Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:49:45 (3432290): wrapper (7.7.26015): starting
02:49:45 (3432290): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 02:49:45] Arguments: --nthreads 12
[2025-07-28 02:49:45] Threads: 12
[2025-07-28 02:49:45] Checking for CVMFS
[2025-07-28 02:49:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 02:49:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 02:49:45] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 02:49:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 02:49:45] 2.13.0.0 1395644 19465 282224 148839 3 80 26800769 32935936 7654 16776704 1 44223976 99.621 82449317 19147 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 02:49:45] CVMFS is ok
[2025-07-28 02:49:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 02:49:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 02:49:45] Further information can be found at the LHC@home message board.
[2025-07-28 02:49:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 02:49:45] Checking for apptainer binary...
[2025-07-28 02:49:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 02:49:45] Running /usr/bin/apptainer --version
[2025-07-28 02:49:46] apptainer version 1.4.1-1.el9
[2025-07-28 02:49:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 02:49:46] c6-6-39-2.aglt2.org
[2025-07-28 02:49:46] apptainer works
[2025-07-28 02:49:46] Set ATHENA_PROC_NUMBER=12
[2025-07-28 02:49:46] Set ATHENA_CORE_NUMBER=12
[2025-07-28 02:49:46] Starting ATLAS job with PandaID=6748505558
[2025-07-28 02:49:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:00:44]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:00:44]  is_altstaged=None
[2025-07-28 04:00:44]  is_tar=False
[2025-07-28 04:00:44]  lfn=log.45743349._056291.job.log.tgz.1
[2025-07-28 04:00:44]  mtime=0
[2025-07-28 04:00:44]  protocol_id=None
[2025-07-28 04:00:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 04:00:44]  replicas=None
[2025-07-28 04:00:44]  scope=mc23_13p6TeV
[2025-07-28 04:00:44]  status=None
[2025-07-28 04:00:44]  status_code=0
[2025-07-28 04:00:44]  storage_token=
[2025-07-28 04:00:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748505558/log.45743349._056291.job.log.tgz.1
[2025-07-28 04:00:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/83/log.45743349._056291.job.log.tgz.1
[2025-07-28 04:00:44]  workdir=None
[2025-07-28 04:00:44] ]
[2025-07-28 04:00:44] 2025-07-28 08:00:07,207 | INFO     | transferring file log.45743349._056291.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748505558/log.45743349._056291.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 04:00:44] 2025-07-28 08:00:07,207 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748505558/log.45743349._056291.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056291.job
[2025-07-28 04:00:44] 2025-07-28 08:00:07,227 | INFO     | adding to output.list: log.45743349._056291.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/83/log.45743349._056291.job.log.tg
[2025-07-28 04:00:44] 2025-07-28 08:00:07,228 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 04:00:44] 2025-07-28 08:00:07,228 | INFO     | summary of transferred files:
[2025-07-28 04:00:44] 2025-07-28 08:00:07,228 | INFO     |  -- lfn=log.45743349._056291.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 04:00:44] 2025-07-28 08:00:07,228 | INFO     | stage-out finished correctly
[2025-07-28 04:00:44] 2025-07-28 08:00:07,297 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 04:00:44] 2025-07-28 08:00:07,386 | INFO     | job 6748505558 has state=finished
[2025-07-28 04:00:44] 2025-07-28 08:00:07,387 | INFO     | preparing for final server update for job 6748505558 in state='finished'
[2025-07-28 04:00:44] 2025-07-28 08:00:07,388 | INFO     | this job has now completed (state=finished)
[2025-07-28 04:00:44] 2025-07-28 08:00:07,388 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 04:00:44] 2025-07-28 08:00:07,388 | INFO     | log transfer has been attempted: DONE
[2025-07-28 04:00:44] 2025-07-28 08:00:07,388 | INFO     | job 6748505558 has finished - writing final server update
[2025-07-28 04:00:44] 2025-07-28 08:00:07,388 | INFO     | total number of processed events: 400 (read)
[2025-07-28 04:00:44] 2025-07-28 08:00:07,389 | INFO     | executing command: lscpu
[2025-07-28 04:00:44] 2025-07-28 08:00:07,444 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:00:44] 2025-07-28 08:00:08,579 | INFO     | monitor loop #314: job 0:6748505558 is in state 'finished'
[2025-07-28 04:00:44] 2025-07-28 08:00:08,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,082 | INFO     | monitor loop #315: job 0:6748505558 is in state 'finished'
[2025-07-28 04:00:44] 2025-07-28 08:00:11,082 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,859 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 04:00:44] 2025-07-28 08:00:11,862 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2713.1690535714292
[2025-07-28 04:00:44] 2025-07-28 08:00:11,871 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748505558/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,871 | INFO     | extracted standard info from prmon json
[2025-07-28 04:00:44] 2025-07-28 08:00:11,872 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:00:44] 2025-07-28 08:00:11,872 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:00:44] 2025-07-28 08:00:11,872 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:00:44] 2025-07-28 08:00:11,872 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:00:44] 2025-07-28 08:00:11,874 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:00:44] 2025-07-28 08:00:11,874 | INFO     | sum of square deviations: 73882315.5
[2025-07-28 04:00:44] 2025-07-28 08:00:11,874 | INFO     | sum of deviations: -9309109350.0
[2025-07-28 04:00:44] 2025-07-28 08:00:11,874 | INFO     | mean x: 1753687590.5
[2025-07-28 04:00:44] 2025-07-28 08:00:11,875 | INFO     | mean y: 2514533.6129032257
[2025-07-28 04:00:44] 2025-07-28 08:00:11,875 | INFO     | -- intersect: 220965669724.68866
[2025-07-28 04:00:44] 2025-07-28 08:00:11,875 | INFO     | intersect: 220965669724.68866
[2025-07-28 04:00:44] 2025-07-28 08:00:11,875 | INFO     | chi2: 0.12891417138856545
[2025-07-28 04:00:44] 2025-07-28 08:00:11,875 | INFO     | -- intersect: 220965669724.68866
[2025-07-28 04:00:44] 2025-07-28 08:00:11,875 | INFO     | current memory leak: -126.00 B/s (using 62 data points, chi2=0.13)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,875 | INFO     | could have reported an average CPU frequency of 2675 MHz (6 samples)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | ..............................
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . Timing measurements:
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . get job = 0 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . initial setup = 2 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . payload setup = 7 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . stage-in = 0 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . payload execution = 4182 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . stage-out = 0 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | . log creation = 0 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,876 | INFO     | ..............................
[2025-07-28 04:00:44] 2025-07-28 08:00:11,964 | INFO     | 
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | job summary report
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | --------------------------------------------------
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | PanDA job id: 6748505558
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | task id: 45743349
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | errors: (none)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | pilot state: finished 
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | transexitcode: 0
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | exeerrorcode: 0
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | exeerrordiag: 
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | exitcode: 0
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | exitmsg: OK
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | cpuconsumptiontime: 44815 s
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | nevents: 400
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | neventsw: 0
[2025-07-28 04:00:44] 2025-07-28 08:00:11,965 | INFO     | pid: 3452761
[2025-07-28 04:00:44] 2025-07-28 08:00:11,966 | INFO     | pgrp: 3452761
[2025-07-28 04:00:44] 2025-07-28 08:00:11,966 | INFO     | corecount: 12
[2025-07-28 04:00:44] 2025-07-28 08:00:11,966 | INFO     | event service: False
[2025-07-28 04:00:44] 2025-07-28 08:00:11,966 | INFO     | sizes: {0: 2396596, 1: 2397452, 5: 2397714, 12: 2397770, 4193: 2423637, 4194: 2432819, 4199: 2432957}
[2025-07-28 04:00:44] 2025-07-28 08:00:11,966 | INFO     | --------------------------------------------------
[2025-07-28 04:00:44] 2025-07-28 08:00:11,966 | INFO     | 
[2025-07-28 04:00:44] 2025-07-28 08:00:11,966 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 04:00:44] 2025-07-28 08:00:11,987 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,988 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,989 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,989 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,989 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,989 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,989 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:00:44] 2025-07-28 08:00:11,989 | INFO     | job 6748505558 has completed (purged errors)
[2025-07-28 04:00:44] 2025-07-28 08:00:11,989 | INFO     | overall cleanup function is called
[2025-07-28 04:00:44] 2025-07-28 08:00:12,996 | INFO     | --- collectZombieJob: --- 10, [3452761]
[2025-07-28 04:00:44] 2025-07-28 08:00:12,997 | INFO     | zombie collector waiting for pid 3452761
[2025-07-28 04:00:44] 2025-07-28 08:00:12,997 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:00:44] 2025-07-28 08:00:12,997 | INFO     | collected zombie processes
[2025-07-28 04:00:44] 2025-07-28 08:00:12,997 | INFO     | will attempt to kill all subprocesses of pid=3452761
[2025-07-28 04:00:44] 2025-07-28 08:00:13,253 | INFO     | process IDs to be killed: [3452761] (in reverse order)
[2025-07-28 04:00:44] 2025-07-28 08:00:13,341 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:00:44] 2025-07-28 08:00:13,342 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:00:44] 2025-07-28 08:00:13,359 | INFO     | did not find any defunct processes belonging to 3452761
[2025-07-28 04:00:44] 2025-07-28 08:00:13,374 | INFO     | did not find any defunct processes belonging to 3452761
[2025-07-28 04:00:44] 2025-07-28 08:00:13,375 | INFO     | ready for new job
[2025-07-28 04:00:44] 2025-07-28 08:00:13,375 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:00:44] 2025-07-28 08:00:13,378 | INFO     | ***************************************
[2025-07-28 04:00:44] 2025-07-28 08:00:13,378 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:00:44] 2025-07-28 08:00:13,378 | INFO     | ***************************************
[2025-07-28 04:00:44] 2025-07-28 08:00:13,378 | INFO     | 
[2025-07-28 04:00:44] 2025-07-28 08:00:13,394 | INFO     | architecture information:
[2025-07-28 04:00:44] 2025-07-28 08:00:13,394 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:00:44] 2025-07-28 08:00:13,411 | INFO     | cat /etc/os-release:
[2025-07-28 04:00:44] NAME="CentOS Linux"
[2025-07-28 04:00:44] VERSION="7 (Core)"
[2025-07-28 04:00:44] ID="centos"
[2025-07-28 04:00:44] ID_LIKE="rhel fedora"
[2025-07-28 04:00:44] VERSION_ID="7"
[2025-07-28 04:00:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:00:44] ANSI_COLOR="0;31"
[2025-07-28 04:00:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:00:44] HOME_URL="https://www.centos.org/"
[2025-07-28 04:00:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:00:44] 
[2025-07-28 04:00:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:00:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:00:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:00:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:00:44] 
[2025-07-28 04:00:44] 2025-07-28 08:00:13,411 | INFO     | ***************************************
[2025-07-28 04:00:44] 2025-07-28 08:00:13,914 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 04:00:44] 2025-07-28 08:00:13,930 | INFO     | sufficient remaining disk space (74104963072 B)
[2025-07-28 04:00:44] 2025-07-28 08:00:13,930 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:00:44] 2025-07-28 08:00:13,931 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:00:44] 2025-07-28 08:00:13,931 | INFO     | update_server=False
[2025-07-28 04:00:44] 2025-07-28 08:00:13,931 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:00:44] 2025-07-28 08:00:13,931 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:00:44] 2025-07-28 08:00:13,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:00:44] 2025-07-28 08:00:14,181 | INFO     | all data control threads have been joined
[2025-07-28 04:00:44] 2025-07-28 08:00:14,524 | INFO     | all payload control threads have been joined
[2025-07-28 04:00:44] 2025-07-28 08:00:14,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:00:44] 2025-07-28 08:00:14,591 | INFO     | aborting loop
[2025-07-28 04:00:44] 2025-07-28 08:00:14,936 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:14,936 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,028 | INFO     | all job control threads have been joined
[2025-07-28 04:00:44] 2025-07-28 08:00:15,186 | INFO     | [data] control thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,302 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,305 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:00:44] 2025-07-28 08:00:15,529 | INFO     | [payload] control thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,593 | INFO     | [job] validate thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,595 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,730 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,907 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,987 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:15,992 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:16,033 | INFO     | [job] control thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:16,261 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:17,310 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:17,937 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:24,907 | INFO     | job.realtimelogging is not enabled
[2025-07-28 04:00:44] 2025-07-28 08:00:25,912 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:00:44] 2025-07-28 08:00:27,602 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140616259196736)>', '<ExcThread(monitor, started 140615903844096)>']
[2025-07-28 04:00:44] 2025-07-28 08:00:32,627 | INFO     | all workflow threads have been joined
[2025-07-28 04:00:44] 2025-07-28 08:00:32,628 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:00:44] 2025-07-28 08:00:32,628 | INFO     | traces error code: 0
[2025-07-28 04:00:44] 2025-07-28 08:00:32,628 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:00:44] 2025-07-28 08:00:44,066 | INFO     | PID=3439143 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 04:00:44] 2025-07-28 08:00:44,067 | INFO     | .. there are 13 such processes running
[2025-07-28 04:00:44] 2025-07-28 08:00:44,068 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:00:44] 2025-07-28 08:00:44,068 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:00:44] 2025-07-28 08:00:44,068 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:00:44] 2025-07-28 08:00:44,068 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:00:44] 2025-07-28 08:00:44,068 | INFO     | [monitor] control thread has ended
[2025-07-28 04:00:44] 2025-07-28 08:00:44,218 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:00:44] 2025-07-28 08:00:44,221 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:00:44] 2025-07-28 08:00:44,225 [wrapper] pilotpid: 3439143
[2025-07-28 04:00:44] 2025-07-28 08:00:44,228 [wrapper] Pilot exit status: 0
[2025-07-28 04:00:44] 2025-07-28 08:00:44,240 [wrapper] pandaids: 6748505558
[2025-07-28 04:00:44] 2025-07-28 08:00:44,319 [wrapper] cleanup supervisor_pilot 3711128 3439144
[2025-07-28 04:00:44] 2025-07-28 08:00:44,323 [wrapper] Test setup, not cleaning
[2025-07-28 04:00:44] 2025-07-28 08:00:44,326 [wrapper] apfmon messages muted
[2025-07-28 04:00:44] 2025-07-28 08:00:44,329 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:00:44] 2025-07-28 08:00:44,333 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:00:44]  *** Error codes and diagnostics ***
[2025-07-28 04:00:44]     "exeErrorCode": 0,
[2025-07-28 04:00:44]     "exeErrorDiag": "",
[2025-07-28 04:00:44]     "pilotErrorCode": 0,
[2025-07-28 04:00:44]     "pilotErrorDiag": "",
[2025-07-28 04:00:44]  *** Listing of results directory ***
[2025-07-28 04:00:44] total 392420
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 02:33 pilot3.tar.gz
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 02:47 queuedata.json
[2025-07-28 04:00:44] -rwx------. 1 boincer umatlas     36292 Jul 28 02:49 runpilot2-wrapper.sh
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas       100 Jul 28 02:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:00:44] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 02:49 run_atlas
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas       105 Jul 28 02:49 job.xml
[2025-07-28 04:00:44] -rw-r--r--. 2 boincer umatlas 189108485 Jul 28 02:49 EVNT.45743347._002594.pool.root.1
[2025-07-28 04:00:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 02:49 start_atlas.sh
[2025-07-28 04:00:44] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 02:49 shared
[2025-07-28 04:00:44] -rw-r--r--. 2 boincer umatlas    542901 Jul 28 02:49 input.tar.gz
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas         0 Jul 28 02:49 boinc_lockfile
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 02:49 pandaJob.out
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas    978460 Jul 28 02:49 agis_schedconf.cvmfs.json
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas   1593052 Jul 28 02:49 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:00:44] drwx------. 4 boincer umatlas      4096 Jul 28 02:49 pilot3
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas      6840 Jul 28 03:54 init_data.xml
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas       529 Jul 28 03:59 boinc_task_state.xml
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas 207301990 Jul 28 03:59 HITS.45743349._056291.pool.root.1
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas      1041 Jul 28 04:00 memory_monitor_summary.json
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas    352239 Jul 28 04:00 log.45743349._056291.job.log.tgz.1
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas      7831 Jul 28 04:00 heartbeat.json
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 04:00 boinc_mmap_file
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas        27 Jul 28 04:00 wrapper_checkpoint.txt
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas       823 Jul 28 04:00 pilotlog.txt
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas        95 Jul 28 04:00 pilot_heartbeat.json
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas    426047 Jul 28 04:00 log.45743349._056291.job.log.1
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas       357 Jul 28 04:00 output.list
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas       620 Jul 28 04:00 runtime_log
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas    798720 Jul 28 04:00 result.tar.gz
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 04:00 runtime_log.err
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas       654 Jul 28 04:00 2w2LDmwqW07n9Rq4apOajLDm4fhM0noT9bVof3QYDmGD3KDmbFKzdm.diag
[2025-07-28 04:00:44] -rw-r--r--. 1 boincer umatlas     21480 Jul 28 04:00 stderr.txt
[2025-07-28 04:00:44] HITS file was successfully produced:
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas 207301990 Jul 28 03:59 shared/HITS.pool.root.1
[2025-07-28 04:00:44]  *** Contents of shared directory: ***
[2025-07-28 04:00:44] total 388456
[2025-07-28 04:00:44] -rw-r--r--. 2 boincer umatlas 189108485 Jul 28 02:49 ATLAS.root_0
[2025-07-28 04:00:44] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 02:49 start_atlas.sh
[2025-07-28 04:00:44] -rw-r--r--. 2 boincer umatlas    542901 Jul 28 02:49 input.tar.gz
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas 207301990 Jul 28 03:59 HITS.pool.root.1
[2025-07-28 04:00:44] -rw-------. 1 boincer umatlas    798720 Jul 28 04:00 result.tar.gz
04:00:45 (3432290): run_atlas exited; CPU time 44852.680393
04:00:45 (3432290): called boinc_finish(0)

</stderr_txt>
]]>

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