Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
03:08:25 (24882): wrapper (7.7.26015): starting
03:08:25 (24882): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 03:08:25] Arguments: --nthreads 12
[2025-07-28 03:08:25] Threads: 12
[2025-07-28 03:08:25] Checking for CVMFS
[2025-07-28 03:08:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 03:08:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 03:08:25] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 03:08:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 03:08:25] 2.11.2.0 2913 113122 96980 148839 2 1 15515794 20275201 1 130560 0 39689237 99.972 9848201 10849 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 03:08:25] CVMFS is ok
[2025-07-28 03:08:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 03:08:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 03:08:25] Further information can be found at the LHC@home message board.
[2025-07-28 03:08:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 03:08:25] Checking for apptainer binary...
[2025-07-28 03:08:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 03:08:25] Running /usr/bin/apptainer --version
[2025-07-28 03:08:25] apptainer version 1.3.2-1.el7
[2025-07-28 03:08:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 03:08:27] c-205-6.aglt2.org
[2025-07-28 03:08:27] apptainer works
[2025-07-28 03:08:27] Set ATHENA_PROC_NUMBER=12
[2025-07-28 03:08:27] Set ATHENA_CORE_NUMBER=12
[2025-07-28 03:08:27] Starting ATLAS job with PandaID=6748510381
[2025-07-28 03:08:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:36:51]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:36:51]  status=None
[2025-07-28 04:36:51]  status_code=0
[2025-07-28 04:36:51]  storage_token=
[2025-07-28 04:36:51]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748510381/log.45743349._056297.job.log.tgz.1
[2025-07-28 04:36:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/be/log.45743349._056297.job.log.tgz.1
[2025-07-28 04:36:51]  workdir=None
[2025-07-28 04:36:51] ]
[2025-07-28 04:36:51] 2025-07-28 08:36:09,691 | INFO     | transferring file log.45743349._056297.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748510381/log.45743349._056297.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 04:36:51] 2025-07-28 08:36:09,692 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748510381/log.45743349._056297.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056297.job
[2025-07-28 04:36:51] 2025-07-28 08:36:09,714 | INFO     | adding to output.list: log.45743349._056297.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b5/be/log.45743349._056297.job.log.tg
[2025-07-28 04:36:51] 2025-07-28 08:36:09,715 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 04:36:51] 2025-07-28 08:36:09,715 | INFO     | summary of transferred files:
[2025-07-28 04:36:51] 2025-07-28 08:36:09,715 | INFO     |  -- lfn=log.45743349._056297.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 04:36:51] 2025-07-28 08:36:09,715 | INFO     | stage-out finished correctly
[2025-07-28 04:36:51] 2025-07-28 08:36:10,943 | WARNING  | process 2727 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 04:36:51] 2025-07-28 08:36:10,944 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748510381/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:36:51] 2025-07-28 08:36:11,029 | INFO     | number of running child processes to parent process 2727: 1
[2025-07-28 04:36:51] 2025-07-28 08:36:11,029 | INFO     | maximum number of monitored processes: 6
[2025-07-28 04:36:51] 2025-07-28 08:36:13,134 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 04:36:51] 2025-07-28 08:36:13,532 | INFO     | monitor loop #394: job 0:6748510381 is in state 'finished'
[2025-07-28 04:36:51] 2025-07-28 08:36:13,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:36:51] 2025-07-28 08:36:13,841 | INFO     | job 6748510381 has state=finished
[2025-07-28 04:36:51] 2025-07-28 08:36:13,841 | INFO     | preparing for final server update for job 6748510381 in state='finished'
[2025-07-28 04:36:51] 2025-07-28 08:36:13,841 | INFO     | this job has now completed (state=finished)
[2025-07-28 04:36:51] 2025-07-28 08:36:13,842 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 04:36:51] 2025-07-28 08:36:13,842 | INFO     | log transfer has been attempted: DONE
[2025-07-28 04:36:51] 2025-07-28 08:36:13,842 | INFO     | job 6748510381 has finished - writing final server update
[2025-07-28 04:36:51] 2025-07-28 08:36:13,842 | INFO     | total number of processed events: 400 (read)
[2025-07-28 04:36:51] 2025-07-28 08:36:13,843 | INFO     | executing command: lscpu
[2025-07-28 04:36:51] 2025-07-28 08:36:13,871 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:36:51] 2025-07-28 08:36:16,036 | INFO     | monitor loop #395: job 0:6748510381 is in state 'finished'
[2025-07-28 04:36:51] 2025-07-28 08:36:16,036 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,539 | INFO     | monitor loop #396: job 0:6748510381 is in state 'finished'
[2025-07-28 04:36:51] 2025-07-28 08:36:18,539 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,866 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 04:36:51] 2025-07-28 08:36:18,869 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-28 04:36:51] 2025-07-28 08:36:18,871 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748510381/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,871 | INFO     | extracted standard info from prmon json
[2025-07-28 04:36:51] 2025-07-28 08:36:18,872 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:36:51] 2025-07-28 08:36:18,872 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:36:51] 2025-07-28 08:36:18,872 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:36:51] 2025-07-28 08:36:18,872 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:36:51] 2025-07-28 08:36:18,874 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:36:51] 2025-07-28 08:36:18,874 | INFO     | sum of square deviations: 152858680.0
[2025-07-28 04:36:51] 2025-07-28 08:36:18,874 | INFO     | sum of deviations: 1830070638.0000002
[2025-07-28 04:36:51] 2025-07-28 08:36:18,875 | INFO     | mean x: 1753689236.0
[2025-07-28 04:36:51] 2025-07-28 08:36:18,875 | INFO     | mean y: 2703451.9620253164
[2025-07-28 04:36:51] 2025-07-28 08:36:18,875 | INFO     | -- intersect: -20992997799.548542
[2025-07-28 04:36:51] 2025-07-28 08:36:18,875 | INFO     | intersect: -20992997799.548542
[2025-07-28 04:36:51] 2025-07-28 08:36:18,875 | INFO     | chi2: 0.06403199931525404
[2025-07-28 04:36:51] 2025-07-28 08:36:18,875 | INFO     | -- intersect: -20992997799.548542
[2025-07-28 04:36:51] 2025-07-28 08:36:18,875 | INFO     | current memory leak: 11.97 B/s (using 79 data points, chi2=0.06)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | could have reported an average CPU frequency of 2039 MHz (6 samples)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | ..............................
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | . Timing measurements:
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | . get job = 0 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | . initial setup = 3 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | . payload setup = 10 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | . stage-in = 0 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,876 | INFO     | . payload execution = 5217 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,877 | INFO     | . stage-out = 0 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,877 | INFO     | . log creation = 0 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,877 | INFO     | ..............................
[2025-07-28 04:36:51] 2025-07-28 08:36:18,960 | INFO     | 
[2025-07-28 04:36:51] 2025-07-28 08:36:18,961 | INFO     | job summary report
[2025-07-28 04:36:51] 2025-07-28 08:36:18,961 | INFO     | --------------------------------------------------
[2025-07-28 04:36:51] 2025-07-28 08:36:18,961 | INFO     | PanDA job id: 6748510381
[2025-07-28 04:36:51] 2025-07-28 08:36:18,961 | INFO     | task id: 45743349
[2025-07-28 04:36:51] 2025-07-28 08:36:18,961 | INFO     | errors: (none)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,962 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:36:51] 2025-07-28 08:36:18,962 | INFO     | pilot state: finished 
[2025-07-28 04:36:51] 2025-07-28 08:36:18,962 | INFO     | transexitcode: 0
[2025-07-28 04:36:51] 2025-07-28 08:36:18,962 | INFO     | exeerrorcode: 0
[2025-07-28 04:36:51] 2025-07-28 08:36:18,962 | INFO     | exeerrordiag: 
[2025-07-28 04:36:51] 2025-07-28 08:36:18,962 | INFO     | exitcode: 0
[2025-07-28 04:36:51] 2025-07-28 08:36:18,962 | INFO     | exitmsg: OK
[2025-07-28 04:36:51] 2025-07-28 08:36:18,963 | INFO     | cpuconsumptiontime: 55979 s
[2025-07-28 04:36:51] 2025-07-28 08:36:18,963 | INFO     | nevents: 400
[2025-07-28 04:36:51] 2025-07-28 08:36:18,963 | INFO     | neventsw: 0
[2025-07-28 04:36:51] 2025-07-28 08:36:18,963 | INFO     | pid: 2727
[2025-07-28 04:36:51] 2025-07-28 08:36:18,963 | INFO     | pgrp: 2727
[2025-07-28 04:36:51] 2025-07-28 08:36:18,963 | INFO     | corecount: 12
[2025-07-28 04:36:51] 2025-07-28 08:36:18,964 | INFO     | event service: False
[2025-07-28 04:36:51] 2025-07-28 08:36:18,964 | INFO     | sizes: {0: 2397418, 5: 2397680, 11: 2397736, 5230: 2424185, 5232: 2433183, 5235: 2433239, 5241: 2433561}
[2025-07-28 04:36:51] 2025-07-28 08:36:18,964 | INFO     | --------------------------------------------------
[2025-07-28 04:36:51] 2025-07-28 08:36:18,964 | INFO     | 
[2025-07-28 04:36:51] 2025-07-28 08:36:18,964 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 04:36:51] 2025-07-28 08:36:18,989 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,990 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,991 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,992 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,992 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,992 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:36:51] 2025-07-28 08:36:18,992 | INFO     | job 6748510381 has completed (purged errors)
[2025-07-28 04:36:51] 2025-07-28 08:36:18,992 | INFO     | overall cleanup function is called
[2025-07-28 04:36:51] 2025-07-28 08:36:19,999 | INFO     | --- collectZombieJob: --- 10, [2727]
[2025-07-28 04:36:51] 2025-07-28 08:36:19,999 | INFO     | zombie collector waiting for pid 2727
[2025-07-28 04:36:51] 2025-07-28 08:36:20,005 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:36:51] 2025-07-28 08:36:20,005 | INFO     | collected zombie processes
[2025-07-28 04:36:51] 2025-07-28 08:36:20,005 | INFO     | will attempt to kill all subprocesses of pid=2727
[2025-07-28 04:36:51] 2025-07-28 08:36:20,095 | INFO     | process IDs to be killed: [2727] (in reverse order)
[2025-07-28 04:36:51] 2025-07-28 08:36:20,148 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:36:51] 2025-07-28 08:36:20,149 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:36:51] 2025-07-28 08:36:20,153 | INFO     | did not find any defunct processes belonging to 2727
[2025-07-28 04:36:51] 2025-07-28 08:36:20,156 | INFO     | did not find any defunct processes belonging to 2727
[2025-07-28 04:36:51] 2025-07-28 08:36:20,156 | INFO     | ready for new job
[2025-07-28 04:36:51] 2025-07-28 08:36:20,157 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:36:51] 2025-07-28 08:36:20,158 | INFO     | ***************************************
[2025-07-28 04:36:51] 2025-07-28 08:36:20,158 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:36:51] 2025-07-28 08:36:20,158 | INFO     | ***************************************
[2025-07-28 04:36:51] 2025-07-28 08:36:20,159 | INFO     | 
[2025-07-28 04:36:51] 2025-07-28 08:36:20,159 | INFO     | architecture information:
[2025-07-28 04:36:51] 2025-07-28 08:36:20,160 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:36:51] 2025-07-28 08:36:20,174 | INFO     | cat /etc/os-release:
[2025-07-28 04:36:51] NAME="CentOS Linux"
[2025-07-28 04:36:51] VERSION="7 (Core)"
[2025-07-28 04:36:51] ID="centos"
[2025-07-28 04:36:51] ID_LIKE="rhel fedora"
[2025-07-28 04:36:51] VERSION_ID="7"
[2025-07-28 04:36:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:36:51] ANSI_COLOR="0;31"
[2025-07-28 04:36:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:36:51] HOME_URL="https://www.centos.org/"
[2025-07-28 04:36:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:36:51] 
[2025-07-28 04:36:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:36:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:36:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:36:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:36:51] 
[2025-07-28 04:36:51] 2025-07-28 08:36:20,174 | INFO     | ***************************************
[2025-07-28 04:36:51] 2025-07-28 08:36:20,677 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 04:36:51] 2025-07-28 08:36:20,693 | INFO     | sufficient remaining disk space (29511122944 B)
[2025-07-28 04:36:51] 2025-07-28 08:36:20,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:36:51] 2025-07-28 08:36:20,694 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:36:51] 2025-07-28 08:36:20,694 | INFO     | update_server=False
[2025-07-28 04:36:51] 2025-07-28 08:36:20,694 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:36:51] 2025-07-28 08:36:20,694 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:36:51] 2025-07-28 08:36:20,695 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:36:51] 2025-07-28 08:36:21,043 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 04:36:51] 2025-07-28 08:36:21,043 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 04:36:51] 2025-07-28 08:36:21,043 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:36:51] 2025-07-28 08:36:21,043 | INFO     | will abort loop
[2025-07-28 04:36:51] 2025-07-28 08:36:21,190 | INFO     | all data control threads have been joined
[2025-07-28 04:36:51] 2025-07-28 08:36:21,700 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:21,700 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:21,745 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:21,761 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:22,049 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:22,102 | INFO     | all payload control threads have been joined
[2025-07-28 04:36:51] 2025-07-28 08:36:22,195 | INFO     | [data] control thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:22,296 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:22,314 | INFO     | all job control threads have been joined
[2025-07-28 04:36:51] 2025-07-28 08:36:22,330 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:22,379 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:22,700 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:22,788 | INFO     | [job] validate thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:23,107 | INFO     | [payload] control thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:23,144 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:23,320 | INFO     | [job] control thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:23,724 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:36:51] 2025-07-28 08:36:27,730 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:30,870 | INFO     | job.realtimelogging is not enabled
[2025-07-28 04:36:51] 2025-07-28 08:36:31,873 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:36:51] 2025-07-28 08:36:33,845 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820056749888)>', '<ExcThread(monitor, started 139819086763776)>']
[2025-07-28 04:36:51] 2025-07-28 08:36:38,870 | INFO     | all workflow threads have been joined
[2025-07-28 04:36:51] 2025-07-28 08:36:38,870 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:36:51] 2025-07-28 08:36:38,870 | INFO     | traces error code: 0
[2025-07-28 04:36:51] 2025-07-28 08:36:38,870 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:36:51] 2025-07-28 08:36:51,245 | INFO     | PID=28561 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 04:36:51] 2025-07-28 08:36:51,246 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:36:51] 2025-07-28 08:36:51,246 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:36:51] 2025-07-28 08:36:51,246 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:36:51] 2025-07-28 08:36:51,246 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:36:51] 2025-07-28 08:36:51,246 | CRITICAL | thread 'MainThread' is not alive
[2025-07-28 04:36:51] 2025-07-28 08:36:51,246 | INFO     | [monitor] control thread has ended
[2025-07-28 04:36:51] 2025-07-28 08:36:51,335 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:36:51] 2025-07-28 08:36:51,339 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:36:51] 2025-07-28 08:36:51,343 [wrapper] pilotpid: 28561
[2025-07-28 04:36:51] 2025-07-28 08:36:51,346 [wrapper] Pilot exit status: 0
[2025-07-28 04:36:51] 2025-07-28 08:36:51,361 [wrapper] pandaids: 6748510381
[2025-07-28 04:36:51] 2025-07-28 08:36:51,401 [wrapper] cleanup supervisor_pilot 17135 28562
[2025-07-28 04:36:51] 2025-07-28 08:36:51,405 [wrapper] Test setup, not cleaning
[2025-07-28 04:36:51] 2025-07-28 08:36:51,408 [wrapper] apfmon messages muted
[2025-07-28 04:36:51] 2025-07-28 08:36:51,412 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:36:51] 2025-07-28 08:36:51,416 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:36:51]  *** Error codes and diagnostics ***
[2025-07-28 04:36:51]     "exeErrorCode": 0,
[2025-07-28 04:36:51]     "exeErrorDiag": "",
[2025-07-28 04:36:51]     "pilotErrorCode": 0,
[2025-07-28 04:36:51]     "pilotErrorDiag": "",
[2025-07-28 04:36:51]  *** Listing of results directory ***
[2025-07-28 04:36:51] total 355744
[2025-07-28 04:36:51] -rwx------ 1 boincer umatlas     36292 Jul 28 03:08 runpilot2-wrapper.sh
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 03:08 queuedata.json
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 03:08 pilot3.tar.gz
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas       100 Jul 28 03:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:36:51] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 03:08 run_atlas
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas       105 Jul 28 03:08 job.xml
[2025-07-28 04:36:51] -rw-r--r-- 2 boincer umatlas 147351083 Jul 28 03:08 EVNT.45743347._002905.pool.root.1
[2025-07-28 04:36:51] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 03:08 start_atlas.sh
[2025-07-28 04:36:51] drwxrwx--x 2 boincer umatlas      4096 Jul 28 03:08 shared
[2025-07-28 04:36:51] -rw-r--r-- 2 boincer umatlas    542887 Jul 28 03:08 input.tar.gz
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas         0 Jul 28 03:08 boinc_lockfile
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas      2559 Jul 28 03:08 pandaJob.out
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas    978460 Jul 28 03:08 agis_schedconf.cvmfs.json
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas   1593052 Jul 28 03:08 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:36:51] drwx------ 4 boincer umatlas      4096 Jul 28 03:08 pilot3
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas      5867 Jul 28 04:28 init_data.xml
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas 211360723 Jul 28 04:35 HITS.45743349._056297.pool.root.1
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas       530 Jul 28 04:36 boinc_task_state.xml
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas      1045 Jul 28 04:36 memory_monitor_summary.json
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas    355348 Jul 28 04:36 log.45743349._056297.job.log.tgz.1
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas      7843 Jul 28 04:36 heartbeat.json
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 04:36 boinc_mmap_file
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas        27 Jul 28 04:36 wrapper_checkpoint.txt
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas        95 Jul 28 04:36 pilot_heartbeat.json
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas       815 Jul 28 04:36 pilotlog.txt
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas    497475 Jul 28 04:36 log.45743349._056297.job.log.1
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas       357 Jul 28 04:36 output.list
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas       620 Jul 28 04:36 runtime_log
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas    870400 Jul 28 04:36 result.tar.gz
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas      8657 Jul 28 04:36 runtime_log.err
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas       659 Jul 28 04:36 OH9MDm08W07n9Rq4apOajLDm4fhM0noT9bVof3QYDmJD3KDmPusHJo.diag
[2025-07-28 04:36:51] -rw-r--r-- 1 boincer umatlas     21986 Jul 28 04:36 stderr.txt
[2025-07-28 04:36:51] HITS file was successfully produced:
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas 211360723 Jul 28 04:35 shared/HITS.pool.root.1
[2025-07-28 04:36:51]  *** Contents of shared directory: ***
[2025-07-28 04:36:51] total 351708
[2025-07-28 04:36:51] -rw-r--r-- 2 boincer umatlas 147351083 Jul 28 03:08 ATLAS.root_0
[2025-07-28 04:36:51] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 03:08 start_atlas.sh
[2025-07-28 04:36:51] -rw-r--r-- 2 boincer umatlas    542887 Jul 28 03:08 input.tar.gz
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas 211360723 Jul 28 04:35 HITS.pool.root.1
[2025-07-28 04:36:51] -rw------- 1 boincer umatlas    870400 Jul 28 04:36 result.tar.gz
04:36:53 (24882): run_atlas exited; CPU time 55951.414886
04:36:53 (24882): called boinc_finish(0)

</stderr_txt>
]]>

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