitor thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:18:01,637 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:18:06,414 | INFO     | job.realtimelogging is not enabled
[2025-07-28 07:18:26] 2025-07-28 11:18:07,417 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 07:18:26] 2025-07-28 11:18:08,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139851791583040)>', '<ExcThread(monitor, started 139851164800768)>']
[2025-07-28 07:18:26] 2025-07-28 11:18:13,848 | INFO     | all workflow threads have been joined
[2025-07-28 07:18:26] 2025-07-28 11:18:13,850 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 07:18:26] 2025-07-28 11:18:13,850 | INFO     | traces error code: 0
[2025-07-28 07:18:26] 2025-07-28 11:18:13,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 07:18:26] 2025-07-28 11:18:26,380 | INFO     | PID=772486 has CPU usage=7.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 07:18:26] 2025-07-28 11:18:26,381 | INFO     | .. there are 13 such processes running
[2025-07-28 07:18:26] 2025-07-28 11:18:26,382 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 07:18:26] 2025-07-28 11:18:26,383 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 07:18:26] 2025-07-28 11:18:26,383 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 07:18:26] 2025-07-28 11:18:26,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 07:18:26] 2025-07-28 11:18:26,383 | INFO     | [monitor] control thread has ended
[2025-07-28 07:18:26] 2025-07-28 11:18:26,755 [wrapper] ==== pilot stdout END ====
[2025-07-28 07:18:26] 2025-07-28 11:18:26,759 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 07:18:26] 2025-07-28 11:18:26,763 [wrapper] pilotpid: 772486
[2025-07-28 07:18:26] 2025-07-28 11:18:26,768 [wrapper] Pilot exit status: 0
[2025-07-28 07:18:26] 2025-07-28 11:18:26,782 [wrapper] pandaids: 6744952491 6744952491
[2025-07-28 07:18:26] 2025-07-28 11:18:26,868 [wrapper] cleanup supervisor_pilot  978487 772487
[2025-07-28 07:18:26] 2025-07-28 11:18:26,873 [wrapper] Test setup, not cleaning
[2025-07-28 07:18:26] 2025-07-28 11:18:26,877 [wrapper] apfmon messages muted
[2025-07-28 07:18:26] 2025-07-28 11:18:26,882 [wrapper] ==== wrapper stdout END ====
[2025-07-28 07:18:26] 2025-07-28 11:18:26,886 [wrapper] ==== wrapper stderr END ====
[2025-07-28 07:18:26]  *** Error codes and diagnostics ***
[2025-07-28 07:18:26]     "exeErrorCode": 0,
[2025-07-28 07:18:26]     "exeErrorDiag": "",
[2025-07-28 07:18:26]     "pilotErrorCode": 0,
[2025-07-28 07:18:26]     "pilotErrorDiag": "",
[2025-07-28 07:18:26]  *** Listing of results directory ***
[2025-07-28 07:18:26] total 507128
[2025-07-28 07:18:26] drwx------. 4 boincer umatlas      4096 Jun 17 06:04 pilot3
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas    530466 Jul 25 00:28 pilot3.tar.gz
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas      5112 Jul 25 00:56 queuedata.json
[2025-07-28 07:18:26] -rwx------. 1 boincer umatlas     36292 Jul 25 00:58 runpilot2-wrapper.sh
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas       100 Jul 28 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 07:18:26] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 04:55 run_atlas
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas       105 Jul 28 04:55 job.xml
[2025-07-28 07:18:26] -rw-r--r--. 3 boincer umatlas 149181390 Jul 28 04:55 EVNT.45743347._000913.pool.root.1
[2025-07-28 07:18:26] -rw-r--r--. 3 boincer umatlas 149181390 Jul 28 04:55 ATLAS.root_0
[2025-07-28 07:18:26] -rw-r--r--. 2 boincer umatlas    542886 Jul 28 04:55 input.tar.gz
[2025-07-28 07:18:26] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 04:55 start_atlas.sh
[2025-07-28 07:18:26] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 04:55 shared
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas         0 Jul 28 04:55 boinc_lockfile
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas   1593052 Jul 28 04:55 agis_ddmendpoints.agis.ALL.json
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas      2561 Jul 28 05:10 pandaJob.out
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas    978452 Jul 28 05:10 agis_schedconf.cvmfs.json
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas      6856 Jul 28 07:09 init_data.xml
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas 214946690 Jul 28 07:17 HITS.45743349._016292.pool.root.1
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas       530 Jul 28 07:17 boinc_task_state.xml
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas      1044 Jul 28 07:17 memory_monitor_summary.json
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas    335049 Jul 28 07:17 log.45743349._016292.job.log.tgz.1
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas      7829 Jul 28 07:17 heartbeat.json
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 07:18 boinc_mmap_file
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas        27 Jul 28 07:18 wrapper_checkpoint.txt
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas        96 Jul 28 07:18 pilot_heartbeat.json
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas       822 Jul 28 07:18 pilotlog.txt
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas    721963 Jul 28 07:18 log.45743349._016292.job.log.1
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas       357 Jul 28 07:18 output.list
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas       620 Jul 28 07:18 runtime_log
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas   1075200 Jul 28 07:18 result.tar.gz
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas      8755 Jul 28 07:18 runtime_log.err
[2025-07-28 07:18:26] -rw-------. 1 boincer umatlas       779 Jul 28 07:18 42LMDmYgPz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm5iOLDmPwvidm.diag
[2025-07-28 07:18:26] -rw-r--r--. 1 boincer umatlas     23059 Jul 28 07:18 stderr.txt
[2025-07-28 07:18:27] HITS file was successfully produced:
[2025-07-28 07:18:27] -rw-------. 1 boincer umatlas 214946690 Jul 28 07:17 shared/HITS.pool.root.1
[2025-07-28 07:18:27]  *** Contents of shared directory: ***
[2025-07-28 07:18:27] total 357204
[2025-07-28 07:18:27] -rw-r--r--. 3 boincer umatlas 149181390 Jul 28 04:55 ATLAS.root_0
[2025-07-28 07:18:27] -rw-r--r--. 2 boincer umatlas    542886 Jul 28 04:55 input.tar.gz
[2025-07-28 07:18:27] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 04:55 start_atlas.sh
[2025-07-28 07:18:27] -rw-------. 1 boincer umatlas 214946690 Jul 28 07:17 HITS.pool.root.1
[2025-07-28 07:18:27] -rw-------. 1 boincer umatlas   1075200 Jul 28 07:18 result.tar.gz
07:18:48 (762455): run_atlas exited; CPU time 56825.738040
07:18:48 (762455): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN