Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:49:26 (11556): wrapper (7.7.26015): starting
04:49:26 (11556): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 04:49:26] Arguments: --nthreads 8
[2025-07-28 04:49:26] Threads: 8
[2025-07-28 04:49:26] Checking for CVMFS
[2025-07-28 04:49:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 04:49:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 04:49:27] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 04:49:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 04:49:27] 2.11.2.0 2839 113223 76144 148841 3 1 11674492 20275201 1 130560 0 30001665 99.961 10081830 10430 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 04:49:27] CVMFS is ok
[2025-07-28 04:49:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 04:49:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 04:49:27] Further information can be found at the LHC@home message board.
[2025-07-28 04:49:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 04:49:27] Checking for apptainer binary...
[2025-07-28 04:49:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 04:49:27] Running /usr/bin/apptainer --version
[2025-07-28 04:49:27] apptainer version 1.3.2-1.el7
[2025-07-28 04:49:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 04:49:29] c-204-19.aglt2.org
[2025-07-28 04:49:29] apptainer works
[2025-07-28 04:49:29] Set ATHENA_PROC_NUMBER=8
[2025-07-28 04:49:29] Set ATHENA_CORE_NUMBER=8
[2025-07-28 04:49:29] Starting ATLAS job with PandaID=6744925551
[2025-07-28 04:49:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 07:19:15]  *** The last 200 lines of the pilot log: ***
[2025-07-28 07:19:15] 2025-07-28 11:18:42,456 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 07:19:15] 2025-07-28 11:18:42,462 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1778.875
[2025-07-28 07:19:15] 2025-07-28 11:18:42,465 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744925551/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,466 | INFO     | extracted standard info from prmon json
[2025-07-28 07:19:15] 2025-07-28 11:18:42,467 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 07:19:15] 2025-07-28 11:18:42,467 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 07:19:15] 2025-07-28 11:18:42,468 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 07:19:15] 2025-07-28 11:18:42,468 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 07:19:15] 2025-07-28 11:18:42,472 | INFO     | fitting pss+swap vs Time
[2025-07-28 07:19:15] 2025-07-28 11:18:42,473 | INFO     | sum of square deviations: 964976904.4931524
[2025-07-28 07:19:15] 2025-07-28 11:18:42,474 | INFO     | sum of deviations: 5724116915.917807
[2025-07-28 07:19:15] 2025-07-28 11:18:42,474 | INFO     | mean x: 1753697042.5068493
[2025-07-28 07:19:15] 2025-07-28 11:18:42,474 | INFO     | mean y: 2502669.5821917807
[2025-07-28 07:19:15] 2025-07-28 11:18:42,474 | INFO     | -- intersect: -10400199052.777754
[2025-07-28 07:19:15] 2025-07-28 11:18:42,474 | INFO     | intersect: -10400199052.777754
[2025-07-28 07:19:15] 2025-07-28 11:18:42,475 | INFO     | chi2: 1.566815932408993
[2025-07-28 07:19:15] 2025-07-28 11:18:42,475 | INFO     | sum of square deviations: 869189366.9929086
[2025-07-28 07:19:15] 2025-07-28 11:18:42,476 | INFO     | sum of deviations: 5625771805.432621
[2025-07-28 07:19:15] 2025-07-28 11:18:42,476 | INFO     | mean x: 1753696890.0070922
[2025-07-28 07:19:15] 2025-07-28 11:18:42,476 | INFO     | mean y: 2502512.5673758867
[2025-07-28 07:19:15] 2025-07-28 11:18:42,477 | INFO     | -- intersect: -11348186869.666248
[2025-07-28 07:19:15] 2025-07-28 11:18:42,477 | INFO     | intersect: -11348186869.666248
[2025-07-28 07:19:15] 2025-07-28 11:18:42,477 | INFO     | chi2: 1.5682581839505116
[2025-07-28 07:19:15] 2025-07-28 11:18:42,477 | INFO     | current chi2=1.5682581839505116 (change=-0.09204983889212785 %)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,478 | INFO     | right removable region: 140
[2025-07-28 07:19:15] 2025-07-28 11:18:42,478 | INFO     | sum of square deviations: 869188756.9929086
[2025-07-28 07:19:15] 2025-07-28 11:18:42,479 | INFO     | sum of deviations: -15849692537.184397
[2025-07-28 07:19:15] 2025-07-28 11:18:42,479 | INFO     | mean x: 1753697195.0070922
[2025-07-28 07:19:15] 2025-07-28 11:18:42,479 | INFO     | mean y: 2536459.1843971633
[2025-07-28 07:19:15] 2025-07-28 11:18:42,479 | INFO     | -- intersect: 31981276543.61452
[2025-07-28 07:19:15] 2025-07-28 11:18:42,480 | INFO     | intersect: 31981276543.61452
[2025-07-28 07:19:15] 2025-07-28 11:18:42,480 | INFO     | chi2: 0.11317153366759569
[2025-07-28 07:19:15] 2025-07-28 11:18:42,480 | INFO     | current chi2=0.11317153366759569 (change=92.77697326618363 %)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,481 | INFO     | sum of square deviations: 779958871.9926479
[2025-07-28 07:19:15] 2025-07-28 11:18:42,481 | INFO     | sum of deviations: -12375606849.904413
[2025-07-28 07:19:15] 2025-07-28 11:18:42,481 | INFO     | mean x: 1753697347.5073528
[2025-07-28 07:19:15] 2025-07-28 11:18:42,482 | INFO     | mean y: 2530488.404411765
[2025-07-28 07:19:15] 2025-07-28 11:18:42,482 | INFO     | -- intersect: 27828445015.184452
[2025-07-28 07:19:15] 2025-07-28 11:18:42,482 | INFO     | intersect: 27828445015.184452
[2025-07-28 07:19:15] 2025-07-28 11:18:42,482 | INFO     | chi2: 0.1054548202059526
[2025-07-28 07:19:15] 2025-07-28 11:18:42,482 | INFO     | current chi2=0.1054548202059526 (change=6.818599352296845 %)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,483 | INFO     | left removable region: 20
[2025-07-28 07:19:15] 2025-07-28 11:18:42,483 | INFO     | sum of square deviations: 535786607.9916659
[2025-07-28 07:19:15] 2025-07-28 11:18:42,484 | INFO     | sum of deviations: -2092706466.841667
[2025-07-28 07:19:15] 2025-07-28 11:18:42,484 | INFO     | mean x: 1753697469.5083334
[2025-07-28 07:19:15] 2025-07-28 11:18:42,484 | INFO     | mean y: 2511125.341666667
[2025-07-28 07:19:15] 2025-07-28 11:18:42,484 | INFO     | -- intersect: 6852204605.14033
[2025-07-28 07:19:15] 2025-07-28 11:18:42,484 | INFO     | intersect: 6852204605.14033
[2025-07-28 07:19:15] 2025-07-28 11:18:42,485 | INFO     | chi2: 0.03656435517207849
[2025-07-28 07:19:15] 2025-07-28 11:18:42,485 | INFO     | -- intersect: 6852204605.14033
[2025-07-28 07:19:15] 2025-07-28 11:18:42,485 | INFO     | current memory leak: -3.91 B/s (using 120 data points, chi2=0.04)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,486 | INFO     | could have reported an average CPU frequency of 2005 MHz (8 samples)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,486 | INFO     | ..............................
[2025-07-28 07:19:15] 2025-07-28 11:18:42,486 | INFO     | . Timing measurements:
[2025-07-28 07:19:15] 2025-07-28 11:18:42,486 | INFO     | . get job = 0 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,486 | INFO     | . initial setup = 2 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,487 | INFO     | . payload setup = 11 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,487 | INFO     | . stage-in = 0 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,487 | INFO     | . payload execution = 8894 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,487 | INFO     | . stage-out = 0 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,487 | INFO     | . log creation = 0 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,488 | INFO     | ..............................
[2025-07-28 07:19:15] 2025-07-28 11:18:42,590 | INFO     | 
[2025-07-28 07:19:15] 2025-07-28 11:18:42,590 | INFO     | job summary report
[2025-07-28 07:19:15] 2025-07-28 11:18:42,590 | INFO     | --------------------------------------------------
[2025-07-28 07:19:15] 2025-07-28 11:18:42,590 | INFO     | PanDA job id: 6744925551
[2025-07-28 07:19:15] 2025-07-28 11:18:42,591 | INFO     | task id: 45743349
[2025-07-28 07:19:15] 2025-07-28 11:18:42,591 | INFO     | errors: (none)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,591 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 07:19:15] 2025-07-28 11:18:42,591 | INFO     | pilot state: finished 
[2025-07-28 07:19:15] 2025-07-28 11:18:42,591 | INFO     | transexitcode: 0
[2025-07-28 07:19:15] 2025-07-28 11:18:42,592 | INFO     | exeerrorcode: 0
[2025-07-28 07:19:15] 2025-07-28 11:18:42,592 | INFO     | exeerrordiag: 
[2025-07-28 07:19:15] 2025-07-28 11:18:42,592 | INFO     | exitcode: 0
[2025-07-28 07:19:15] 2025-07-28 11:18:42,592 | INFO     | exitmsg: OK
[2025-07-28 07:19:15] 2025-07-28 11:18:42,592 | INFO     | cpuconsumptiontime: 64803 s
[2025-07-28 07:19:15] 2025-07-28 11:18:42,592 | INFO     | nevents: 400
[2025-07-28 07:19:15] 2025-07-28 11:18:42,592 | INFO     | neventsw: 0
[2025-07-28 07:19:15] 2025-07-28 11:18:42,593 | INFO     | pid: 22610
[2025-07-28 07:19:15] 2025-07-28 11:18:42,593 | INFO     | pgrp: 22610
[2025-07-28 07:19:15] 2025-07-28 11:18:42,593 | INFO     | corecount: 8
[2025-07-28 07:19:15] 2025-07-28 11:18:42,593 | INFO     | event service: False
[2025-07-28 07:19:15] 2025-07-28 11:18:42,593 | INFO     | sizes: {0: 2397469, 6: 2397731, 11: 2397759, 8909: 2425939, 8910: 2434937, 8911: 2434993, 8920: 2435315}
[2025-07-28 07:19:15] 2025-07-28 11:18:42,594 | INFO     | --------------------------------------------------
[2025-07-28 07:19:15] 2025-07-28 11:18:42,594 | INFO     | 
[2025-07-28 07:19:15] 2025-07-28 11:18:42,594 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 07:19:15] 2025-07-28 11:18:42,622 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,622 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,622 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,623 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,625 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,625 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,625 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,626 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,626 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,626 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 07:19:15] 2025-07-28 11:18:42,626 | INFO     | job 6744925551 has completed (purged errors)
[2025-07-28 07:19:15] 2025-07-28 11:18:42,627 | INFO     | overall cleanup function is called
[2025-07-28 07:19:15] 2025-07-28 11:18:42,637 | INFO     | PID=15235 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 07:19:15] 2025-07-28 11:18:43,635 | INFO     | --- collectZombieJob: --- 10, [22610]
[2025-07-28 07:19:15] 2025-07-28 11:18:43,635 | INFO     | zombie collector waiting for pid 22610
[2025-07-28 07:19:15] 2025-07-28 11:18:43,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 07:19:15] 2025-07-28 11:18:43,636 | INFO     | collected zombie processes
[2025-07-28 07:19:15] 2025-07-28 11:18:43,636 | INFO     | will attempt to kill all subprocesses of pid=22610
[2025-07-28 07:19:15] 2025-07-28 11:18:43,729 | INFO     | process IDs to be killed: [22610] (in reverse order)
[2025-07-28 07:19:15] 2025-07-28 11:18:43,789 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 07:19:15] 2025-07-28 11:18:43,790 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 07:19:15] 2025-07-28 11:18:43,794 | INFO     | did not find any defunct processes belonging to 22610
[2025-07-28 07:19:15] 2025-07-28 11:18:43,798 | INFO     | did not find any defunct processes belonging to 22610
[2025-07-28 07:19:15] 2025-07-28 11:18:43,798 | INFO     | ready for new job
[2025-07-28 07:19:15] 2025-07-28 11:18:43,798 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 07:19:15] 2025-07-28 11:18:43,801 | INFO     | ***************************************
[2025-07-28 07:19:15] 2025-07-28 11:18:43,801 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 07:19:15] 2025-07-28 11:18:43,801 | INFO     | ***************************************
[2025-07-28 07:19:15] 2025-07-28 11:18:43,801 | INFO     | 
[2025-07-28 07:19:15] 2025-07-28 11:18:43,802 | INFO     | architecture information:
[2025-07-28 07:19:15] 2025-07-28 11:18:43,802 | INFO     | executing command: cat /etc/os-release
[2025-07-28 07:19:15] 2025-07-28 11:18:43,821 | INFO     | cat /etc/os-release:
[2025-07-28 07:19:15] NAME="CentOS Linux"
[2025-07-28 07:19:15] VERSION="7 (Core)"
[2025-07-28 07:19:15] ID="centos"
[2025-07-28 07:19:15] ID_LIKE="rhel fedora"
[2025-07-28 07:19:15] VERSION_ID="7"
[2025-07-28 07:19:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 07:19:15] ANSI_COLOR="0;31"
[2025-07-28 07:19:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 07:19:15] HOME_URL="https://www.centos.org/"
[2025-07-28 07:19:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 07:19:15] 
[2025-07-28 07:19:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 07:19:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 07:19:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 07:19:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 07:19:15] 
[2025-07-28 07:19:15] 2025-07-28 11:18:43,821 | INFO     | ***************************************
[2025-07-28 07:19:15] 2025-07-28 11:18:44,324 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 07:19:15] 2025-07-28 11:18:44,345 | INFO     | sufficient remaining disk space (18533580800 B)
[2025-07-28 07:19:15] 2025-07-28 11:18:44,346 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 07:19:15] 2025-07-28 11:18:44,346 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 07:19:15] 2025-07-28 11:18:44,346 | INFO     | update_server=False
[2025-07-28 07:19:15] 2025-07-28 11:18:44,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 07:19:15] 2025-07-28 11:18:44,347 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 07:19:15] 2025-07-28 11:18:44,347 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 07:19:15] 2025-07-28 11:18:44,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:19:15] 2025-07-28 11:18:44,544 | INFO     | all data control threads have been joined
[2025-07-28 07:19:15] 2025-07-28 11:18:44,665 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 07:19:15] 2025-07-28 11:18:44,665 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 07:19:15] 2025-07-28 11:18:44,666 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 07:19:15] 2025-07-28 11:18:44,666 | INFO     | will abort loop
[2025-07-28 07:19:15] 2025-07-28 11:18:44,868 | INFO     | all payload control threads have been joined
[2025-07-28 07:19:15] 2025-07-28 11:18:45,348 | INFO     | [job] retrieve thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:45,350 | INFO     | [job] queue monitor thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:45,381 | INFO     | all job control threads have been joined
[2025-07-28 07:19:15] 2025-07-28 11:18:45,457 | INFO     | [payload] failed_post thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:45,550 | INFO     | [data] control thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:45,671 | INFO     | [job] job monitor thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:45,873 | INFO     | [payload] control thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:45,900 | INFO     | [payload] validate_post thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:46,353 | INFO     | [data] copytool_out thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:46,385 | INFO     | [job] control thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:46,526 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:46,600 | INFO     | [data] copytool_in thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:46,784 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:46,802 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:46,810 | INFO     | [job] validate thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:48,349 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:54,810 | INFO     | job.realtimelogging is not enabled
[2025-07-28 07:19:15] 2025-07-28 11:18:55,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 07:19:15] 2025-07-28 11:18:56,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312984905536)>', '<ExcThread(monitor, started 140312395630336)>']
[2025-07-28 07:19:15] 2025-07-28 11:19:01,405 | INFO     | all workflow threads have been joined
[2025-07-28 07:19:15] 2025-07-28 11:19:01,405 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 07:19:15] 2025-07-28 11:19:01,406 | INFO     | traces error code: 0
[2025-07-28 07:19:15] 2025-07-28 11:19:01,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 07:19:15] 2025-07-28 11:19:14,827 | INFO     | PID=15235 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 07:19:15] 2025-07-28 11:19:14,828 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 07:19:15] 2025-07-28 11:19:14,829 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 07:19:15] 2025-07-28 11:19:14,829 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 07:19:15] 2025-07-28 11:19:14,829 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 07:19:15] 2025-07-28 11:19:14,829 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 07:19:15] 2025-07-28 11:19:14,829 | INFO     | [monitor] control thread has ended
[2025-07-28 07:19:15] 2025-07-28 11:19:14,932 [wrapper] ==== pilot stdout END ====
[2025-07-28 07:19:15] 2025-07-28 11:19:14,937 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 07:19:15] 2025-07-28 11:19:14,941 [wrapper] pilotpid: 15235
[2025-07-28 07:19:15] 2025-07-28 11:19:14,946 [wrapper] Pilot exit status: 0
[2025-07-28 07:19:15] 2025-07-28 11:19:14,965 [wrapper] pandaids: 6744925551
[2025-07-28 07:19:15] 2025-07-28 11:19:15,010 [wrapper] cleanup supervisor_pilot 13165 15236
[2025-07-28 07:19:15] 2025-07-28 11:19:15,015 [wrapper] Test setup, not cleaning
[2025-07-28 07:19:15] 2025-07-28 11:19:15,020 [wrapper] apfmon messages muted
[2025-07-28 07:19:15] 2025-07-28 11:19:15,025 [wrapper] ==== wrapper stdout END ====
[2025-07-28 07:19:15] 2025-07-28 11:19:15,030 [wrapper] ==== wrapper stderr END ====
[2025-07-28 07:19:15]  *** Error codes and diagnostics ***
[2025-07-28 07:19:15]     "exeErrorCode": 0,
[2025-07-28 07:19:15]     "exeErrorDiag": "",
[2025-07-28 07:19:15]     "pilotErrorCode": 0,
[2025-07-28 07:19:15]     "pilotErrorDiag": "",
[2025-07-28 07:19:15]  *** Listing of results directory ***
[2025-07-28 07:19:15] total 438212
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas    530466 Jul 24 15:13 pilot3.tar.gz
[2025-07-28 07:19:15] -rwx------ 1 boincer umatlas     36292 Jul 24 15:19 runpilot2-wrapper.sh
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas      5112 Jul 24 15:19 queuedata.json
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas       100 Jul 28 04:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 07:19:15] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 04:49 run_atlas
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas       105 Jul 28 04:49 job.xml
[2025-07-28 07:19:15] -rw-r--r-- 2 boincer umatlas 233135476 Jul 28 04:49 EVNT.45743347._000390.pool.root.1
[2025-07-28 07:19:15] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 04:49 start_atlas.sh
[2025-07-28 07:19:15] drwxrwx--x 2 boincer umatlas      4096 Jul 28 04:49 shared
[2025-07-28 07:19:15] -rw-r--r-- 2 boincer umatlas    542878 Jul 28 04:49 input.tar.gz
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas         0 Jul 28 04:49 boinc_lockfile
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas      2560 Jul 28 04:49 pandaJob.out
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas    978452 Jul 28 04:49 agis_schedconf.cvmfs.json
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas   1593052 Jul 28 04:49 agis_ddmendpoints.agis.ALL.json
[2025-07-28 07:19:15] drwx------ 4 boincer umatlas      4096 Jul 28 04:49 pilot3
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas      5904 Jul 28 07:13 init_data.xml
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas 209430952 Jul 28 07:17 HITS.45743349._007377.pool.root.1
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas       529 Jul 28 07:18 boinc_task_state.xml
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas      1080 Jul 28 07:18 memory_monitor_summary.json
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas    338894 Jul 28 07:18 log.45743349._007377.job.log.tgz.1
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas      7848 Jul 28 07:18 heartbeat.json
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas        27 Jul 28 07:18 wrapper_checkpoint.txt
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 07:18 boinc_mmap_file
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas        95 Jul 28 07:19 pilot_heartbeat.json
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas       815 Jul 28 07:19 pilotlog.txt
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas    807424 Jul 28 07:19 log.45743349._007377.job.log.1
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas       357 Jul 28 07:19 output.list
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas       620 Jul 28 07:19 runtime_log
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas   1167360 Jul 28 07:19 result.tar.gz
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas       661 Jul 28 07:19 utRKDmQeGz7n9Rq4apOajLDm4fhM0noT9bVof3QYDmcaxKDmeHwfwm.diag
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas      8660 Jul 28 07:19 runtime_log.err
[2025-07-28 07:19:15] -rw-r--r-- 1 boincer umatlas     21213 Jul 28 07:19 stderr.txt
[2025-07-28 07:19:15] HITS file was successfully produced:
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas 209430952 Jul 28 07:17 shared/HITS.pool.root.1
[2025-07-28 07:19:15]  *** Contents of shared directory: ***
[2025-07-28 07:19:15] total 433888
[2025-07-28 07:19:15] -rw-r--r-- 2 boincer umatlas 233135476 Jul 28 04:49 ATLAS.root_0
[2025-07-28 07:19:15] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 04:49 start_atlas.sh
[2025-07-28 07:19:15] -rw-r--r-- 2 boincer umatlas    542878 Jul 28 04:49 input.tar.gz
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas 209430952 Jul 28 07:17 HITS.pool.root.1
[2025-07-28 07:19:15] -rw------- 1 boincer umatlas   1167360 Jul 28 07:19 result.tar.gz
07:19:17 (11556): run_atlas exited; CPU time 64710.007118
07:19:17 (11556): called boinc_finish(0)

</stderr_txt>
]]>

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