Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:58:43 (1880404): wrapper (7.7.26015): starting
03:58:43 (1880404): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 03:58:43] Arguments: --nthreads 8
[2025-07-28 03:58:43] Threads: 8
[2025-07-28 03:58:43] Checking for CVMFS
[2025-07-28 03:58:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 03:58:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 03:58:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 03:58:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 03:58:43] 2.12.6.0 2720467 19533 245896 148840 0 751 34685480 40960001 21177 16776704 0 190793795 99.735 161002954 27951 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 03:58:43] CVMFS is ok
[2025-07-28 03:58:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 03:58:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 03:58:43] Further information can be found at the LHC@home message board.
[2025-07-28 03:58:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 03:58:43] Checking for apptainer binary...
[2025-07-28 03:58:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 03:58:43] Running /usr/bin/apptainer --version
[2025-07-28 03:58:43] apptainer version 1.4.1-1.el9
[2025-07-28 03:58:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 03:58:44] c8-16-1.aglt2.org
[2025-07-28 03:58:44] apptainer works
[2025-07-28 03:58:44] Set ATHENA_PROC_NUMBER=8
[2025-07-28 03:58:44] Set ATHENA_CORE_NUMBER=8
[2025-07-28 03:58:44] Starting ATLAS job with PandaID=6744934188
[2025-07-28 03:58:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:53:07]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:53:07]  lfn=log.45743349._010763.job.log.tgz.1
[2025-07-28 04:53:07]  mtime=0
[2025-07-28 04:53:07]  protocol_id=None
[2025-07-28 04:53:07]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 04:53:07]  replicas=None
[2025-07-28 04:53:07]  scope=mc23_13p6TeV
[2025-07-28 04:53:07]  status=None
[2025-07-28 04:53:07]  status_code=0
[2025-07-28 04:53:07]  storage_token=
[2025-07-28 04:53:07]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6744934188/log.45743349._010763.job.log.tgz.1
[2025-07-28 04:53:07]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/33/log.45743349._010763.job.log.tgz.1
[2025-07-28 04:53:07]  workdir=None
[2025-07-28 04:53:07] ]
[2025-07-28 04:53:07] 2025-07-28 08:52:26,046 | INFO     | transferring file log.45743349._010763.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6744934188/log.45743349._010763.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 04:53:07] 2025-07-28 08:52:26,047 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6744934188/log.45743349._010763.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._010763.job
[2025-07-28 04:53:07] 2025-07-28 08:52:26,065 | INFO     | adding to output.list: log.45743349._010763.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/33/log.45743349._010763.job.log.tg
[2025-07-28 04:53:07] 2025-07-28 08:52:26,065 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 04:53:07] 2025-07-28 08:52:26,066 | INFO     | summary of transferred files:
[2025-07-28 04:53:07] 2025-07-28 08:52:26,066 | INFO     |  -- lfn=log.45743349._010763.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 04:53:07] 2025-07-28 08:52:26,066 | INFO     | stage-out finished correctly
[2025-07-28 04:53:07] 2025-07-28 08:52:26,725 | INFO     | monitor loop #238: job 0:6744934188 is in state 'finished'
[2025-07-28 04:53:07] 2025-07-28 08:52:26,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:53:07] 2025-07-28 08:52:27,089 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 04:53:07] 2025-07-28 08:52:29,045 | INFO     | job 6744934188 has state=finished
[2025-07-28 04:53:07] 2025-07-28 08:52:29,046 | INFO     | preparing for final server update for job 6744934188 in state='finished'
[2025-07-28 04:53:07] 2025-07-28 08:52:29,047 | INFO     | this job has now completed (state=finished)
[2025-07-28 04:53:07] 2025-07-28 08:52:29,047 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 04:53:07] 2025-07-28 08:52:29,047 | INFO     | log transfer has been attempted: DONE
[2025-07-28 04:53:07] 2025-07-28 08:52:29,047 | INFO     | job 6744934188 has finished - writing final server update
[2025-07-28 04:53:07] 2025-07-28 08:52:29,047 | INFO     | total number of processed events: 400 (read)
[2025-07-28 04:53:07] 2025-07-28 08:52:29,049 | INFO     | executing command: lscpu
[2025-07-28 04:53:07] 2025-07-28 08:52:29,115 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:53:07] 2025-07-28 08:52:29,228 | INFO     | monitor loop #239: job 0:6744934188 is in state 'finished'
[2025-07-28 04:53:07] 2025-07-28 08:52:29,228 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:53:07] 2025-07-28 08:52:31,731 | INFO     | monitor loop #240: job 0:6744934188 is in state 'finished'
[2025-07-28 04:53:07] 2025-07-28 08:52:31,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:53:07] 2025-07-28 08:52:33,030 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 04:53:07] 2025-07-28 08:52:33,035 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3675.370421874996
[2025-07-28 04:53:07] 2025-07-28 08:52:33,048 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6744934188/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:53:07] 2025-07-28 08:52:33,049 | INFO     | extracted standard info from prmon json
[2025-07-28 04:53:07] 2025-07-28 08:52:33,049 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:53:07] 2025-07-28 08:52:33,049 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:53:07] 2025-07-28 08:52:33,049 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:53:07] 2025-07-28 08:52:33,049 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:53:07] 2025-07-28 08:52:33,050 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:53:07] 2025-07-28 08:52:33,050 | INFO     | sum of square deviations: 30168007.5
[2025-07-28 04:53:07] 2025-07-28 08:52:33,050 | INFO     | sum of deviations: -4678012377.499999
[2025-07-28 04:53:07] 2025-07-28 08:52:33,050 | INFO     | mean x: 1753691240.5
[2025-07-28 04:53:07] 2025-07-28 08:52:33,050 | INFO     | mean y: 2573113.3695652173
[2025-07-28 04:53:07] 2025-07-28 08:52:33,050 | INFO     | -- intersect: 271939303750.0325
[2025-07-28 04:53:07] 2025-07-28 08:52:33,050 | INFO     | intersect: 271939303750.0325
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | chi2: 0.09660971414426124
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | -- intersect: 271939303750.0325
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | current memory leak: -155.07 B/s (using 46 data points, chi2=0.10)
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | could have reported an average CPU frequency of 3701 MHz (5 samples)
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | ..............................
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . Timing measurements:
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . get job = 0 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . initial setup = 3 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . payload setup = 7 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . stage-in = 0 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . payload execution = 3179 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . stage-out = 3 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | . log creation = 1 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,051 | INFO     | ..............................
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | 
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | job summary report
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | --------------------------------------------------
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | PanDA job id: 6744934188
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | task id: 45743349
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | errors: (none)
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | pilot state: finished 
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | transexitcode: 0
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | exeerrorcode: 0
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | exeerrordiag: 
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | exitcode: 0
[2025-07-28 04:53:07] 2025-07-28 08:52:33,105 | INFO     | exitmsg: OK
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | cpuconsumptiontime: 23310 s
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | nevents: 400
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | neventsw: 0
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | pid: 1897186
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | pgrp: 1897186
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | corecount: 8
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | event service: False
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | sizes: {0: 2397302, 1: 2397501, 5: 2397763, 11: 2397819, 3191: 2423341, 3195: 2432367, 3196: 2432551, 3202: 2432777}
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | --------------------------------------------------
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | 
[2025-07-28 04:53:07] 2025-07-28 08:52:33,106 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,124 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | job 6744934188 has completed (purged errors)
[2025-07-28 04:53:07] 2025-07-28 08:52:33,125 | INFO     | overall cleanup function is called
[2025-07-28 04:53:07] 2025-07-28 08:52:34,132 | INFO     | --- collectZombieJob: --- 10, [1897186]
[2025-07-28 04:53:07] 2025-07-28 08:52:34,133 | INFO     | zombie collector waiting for pid 1897186
[2025-07-28 04:53:07] 2025-07-28 08:52:34,133 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:53:07] 2025-07-28 08:52:34,133 | INFO     | collected zombie processes
[2025-07-28 04:53:07] 2025-07-28 08:52:34,133 | INFO     | will attempt to kill all subprocesses of pid=1897186
[2025-07-28 04:53:07] 2025-07-28 08:52:34,508 | INFO     | process IDs to be killed: [1897186] (in reverse order)
[2025-07-28 04:53:07] 2025-07-28 08:52:34,625 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:53:07] 2025-07-28 08:52:34,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:53:07] 2025-07-28 08:52:34,646 | INFO     | did not find any defunct processes belonging to 1897186
[2025-07-28 04:53:07] 2025-07-28 08:52:34,668 | INFO     | did not find any defunct processes belonging to 1897186
[2025-07-28 04:53:07] 2025-07-28 08:52:34,668 | INFO     | ready for new job
[2025-07-28 04:53:07] 2025-07-28 08:52:34,668 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:53:07] 2025-07-28 08:52:34,669 | INFO     | ***************************************
[2025-07-28 04:53:07] 2025-07-28 08:52:34,670 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:53:07] 2025-07-28 08:52:34,670 | INFO     | ***************************************
[2025-07-28 04:53:07] 2025-07-28 08:52:34,670 | INFO     | 
[2025-07-28 04:53:07] 2025-07-28 08:52:34,688 | INFO     | architecture information:
[2025-07-28 04:53:07] 2025-07-28 08:52:34,688 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:53:07] 2025-07-28 08:52:34,702 | INFO     | cat /etc/os-release:
[2025-07-28 04:53:07] NAME="CentOS Linux"
[2025-07-28 04:53:07] VERSION="7 (Core)"
[2025-07-28 04:53:07] ID="centos"
[2025-07-28 04:53:07] ID_LIKE="rhel fedora"
[2025-07-28 04:53:07] VERSION_ID="7"
[2025-07-28 04:53:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:53:07] ANSI_COLOR="0;31"
[2025-07-28 04:53:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:53:07] HOME_URL="https://www.centos.org/"
[2025-07-28 04:53:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:53:07] 
[2025-07-28 04:53:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:53:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:53:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:53:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:53:07] 
[2025-07-28 04:53:07] 2025-07-28 08:52:34,702 | INFO     | ***************************************
[2025-07-28 04:53:07] 2025-07-28 08:52:35,205 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 04:53:07] 2025-07-28 08:52:35,217 | INFO     | sufficient remaining disk space (173870678016 B)
[2025-07-28 04:53:07] 2025-07-28 08:52:35,218 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:53:07] 2025-07-28 08:52:35,218 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:53:07] 2025-07-28 08:52:35,218 | INFO     | update_server=False
[2025-07-28 04:53:07] 2025-07-28 08:52:35,218 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:53:07] 2025-07-28 08:52:35,218 | INFO     | all data control threads have been joined
[2025-07-28 04:53:07] 2025-07-28 08:52:35,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:53:07] 2025-07-28 08:52:35,239 | INFO     | aborting loop
[2025-07-28 04:53:07] 2025-07-28 08:52:35,328 | INFO     | all job control threads have been joined
[2025-07-28 04:53:07] 2025-07-28 08:52:36,129 | INFO     | all payload control threads have been joined
[2025-07-28 04:53:07] 2025-07-28 08:52:36,223 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:36,224 | INFO     | [data] control thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:36,244 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:36,333 | INFO     | [job] control thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:36,358 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:36,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:53:07] 2025-07-28 08:52:36,771 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:36,904 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:36,931 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:37,134 | INFO     | [payload] control thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:37,563 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:37,645 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:53:07] 2025-07-28 08:52:37,665 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:37,669 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:37,670 | INFO     | [job] validate thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:38,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:53:07] 2025-07-28 08:52:38,638 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:39,120 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:41,651 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:53:07] 2025-07-28 08:52:41,962 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140125749540672)>', '<ExcThread(monitor, started 140124935395072)>']
[2025-07-28 04:53:07] 2025-07-28 08:52:46,984 | INFO     | all workflow threads have been joined
[2025-07-28 04:53:07] 2025-07-28 08:52:46,984 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:53:07] 2025-07-28 08:52:46,985 | INFO     | traces error code: 0
[2025-07-28 04:53:07] 2025-07-28 08:52:46,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:53:07] 2025-07-28 08:53:06,147 | INFO     | PID=1884078 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 04:53:07] 2025-07-28 08:53:06,148 | INFO     | .. there are 18 such processes running
[2025-07-28 04:53:07] 2025-07-28 08:53:06,149 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:53:07] 2025-07-28 08:53:06,149 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:53:07] 2025-07-28 08:53:06,149 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:53:07] 2025-07-28 08:53:06,149 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:53:07] 2025-07-28 08:53:06,149 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 04:53:07] 2025-07-28 08:53:06,149 | INFO     | [monitor] control thread has ended
[2025-07-28 04:53:07] 2025-07-28 08:53:06,819 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:53:07] 2025-07-28 08:53:06,828 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:53:07] 2025-07-28 08:53:06,831 [wrapper] pilotpid: 1884078
[2025-07-28 04:53:07] 2025-07-28 08:53:06,835 [wrapper] Pilot exit status: 0
[2025-07-28 04:53:07] 2025-07-28 08:53:06,844 [wrapper] pandaids: 6744934188
[2025-07-28 04:53:07] 2025-07-28 08:53:06,929 [wrapper] cleanup supervisor_pilot 2686494 1884079
[2025-07-28 04:53:07] 2025-07-28 08:53:06,931 [wrapper] Test setup, not cleaning
[2025-07-28 04:53:07] 2025-07-28 08:53:06,933 [wrapper] apfmon messages muted
[2025-07-28 04:53:07] 2025-07-28 08:53:06,936 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:53:07] 2025-07-28 08:53:06,938 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:53:07]  *** Error codes and diagnostics ***
[2025-07-28 04:53:07]     "exeErrorCode": 0,
[2025-07-28 04:53:07]     "exeErrorDiag": "",
[2025-07-28 04:53:07]     "pilotErrorCode": 0,
[2025-07-28 04:53:07]     "pilotErrorDiag": "",
[2025-07-28 04:53:07]  *** Listing of results directory ***
[2025-07-28 04:53:07] total 341492
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas    530466 Jul 24 17:32 pilot3.tar.gz
[2025-07-28 04:53:07] -rwx------. 1 boincer umatlas     36292 Jul 24 17:46 runpilot2-wrapper.sh
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas      5112 Jul 24 17:46 queuedata.json
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas       100 Jul 28 03:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:53:07] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 03:58 run_atlas
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas       105 Jul 28 03:58 job.xml
[2025-07-28 04:53:07] -rw-r--r--. 2 boincer umatlas 143778958 Jul 28 03:58 EVNT.45743347._000598.pool.root.1
[2025-07-28 04:53:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 03:58 start_atlas.sh
[2025-07-28 04:53:07] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 03:58 shared
[2025-07-28 04:53:07] -rw-r--r--. 2 boincer umatlas    542891 Jul 28 03:58 input.tar.gz
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas         0 Jul 28 03:58 boinc_lockfile
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 03:58 pandaJob.out
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas    978452 Jul 28 03:58 agis_schedconf.cvmfs.json
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas   1593052 Jul 28 03:58 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:53:07] drwx------. 4 boincer umatlas      4096 Jul 28 03:58 pilot3
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas      7162 Jul 28 04:45 init_data.xml
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas 200782620 Jul 28 04:51 HITS.45743349._010763.pool.root.1
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas       529 Jul 28 04:51 boinc_task_state.xml
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas      1050 Jul 28 04:52 memory_monitor_summary.json
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas    286873 Jul 28 04:52 log.45743349._010763.job.log.tgz.1
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas      7801 Jul 28 04:52 heartbeat.json
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 04:53 boinc_mmap_file
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas        27 Jul 28 04:53 wrapper_checkpoint.txt
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas       893 Jul 28 04:53 pilotlog.txt
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas        95 Jul 28 04:53 pilot_heartbeat.json
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas    336123 Jul 28 04:53 log.45743349._010763.job.log.1
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas       357 Jul 28 04:53 output.list
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas       620 Jul 28 04:53 runtime_log
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas    645120 Jul 28 04:53 result.tar.gz
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas      8655 Jul 28 04:53 runtime_log.err
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas       656 Jul 28 04:53 3OpKDm1wIz7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmdsNLDmj73Nkm.diag
[2025-07-28 04:53:07] -rw-r--r--. 1 boincer umatlas     21671 Jul 28 04:53 stderr.txt
[2025-07-28 04:53:07] HITS file was successfully produced:
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas 200782620 Jul 28 04:51 shared/HITS.pool.root.1
[2025-07-28 04:53:07]  *** Contents of shared directory: ***
[2025-07-28 04:53:07] total 337676
[2025-07-28 04:53:07] -rw-r--r--. 2 boincer umatlas 143778958 Jul 28 03:58 ATLAS.root_0
[2025-07-28 04:53:07] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 03:58 start_atlas.sh
[2025-07-28 04:53:07] -rw-r--r--. 2 boincer umatlas    542891 Jul 28 03:58 input.tar.gz
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas 200782620 Jul 28 04:51 HITS.pool.root.1
[2025-07-28 04:53:07] -rw-------. 1 boincer umatlas    645120 Jul 28 04:53 result.tar.gz
04:53:09 (1880404): run_atlas exited; CPU time 23342.760127
04:53:09 (1880404): called boinc_finish(0)

</stderr_txt>
]]>

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