Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:28:12 (3330685): wrapper (7.7.26015): starting
03:28:12 (3330685): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 03:28:12] Arguments: --nthreads 12
[2025-07-28 03:28:12] Threads: 12
[2025-07-28 03:28:12] Checking for CVMFS
[2025-07-28 03:28:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 03:28:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 03:28:12] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 03:28:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 03:28:12] 2.13.1.0 407057 14588 287624 148840 1 259 40878545 40960000 9114 16776704 0 26016799 99.682 40996971 35347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 03:28:12] CVMFS is ok
[2025-07-28 03:28:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 03:28:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 03:28:12] Further information can be found at the LHC@home message board.
[2025-07-28 03:28:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 03:28:12] Checking for apptainer binary...
[2025-07-28 03:28:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 03:28:12] Running /usr/bin/apptainer --version
[2025-07-28 03:28:12] apptainer version 1.4.1-1.el9
[2025-07-28 03:28:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 03:28:13] c-210-31-3.aglt2.org
[2025-07-28 03:28:13] apptainer works
[2025-07-28 03:28:13] Set ATHENA_PROC_NUMBER=12
[2025-07-28 03:28:13] Set ATHENA_CORE_NUMBER=12
[2025-07-28 03:28:13] Starting ATLAS job with PandaID=6748515868
[2025-07-28 03:28:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:53:14]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:53:14]  replicas=None
[2025-07-28 04:53:14]  scope=mc23_13p6TeV
[2025-07-28 04:53:14]  status=None
[2025-07-28 04:53:14]  status_code=0
[2025-07-28 04:53:14]  storage_token=
[2025-07-28 04:53:14]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748515868/log.45743349._056303.job.log.tgz.1
[2025-07-28 04:53:14]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/2b/log.45743349._056303.job.log.tgz.1
[2025-07-28 04:53:14]  workdir=None
[2025-07-28 04:53:14] ]
[2025-07-28 04:53:14] 2025-07-28 08:52:31,327 | INFO     | transferring file log.45743349._056303.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748515868/log.45743349._056303.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 04:53:14] 2025-07-28 08:52:31,327 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748515868/log.45743349._056303.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056303.job
[2025-07-28 04:53:14] 2025-07-28 08:52:31,351 | INFO     | adding to output.list: log.45743349._056303.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/2b/log.45743349._056303.job.log.tg
[2025-07-28 04:53:14] 2025-07-28 08:52:31,353 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 04:53:14] 2025-07-28 08:52:31,353 | INFO     | summary of transferred files:
[2025-07-28 04:53:14] 2025-07-28 08:52:31,353 | INFO     |  -- lfn=log.45743349._056303.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 04:53:14] 2025-07-28 08:52:31,353 | INFO     | stage-out finished correctly
[2025-07-28 04:53:14] 2025-07-28 08:52:31,530 | INFO     | PID=3334371 has CPU usage=12.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 04:53:14] 2025-07-28 08:52:31,530 | INFO     | .. there are 11 such processes running
[2025-07-28 04:53:14] 2025-07-28 08:52:32,033 | INFO     | monitor loop #366: job 0:6748515868 is in state 'finished'
[2025-07-28 04:53:14] 2025-07-28 08:52:32,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:53:14] 2025-07-28 08:52:33,805 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 04:53:14] 2025-07-28 08:52:34,272 | INFO     | job 6748515868 has state=finished
[2025-07-28 04:53:14] 2025-07-28 08:52:34,272 | INFO     | preparing for final server update for job 6748515868 in state='finished'
[2025-07-28 04:53:14] 2025-07-28 08:52:34,273 | INFO     | this job has now completed (state=finished)
[2025-07-28 04:53:14] 2025-07-28 08:52:34,273 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 04:53:14] 2025-07-28 08:52:34,273 | INFO     | log transfer has been attempted: DONE
[2025-07-28 04:53:14] 2025-07-28 08:52:34,273 | INFO     | job 6748515868 has finished - writing final server update
[2025-07-28 04:53:14] 2025-07-28 08:52:34,274 | INFO     | total number of processed events: 400 (read)
[2025-07-28 04:53:14] 2025-07-28 08:52:34,276 | INFO     | executing command: lscpu
[2025-07-28 04:53:14] 2025-07-28 08:52:34,332 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:53:14] 2025-07-28 08:52:34,536 | INFO     | monitor loop #367: job 0:6748515868 is in state 'finished'
[2025-07-28 04:53:14] 2025-07-28 08:52:34,537 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:53:14] 2025-07-28 08:52:37,041 | INFO     | monitor loop #368: job 0:6748515868 is in state 'finished'
[2025-07-28 04:53:14] 2025-07-28 08:52:37,041 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:53:14] 2025-07-28 08:52:39,545 | INFO     | monitor loop #369: job 0:6748515868 is in state 'finished'
[2025-07-28 04:53:14] 2025-07-28 08:52:39,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:53:14] 2025-07-28 08:52:41,144 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 04:53:14] 2025-07-28 08:52:41,149 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2603.3161964285714
[2025-07-28 04:53:14] 2025-07-28 08:52:41,160 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748515868/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:53:14] 2025-07-28 08:52:41,161 | INFO     | extracted standard info from prmon json
[2025-07-28 04:53:14] 2025-07-28 08:52:41,161 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:53:14] 2025-07-28 08:52:41,161 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:53:14] 2025-07-28 08:52:41,162 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:53:14] 2025-07-28 08:52:41,162 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:53:14] 2025-07-28 08:52:41,165 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:53:14] 2025-07-28 08:52:41,165 | INFO     | sum of square deviations: 136099664.8815792
[2025-07-28 04:53:14] 2025-07-28 08:52:41,165 | INFO     | sum of deviations: -16595748060.815788
[2025-07-28 04:53:14] 2025-07-28 08:52:41,165 | INFO     | mean x: 1753690328.5394738
[2025-07-28 04:53:14] 2025-07-28 08:52:41,166 | INFO     | mean y: 2942116.6052631577
[2025-07-28 04:53:14] 2025-07-28 08:52:41,166 | INFO     | -- intersect: 213844782906.2479
[2025-07-28 04:53:14] 2025-07-28 08:52:41,166 | INFO     | intersect: 213844782906.2479
[2025-07-28 04:53:14] 2025-07-28 08:52:41,166 | INFO     | chi2: 0.12057438866017475
[2025-07-28 04:53:14] 2025-07-28 08:52:41,166 | INFO     | -- intersect: 213844782906.2479
[2025-07-28 04:53:14] 2025-07-28 08:52:41,166 | INFO     | current memory leak: -121.94 B/s (using 76 data points, chi2=0.12)
[2025-07-28 04:53:14] 2025-07-28 08:52:41,167 | INFO     | could have reported an average CPU frequency of 2630 MHz (6 samples)
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | ..............................
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | . Timing measurements:
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | . get job = 0 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | . initial setup = 2 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | . payload setup = 8 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | . stage-in = 0 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | . payload execution = 5015 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,168 | INFO     | . stage-out = 1 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,169 | INFO     | . log creation = 0 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,169 | INFO     | ..............................
[2025-07-28 04:53:14] 2025-07-28 08:52:41,305 | INFO     | 
[2025-07-28 04:53:14] 2025-07-28 08:52:41,305 | INFO     | job summary report
[2025-07-28 04:53:14] 2025-07-28 08:52:41,305 | INFO     | --------------------------------------------------
[2025-07-28 04:53:14] 2025-07-28 08:52:41,305 | INFO     | PanDA job id: 6748515868
[2025-07-28 04:53:14] 2025-07-28 08:52:41,305 | INFO     | task id: 45743349
[2025-07-28 04:53:14] 2025-07-28 08:52:41,305 | INFO     | errors: (none)
[2025-07-28 04:53:14] 2025-07-28 08:52:41,305 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | pilot state: finished 
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | transexitcode: 0
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | exeerrorcode: 0
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | exeerrordiag: 
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | exitcode: 0
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | exitmsg: OK
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | cpuconsumptiontime: 49625 s
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | nevents: 400
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | neventsw: 0
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | pid: 3341173
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | pgrp: 3341173
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | corecount: 12
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | event service: False
[2025-07-28 04:53:14] 2025-07-28 08:52:41,306 | INFO     | sizes: {0: 2397310, 1: 2397452, 6: 2397714, 11: 2397742, 5028: 2424017, 5029: 2433015, 5032: 2433199, 5039: 2433393}
[2025-07-28 04:53:14] 2025-07-28 08:52:41,307 | INFO     | --------------------------------------------------
[2025-07-28 04:53:14] 2025-07-28 08:52:41,307 | INFO     | 
[2025-07-28 04:53:14] 2025-07-28 08:52:41,307 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 04:53:14] 2025-07-28 08:52:41,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,332 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:53:14] 2025-07-28 08:52:41,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:53:14] 2025-07-28 08:52:41,333 | INFO     | job 6748515868 has completed (purged errors)
[2025-07-28 04:53:14] 2025-07-28 08:52:41,333 | INFO     | overall cleanup function is called
[2025-07-28 04:53:14] 2025-07-28 08:52:42,343 | INFO     | --- collectZombieJob: --- 10, [3341173]
[2025-07-28 04:53:14] 2025-07-28 08:52:42,343 | INFO     | zombie collector waiting for pid 3341173
[2025-07-28 04:53:14] 2025-07-28 08:52:42,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:53:14] 2025-07-28 08:52:42,344 | INFO     | collected zombie processes
[2025-07-28 04:53:14] 2025-07-28 08:52:42,344 | INFO     | will attempt to kill all subprocesses of pid=3341173
[2025-07-28 04:53:14] 2025-07-28 08:52:42,647 | INFO     | process IDs to be killed: [3341173] (in reverse order)
[2025-07-28 04:53:14] 2025-07-28 08:52:42,770 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:53:14] 2025-07-28 08:52:42,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:53:14] 2025-07-28 08:52:42,785 | INFO     | did not find any defunct processes belonging to 3341173
[2025-07-28 04:53:14] 2025-07-28 08:52:42,800 | INFO     | did not find any defunct processes belonging to 3341173
[2025-07-28 04:53:14] 2025-07-28 08:52:42,801 | INFO     | ready for new job
[2025-07-28 04:53:14] 2025-07-28 08:52:42,801 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:53:14] 2025-07-28 08:52:42,803 | INFO     | ***************************************
[2025-07-28 04:53:14] 2025-07-28 08:52:42,804 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:53:14] 2025-07-28 08:52:42,804 | INFO     | ***************************************
[2025-07-28 04:53:14] 2025-07-28 08:52:42,804 | INFO     | 
[2025-07-28 04:53:14] 2025-07-28 08:52:42,808 | INFO     | architecture information:
[2025-07-28 04:53:14] 2025-07-28 08:52:42,809 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:53:14] 2025-07-28 08:52:42,830 | INFO     | cat /etc/os-release:
[2025-07-28 04:53:14] NAME="CentOS Linux"
[2025-07-28 04:53:14] VERSION="7 (Core)"
[2025-07-28 04:53:14] ID="centos"
[2025-07-28 04:53:14] ID_LIKE="rhel fedora"
[2025-07-28 04:53:14] VERSION_ID="7"
[2025-07-28 04:53:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:53:14] ANSI_COLOR="0;31"
[2025-07-28 04:53:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:53:14] HOME_URL="https://www.centos.org/"
[2025-07-28 04:53:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:53:14] 
[2025-07-28 04:53:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:53:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:53:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:53:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:53:14] 
[2025-07-28 04:53:14] 2025-07-28 08:52:42,831 | INFO     | ***************************************
[2025-07-28 04:53:14] 2025-07-28 08:52:43,333 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 04:53:14] 2025-07-28 08:52:43,358 | INFO     | sufficient remaining disk space (75503763456 B)
[2025-07-28 04:53:14] 2025-07-28 08:52:43,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:53:14] 2025-07-28 08:52:43,359 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:53:14] 2025-07-28 08:52:43,361 | INFO     | update_server=False
[2025-07-28 04:53:14] 2025-07-28 08:52:43,362 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:53:14] 2025-07-28 08:52:43,363 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:53:14] 2025-07-28 08:52:43,363 | INFO     | aborting loop
[2025-07-28 04:53:14] 2025-07-28 08:52:43,398 | INFO     | all data control threads have been joined
[2025-07-28 04:53:14] 2025-07-28 08:52:43,581 | INFO     | all payload control threads have been joined
[2025-07-28 04:53:14] 2025-07-28 08:52:44,367 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:44,368 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:44,373 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:44,390 | INFO     | all job control threads have been joined
[2025-07-28 04:53:14] 2025-07-28 08:52:44,404 | INFO     | [data] control thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:44,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:53:14] 2025-07-28 08:52:44,478 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:53:14] 2025-07-28 08:52:44,572 | INFO     | [job] validate thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:44,586 | INFO     | [payload] control thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:44,776 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:45,278 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:45,395 | INFO     | [job] control thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:45,527 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:45,533 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:45,716 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:46,278 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:53:14] 2025-07-28 08:52:46,485 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:47,284 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:48,433 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:54,382 | INFO     | job.realtimelogging is not enabled
[2025-07-28 04:53:14] 2025-07-28 08:52:55,387 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:53:14] 2025-07-28 08:52:56,565 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715512784704)>', '<ExcThread(monitor, started 139715231581952)>']
[2025-07-28 04:53:14] 2025-07-28 08:53:01,590 | INFO     | all workflow threads have been joined
[2025-07-28 04:53:14] 2025-07-28 08:53:01,590 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:53:14] 2025-07-28 08:53:01,590 | INFO     | traces error code: 0
[2025-07-28 04:53:14] 2025-07-28 08:53:01,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:53:14] 2025-07-28 08:53:14,002 | INFO     | PID=3334371 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 04:53:14] 2025-07-28 08:53:14,002 | INFO     | .. there are 11 such processes running
[2025-07-28 04:53:14] 2025-07-28 08:53:14,003 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:53:14] 2025-07-28 08:53:14,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:53:14] 2025-07-28 08:53:14,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:53:14] 2025-07-28 08:53:14,004 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:53:14] 2025-07-28 08:53:14,004 | INFO     | [monitor] control thread has ended
[2025-07-28 04:53:14] 2025-07-28 08:53:14,197 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:53:14] 2025-07-28 08:53:14,203 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:53:14] 2025-07-28 08:53:14,210 [wrapper] pilotpid: 3334371
[2025-07-28 04:53:14] 2025-07-28 08:53:14,216 [wrapper] Pilot exit status: 0
[2025-07-28 04:53:14] 2025-07-28 08:53:14,237 [wrapper] pandaids: 6748515868
[2025-07-28 04:53:14] 2025-07-28 08:53:14,315 [wrapper] cleanup supervisor_pilot 3565842 3334373
[2025-07-28 04:53:14] 2025-07-28 08:53:14,320 [wrapper] Test setup, not cleaning
[2025-07-28 04:53:14] 2025-07-28 08:53:14,325 [wrapper] apfmon messages muted
[2025-07-28 04:53:14] 2025-07-28 08:53:14,329 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:53:14] 2025-07-28 08:53:14,333 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:53:14]  *** Error codes and diagnostics ***
[2025-07-28 04:53:14]     "exeErrorCode": 0,
[2025-07-28 04:53:14]     "exeErrorDiag": "",
[2025-07-28 04:53:14]     "pilotErrorCode": 0,
[2025-07-28 04:53:14]     "pilotErrorDiag": "",
[2025-07-28 04:53:14]  *** Listing of results directory ***
[2025-07-28 04:53:14] total 432340
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 03:26 queuedata.json
[2025-07-28 04:53:14] -rwx------. 1 boincer umatlas     36292 Jul 28 03:27 runpilot2-wrapper.sh
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 03:27 pilot3.tar.gz
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas       100 Jul 28 03:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:53:14] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 03:28 run_atlas
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas       105 Jul 28 03:28 job.xml
[2025-07-28 04:53:14] -rw-r--r--. 2 boincer umatlas 229365345 Jul 28 03:28 EVNT.45743347._002801.pool.root.1
[2025-07-28 04:53:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 03:28 start_atlas.sh
[2025-07-28 04:53:14] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 03:28 shared
[2025-07-28 04:53:14] -rw-r--r--. 2 boincer umatlas    542893 Jul 28 03:28 input.tar.gz
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas         0 Jul 28 03:28 boinc_lockfile
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 03:28 pandaJob.out
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas    978452 Jul 28 03:28 agis_schedconf.cvmfs.json
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas   1593052 Jul 28 03:28 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:53:14] drwx------. 4 boincer umatlas      4096 Jul 28 03:28 pilot3
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas      6841 Jul 28 04:45 init_data.xml
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas 207725876 Jul 28 04:51 HITS.45743349._056303.pool.root.1
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas       529 Jul 28 04:51 boinc_task_state.xml
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas      1053 Jul 28 04:52 memory_monitor_summary.json
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas    382299 Jul 28 04:52 log.45743349._056303.job.log.tgz.1
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas      7828 Jul 28 04:52 heartbeat.json
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas        27 Jul 28 04:53 wrapper_checkpoint.txt
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 04:53 boinc_mmap_file
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas        95 Jul 28 04:53 pilot_heartbeat.json
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas       823 Jul 28 04:53 pilotlog.txt
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas    493596 Jul 28 04:53 log.45743349._056303.job.log.1
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas       357 Jul 28 04:53 output.list
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas       620 Jul 28 04:53 runtime_log
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas    890880 Jul 28 04:53 result.tar.gz
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas       656 Jul 28 04:53 zZsKDm3RX07n9Rq4apOajLDm4fhM0noT9bVof3QYDmMD3KDmoSFc1n.diag
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas      8672 Jul 28 04:53 runtime_log.err
[2025-07-28 04:53:14] -rw-r--r--. 1 boincer umatlas     21986 Jul 28 04:53 stderr.txt
[2025-07-28 04:53:14] HITS file was successfully produced:
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas 207725876 Jul 28 04:51 shared/HITS.pool.root.1
[2025-07-28 04:53:14]  *** Contents of shared directory: ***
[2025-07-28 04:53:14] total 428280
[2025-07-28 04:53:14] -rw-r--r--. 2 boincer umatlas 229365345 Jul 28 03:28 ATLAS.root_0
[2025-07-28 04:53:14] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 03:28 start_atlas.sh
[2025-07-28 04:53:14] -rw-r--r--. 2 boincer umatlas    542893 Jul 28 03:28 input.tar.gz
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas 207725876 Jul 28 04:51 HITS.pool.root.1
[2025-07-28 04:53:14] -rw-------. 1 boincer umatlas    890880 Jul 28 04:53 result.tar.gz
04:53:16 (3330685): run_atlas exited; CPU time 49721.601826
04:53:16 (3330685): called boinc_finish(0)

</stderr_txt>
]]>

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