Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:39:10 (5081): wrapper (7.7.26015): starting
03:39:10 (5081): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 03:39:10] Arguments: --nthreads 12
[2025-07-28 03:39:10] Threads: 12
[2025-07-28 03:39:10] Checking for CVMFS
[2025-07-28 03:39:10] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 03:39:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 03:39:10] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 03:39:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 03:39:10] 2.11.2.0 2979 113166 90588 148840 3 1 15312436 20275200 1 130560 0 39380814 99.972 9653115 10508 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 03:39:10] CVMFS is ok
[2025-07-28 03:39:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 03:39:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 03:39:10] Further information can be found at the LHC@home message board.
[2025-07-28 03:39:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 03:39:10] Checking for apptainer binary...
[2025-07-28 03:39:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 03:39:10] Running /usr/bin/apptainer --version
[2025-07-28 03:39:10] apptainer version 1.3.2-1.el7
[2025-07-28 03:39:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 03:39:11] c-205-21.aglt2.org
[2025-07-28 03:39:11] apptainer works
[2025-07-28 03:39:11] Set ATHENA_PROC_NUMBER=12
[2025-07-28 03:39:11] Set ATHENA_CORE_NUMBER=12
[2025-07-28 03:39:12] Starting ATLAS job with PandaID=6748520436
[2025-07-28 03:39:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 05:03:38]  *** The last 200 lines of the pilot log: ***
[2025-07-28 05:03:38]  mtime=0
[2025-07-28 05:03:38]  protocol_id=None
[2025-07-28 05:03:38]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 05:03:38]  replicas=None
[2025-07-28 05:03:38]  scope=mc23_13p6TeV
[2025-07-28 05:03:38]  status=None
[2025-07-28 05:03:38]  status_code=0
[2025-07-28 05:03:38]  storage_token=
[2025-07-28 05:03:38]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748520436/log.45743349._056311.job.log.tgz.1
[2025-07-28 05:03:38]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/25/log.45743349._056311.job.log.tgz.1
[2025-07-28 05:03:38]  workdir=None
[2025-07-28 05:03:38] ]
[2025-07-28 05:03:38] 2025-07-28 09:02:57,171 | INFO     | transferring file log.45743349._056311.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748520436/log.45743349._056311.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 05:03:38] 2025-07-28 09:02:57,171 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748520436/log.45743349._056311.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056311.job
[2025-07-28 05:03:38] 2025-07-28 09:02:57,192 | INFO     | adding to output.list: log.45743349._056311.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/93/25/log.45743349._056311.job.log.tg
[2025-07-28 05:03:38] 2025-07-28 09:02:57,194 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 05:03:38] 2025-07-28 09:02:57,194 | INFO     | summary of transferred files:
[2025-07-28 05:03:38] 2025-07-28 09:02:57,194 | INFO     |  -- lfn=log.45743349._056311.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 05:03:38] 2025-07-28 09:02:57,195 | INFO     | stage-out finished correctly
[2025-07-28 05:03:38] 2025-07-28 09:02:57,284 | INFO     | number of running child processes to parent process 15173: 1
[2025-07-28 05:03:38] 2025-07-28 09:02:57,284 | INFO     | maximum number of monitored processes: 6
[2025-07-28 05:03:38] 2025-07-28 09:02:58,713 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 05:03:38] 2025-07-28 09:02:58,797 | INFO     | job 6748520436 has state=finished
[2025-07-28 05:03:38] 2025-07-28 09:02:58,798 | INFO     | preparing for final server update for job 6748520436 in state='finished'
[2025-07-28 05:03:38] 2025-07-28 09:02:58,798 | INFO     | this job has now completed (state=finished)
[2025-07-28 05:03:38] 2025-07-28 09:02:58,798 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 05:03:38] 2025-07-28 09:02:58,798 | INFO     | log transfer has been attempted: DONE
[2025-07-28 05:03:38] 2025-07-28 09:02:58,799 | INFO     | job 6748520436 has finished - writing final server update
[2025-07-28 05:03:38] 2025-07-28 09:02:58,799 | INFO     | total number of processed events: 400 (read)
[2025-07-28 05:03:38] 2025-07-28 09:02:58,800 | INFO     | executing command: lscpu
[2025-07-28 05:03:38] 2025-07-28 09:02:58,826 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 05:03:38] 2025-07-28 09:02:59,786 | INFO     | monitor loop #374: job 0:6748520436 is in state 'finished'
[2025-07-28 05:03:38] 2025-07-28 09:02:59,787 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:03:38] 2025-07-28 09:03:01,626 | INFO     | PID=8763 has CPU usage=7.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 05:03:38] 2025-07-28 09:03:02,290 | INFO     | monitor loop #375: job 0:6748520436 is in state 'finished'
[2025-07-28 05:03:38] 2025-07-28 09:03:02,290 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,793 | INFO     | monitor loop #376: job 0:6748520436 is in state 'finished'
[2025-07-28 05:03:38] 2025-07-28 09:03:04,794 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,842 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 05:03:38] 2025-07-28 09:03:04,846 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-07-28 05:03:38] 2025-07-28 09:03:04,849 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748520436/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,850 | INFO     | extracted standard info from prmon json
[2025-07-28 05:03:38] 2025-07-28 09:03:04,850 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 05:03:38] 2025-07-28 09:03:04,850 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 05:03:38] 2025-07-28 09:03:04,850 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 05:03:38] 2025-07-28 09:03:04,850 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 05:03:38] 2025-07-28 09:03:04,852 | INFO     | fitting pss+swap vs Time
[2025-07-28 05:03:38] 2025-07-28 09:03:04,852 | INFO     | sum of square deviations: 130793150.0
[2025-07-28 05:03:38] 2025-07-28 09:03:04,853 | INFO     | sum of deviations: -10701015279.999998
[2025-07-28 05:03:38] 2025-07-28 09:03:04,853 | INFO     | mean x: 1753690959.0
[2025-07-28 05:03:38] 2025-07-28 09:03:04,853 | INFO     | mean y: 2792700.493333333
[2025-07-28 05:03:38] 2025-07-28 09:03:04,853 | INFO     | -- intersect: 143483347673.417
[2025-07-28 05:03:38] 2025-07-28 09:03:04,853 | INFO     | intersect: 143483347673.417
[2025-07-28 05:03:38] 2025-07-28 09:03:04,853 | INFO     | chi2: 0.06070958509533496
[2025-07-28 05:03:38] 2025-07-28 09:03:04,853 | INFO     | -- intersect: 143483347673.417
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | current memory leak: -81.82 B/s (using 75 data points, chi2=0.06)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | could have reported an average CPU frequency of 2052 MHz (6 samples)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | ..............................
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | . Timing measurements:
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | . get job = 0 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | . initial setup = 2 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | . payload setup = 9 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,854 | INFO     | . stage-in = 0 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,855 | INFO     | . payload execution = 4981 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,855 | INFO     | . stage-out = 0 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,855 | INFO     | . log creation = 0 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,855 | INFO     | ..............................
[2025-07-28 05:03:38] 2025-07-28 09:03:04,940 | INFO     | 
[2025-07-28 05:03:38] 2025-07-28 09:03:04,940 | INFO     | job summary report
[2025-07-28 05:03:38] 2025-07-28 09:03:04,940 | INFO     | --------------------------------------------------
[2025-07-28 05:03:38] 2025-07-28 09:03:04,940 | INFO     | PanDA job id: 6748520436
[2025-07-28 05:03:38] 2025-07-28 09:03:04,941 | INFO     | task id: 45743349
[2025-07-28 05:03:38] 2025-07-28 09:03:04,941 | INFO     | errors: (none)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,941 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 05:03:38] 2025-07-28 09:03:04,941 | INFO     | pilot state: finished 
[2025-07-28 05:03:38] 2025-07-28 09:03:04,941 | INFO     | transexitcode: 0
[2025-07-28 05:03:38] 2025-07-28 09:03:04,941 | INFO     | exeerrorcode: 0
[2025-07-28 05:03:38] 2025-07-28 09:03:04,941 | INFO     | exeerrordiag: 
[2025-07-28 05:03:38] 2025-07-28 09:03:04,942 | INFO     | exitcode: 0
[2025-07-28 05:03:38] 2025-07-28 09:03:04,942 | INFO     | exitmsg: OK
[2025-07-28 05:03:38] 2025-07-28 09:03:04,942 | INFO     | cpuconsumptiontime: 54567 s
[2025-07-28 05:03:38] 2025-07-28 09:03:04,942 | INFO     | nevents: 400
[2025-07-28 05:03:38] 2025-07-28 09:03:04,942 | INFO     | neventsw: 0
[2025-07-28 05:03:38] 2025-07-28 09:03:04,942 | INFO     | pid: 15173
[2025-07-28 05:03:38] 2025-07-28 09:03:04,943 | INFO     | pgrp: 15173
[2025-07-28 05:03:38] 2025-07-28 09:03:04,943 | INFO     | corecount: 12
[2025-07-28 05:03:38] 2025-07-28 09:03:04,943 | INFO     | event service: False
[2025-07-28 05:03:38] 2025-07-28 09:03:04,943 | INFO     | sizes: {0: 2397253, 1: 2397452, 5: 2397714, 11: 2397770, 4994: 2424044, 4995: 2433042, 4997: 2433226, 5003: 2433420}
[2025-07-28 05:03:38] 2025-07-28 09:03:04,943 | INFO     | --------------------------------------------------
[2025-07-28 05:03:38] 2025-07-28 09:03:04,943 | INFO     | 
[2025-07-28 05:03:38] 2025-07-28 09:03:04,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 05:03:38] 2025-07-28 09:03:04,966 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,967 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,967 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,967 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,967 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,967 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,968 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,968 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,968 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,968 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,968 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,969 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,969 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,969 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,969 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,969 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,969 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,970 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,970 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,970 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 05:03:38] 2025-07-28 09:03:04,970 | INFO     | job 6748520436 has completed (purged errors)
[2025-07-28 05:03:38] 2025-07-28 09:03:04,970 | INFO     | overall cleanup function is called
[2025-07-28 05:03:38] 2025-07-28 09:03:05,978 | INFO     | --- collectZombieJob: --- 10, [15173]
[2025-07-28 05:03:38] 2025-07-28 09:03:05,978 | INFO     | zombie collector waiting for pid 15173
[2025-07-28 05:03:38] 2025-07-28 09:03:05,987 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 05:03:38] 2025-07-28 09:03:05,988 | INFO     | collected zombie processes
[2025-07-28 05:03:38] 2025-07-28 09:03:05,988 | INFO     | will attempt to kill all subprocesses of pid=15173
[2025-07-28 05:03:38] 2025-07-28 09:03:06,077 | INFO     | process IDs to be killed: [15173] (in reverse order)
[2025-07-28 05:03:38] 2025-07-28 09:03:06,128 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 05:03:38] 2025-07-28 09:03:06,128 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 05:03:38] 2025-07-28 09:03:06,131 | INFO     | did not find any defunct processes belonging to 15173
[2025-07-28 05:03:38] 2025-07-28 09:03:06,134 | INFO     | did not find any defunct processes belonging to 15173
[2025-07-28 05:03:38] 2025-07-28 09:03:06,134 | INFO     | ready for new job
[2025-07-28 05:03:38] 2025-07-28 09:03:06,134 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 05:03:38] 2025-07-28 09:03:06,135 | INFO     | ***************************************
[2025-07-28 05:03:38] 2025-07-28 09:03:06,135 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 05:03:38] 2025-07-28 09:03:06,136 | INFO     | ***************************************
[2025-07-28 05:03:38] 2025-07-28 09:03:06,136 | INFO     | 
[2025-07-28 05:03:38] 2025-07-28 09:03:06,136 | INFO     | architecture information:
[2025-07-28 05:03:38] 2025-07-28 09:03:06,137 | INFO     | executing command: cat /etc/os-release
[2025-07-28 05:03:38] 2025-07-28 09:03:06,151 | INFO     | cat /etc/os-release:
[2025-07-28 05:03:38] NAME="CentOS Linux"
[2025-07-28 05:03:38] VERSION="7 (Core)"
[2025-07-28 05:03:38] ID="centos"
[2025-07-28 05:03:38] ID_LIKE="rhel fedora"
[2025-07-28 05:03:38] VERSION_ID="7"
[2025-07-28 05:03:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 05:03:38] ANSI_COLOR="0;31"
[2025-07-28 05:03:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 05:03:38] HOME_URL="https://www.centos.org/"
[2025-07-28 05:03:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 05:03:38] 
[2025-07-28 05:03:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 05:03:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 05:03:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 05:03:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 05:03:38] 
[2025-07-28 05:03:38] 2025-07-28 09:03:06,151 | INFO     | ***************************************
[2025-07-28 05:03:38] 2025-07-28 09:03:06,654 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 05:03:38] 2025-07-28 09:03:06,671 | INFO     | sufficient remaining disk space (29510074368 B)
[2025-07-28 05:03:38] 2025-07-28 09:03:06,671 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 05:03:38] 2025-07-28 09:03:06,671 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 05:03:38] 2025-07-28 09:03:06,671 | INFO     | update_server=False
[2025-07-28 05:03:38] 2025-07-28 09:03:06,672 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 05:03:38] 2025-07-28 09:03:06,672 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 05:03:38] 2025-07-28 09:03:06,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 05:03:38] 2025-07-28 09:03:06,673 | INFO     | aborting loop
[2025-07-28 05:03:38] 2025-07-28 09:03:06,925 | INFO     | all payload control threads have been joined
[2025-07-28 05:03:38] 2025-07-28 09:03:07,400 | INFO     | all data control threads have been joined
[2025-07-28 05:03:38] 2025-07-28 09:03:07,677 | INFO     | [job] retrieve thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:07,678 | INFO     | [job] queue monitor thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:07,678 | INFO     | [job] job monitor thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:07,757 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:07,798 | INFO     | [payload] failed_post thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:07,805 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 05:03:38] 2025-07-28 09:03:07,850 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:07,906 | INFO     | all job control threads have been joined
[2025-07-28 05:03:38] 2025-07-28 09:03:07,930 | INFO     | [payload] control thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:08,139 | INFO     | [data] copytool_in thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:08,383 | INFO     | [job] validate thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:08,406 | INFO     | [data] control thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:08,543 | INFO     | [payload] validate_post thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:08,595 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:08,911 | INFO     | [job] control thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:09,025 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:09,306 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 05:03:38] 2025-07-28 09:03:09,810 | INFO     | [data] copytool_out thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:13,312 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 05:03:38] 2025-07-28 09:03:15,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139809484093248)>', '<ExcThread(monitor, started 139808684889856)>']
[2025-07-28 05:03:38] 2025-07-28 09:03:20,424 | INFO     | all workflow threads have been joined
[2025-07-28 05:03:38] 2025-07-28 09:03:20,425 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 05:03:38] 2025-07-28 09:03:20,425 | INFO     | traces error code: 0
[2025-07-28 05:03:38] 2025-07-28 09:03:20,425 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 05:03:38] 2025-07-28 09:03:37,834 | INFO     | PID=8763 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-07-28 05:03:38] 2025-07-28 09:03:37,835 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 05:03:38] 2025-07-28 09:03:37,835 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 05:03:38] 2025-07-28 09:03:37,835 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 05:03:38] 2025-07-28 09:03:37,835 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 05:03:38] 2025-07-28 09:03:37,835 | INFO     | [monitor] control thread has ended
[2025-07-28 05:03:38] 2025-07-28 09:03:37,927 [wrapper] ==== pilot stdout END ====
[2025-07-28 05:03:38] 2025-07-28 09:03:37,931 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 05:03:38] 2025-07-28 09:03:37,935 [wrapper] pilotpid: 8763
[2025-07-28 05:03:38] 2025-07-28 09:03:37,939 [wrapper] Pilot exit status: 0
[2025-07-28 05:03:38] 2025-07-28 09:03:37,954 [wrapper] pandaids: 6748520436
[2025-07-28 05:03:38] 2025-07-28 09:03:37,996 [wrapper] cleanup supervisor_pilot  6632 8764
[2025-07-28 05:03:38] 2025-07-28 09:03:37,999 [wrapper] Test setup, not cleaning
[2025-07-28 05:03:38] 2025-07-28 09:03:38,004 [wrapper] apfmon messages muted
[2025-07-28 05:03:38] 2025-07-28 09:03:38,007 [wrapper] ==== wrapper stdout END ====
[2025-07-28 05:03:38] 2025-07-28 09:03:38,011 [wrapper] ==== wrapper stderr END ====
[2025-07-28 05:03:38]  *** Error codes and diagnostics ***
[2025-07-28 05:03:38]     "exeErrorCode": 0,
[2025-07-28 05:03:38]     "exeErrorDiag": "",
[2025-07-28 05:03:38]     "pilotErrorCode": 0,
[2025-07-28 05:03:38]     "pilotErrorDiag": "",
[2025-07-28 05:03:38]  *** Listing of results directory ***
[2025-07-28 05:03:38] total 356716
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas    550332 Jun 18 11:33 pilot3.tar.gz
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 03:34 queuedata.json
[2025-07-28 05:03:38] -rwx------ 1 boincer umatlas     36292 Jul 28 03:38 runpilot2-wrapper.sh
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas       100 Jul 28 03:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 05:03:38] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 03:39 run_atlas
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas       105 Jul 28 03:39 job.xml
[2025-07-28 05:03:38] -rw-r--r-- 2 boincer umatlas 148498452 Jul 28 03:39 EVNT.45743347._002990.pool.root.1
[2025-07-28 05:03:38] drwxrwx--x 2 boincer umatlas      4096 Jul 28 03:39 shared
[2025-07-28 05:03:38] -rw-r--r-- 2 boincer umatlas    564563 Jul 28 03:39 input.tar.gz
[2025-07-28 05:03:38] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 03:39 start_atlas.sh
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas         0 Jul 28 03:39 boinc_lockfile
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas      2562 Jul 28 03:39 pandaJob.out
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas    978452 Jul 28 03:39 agis_schedconf.cvmfs.json
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas   1593052 Jul 28 03:39 agis_ddmendpoints.agis.ALL.json
[2025-07-28 05:03:38] drwx------ 6 boincer umatlas      4096 Jul 28 03:39 pilot3
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas      5867 Jul 28 04:54 init_data.xml
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas 211163602 Jul 28 05:02 HITS.45743349._056311.pool.root.1
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas       529 Jul 28 05:02 boinc_task_state.xml
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas      1045 Jul 28 05:02 memory_monitor_summary.json
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas    370106 Jul 28 05:02 log.45743349._056311.job.log.tgz.1
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas      7851 Jul 28 05:03 heartbeat.json
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 05:03 boinc_mmap_file
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas        27 Jul 28 05:03 wrapper_checkpoint.txt
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas        95 Jul 28 05:03 pilot_heartbeat.json
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas       744 Jul 28 05:03 pilotlog.txt
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas    479334 Jul 28 05:03 log.45743349._056311.job.log.1
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas       357 Jul 28 05:03 output.list
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas       620 Jul 28 05:03 runtime_log
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas    870400 Jul 28 05:03 result.tar.gz
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas       659 Jul 28 05:03 SkYLDmncX07n9Rq4apOajLDm4fhM0noT9bVof3QYDmSD3KDmLVMQfm.diag
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas      8662 Jul 28 05:03 runtime_log.err
[2025-07-28 05:03:38] -rw-r--r-- 1 boincer umatlas     21819 Jul 28 05:03 stderr.txt
[2025-07-28 05:03:38] HITS file was successfully produced:
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas 211163602 Jul 28 05:02 shared/HITS.pool.root.1
[2025-07-28 05:03:38]  *** Contents of shared directory: ***
[2025-07-28 05:03:38] total 352660
[2025-07-28 05:03:38] -rw-r--r-- 2 boincer umatlas 148498452 Jul 28 03:39 ATLAS.root_0
[2025-07-28 05:03:38] -rw-r--r-- 2 boincer umatlas    564563 Jul 28 03:39 input.tar.gz
[2025-07-28 05:03:38] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 03:39 start_atlas.sh
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas 211163602 Jul 28 05:02 HITS.pool.root.1
[2025-07-28 05:03:38] -rw------- 1 boincer umatlas    870400 Jul 28 05:03 result.tar.gz
05:03:39 (5081): run_atlas exited; CPU time 54547.173070
05:03:39 (5081): called boinc_finish(0)

</stderr_txt>
]]>

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