Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:47:37 (755800): wrapper (7.7.26015): starting
02:47:37 (755800): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 02:47:37] Arguments: --nthreads 8
[2025-07-28 02:47:37] Threads: 8
[2025-07-28 02:47:37] Checking for CVMFS
[2025-07-28 02:47:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 02:47:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 02:47:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 02:47:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 02:47:38] 2.13.1.0 1602499 14028 226600 148839 1 544 28559116 40960000 13616 16776704 0 81671821 99.751 80152062 35747 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 02:47:38] CVMFS is ok
[2025-07-28 02:47:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 02:47:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 02:47:38] Further information can be found at the LHC@home message board.
[2025-07-28 02:47:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 02:47:38] Checking for apptainer binary...
[2025-07-28 02:47:38] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 02:47:38] Running /usr/bin/apptainer --version
[2025-07-28 02:47:38] apptainer version 1.4.1-1.el9
[2025-07-28 02:47:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 02:47:38] c-212-17.aglt2.org
[2025-07-28 02:47:38] apptainer works
[2025-07-28 02:47:38] Set ATHENA_PROC_NUMBER=8
[2025-07-28 02:47:38] Set ATHENA_CORE_NUMBER=8
[2025-07-28 02:47:38] Starting ATLAS job with PandaID=6748504223
[2025-07-28 02:47:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 04:06:30]  *** The last 200 lines of the pilot log: ***
[2025-07-28 04:06:30]  replicas=None
[2025-07-28 04:06:30]  scope=mc23_13p6TeV
[2025-07-28 04:06:30]  status=None
[2025-07-28 04:06:30]  status_code=0
[2025-07-28 04:06:30]  storage_token=
[2025-07-28 04:06:30]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748504223/log.45743349._056288.job.log.tgz.1
[2025-07-28 04:06:30]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/fb/log.45743349._056288.job.log.tgz.1
[2025-07-28 04:06:30]  workdir=None
[2025-07-28 04:06:30] ]
[2025-07-28 04:06:30] 2025-07-28 08:05:51,759 | INFO     | transferring file log.45743349._056288.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748504223/log.45743349._056288.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 04:06:30] 2025-07-28 08:05:51,759 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748504223/log.45743349._056288.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056288.job
[2025-07-28 04:06:30] 2025-07-28 08:05:51,778 | INFO     | adding to output.list: log.45743349._056288.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/49/fb/log.45743349._056288.job.log.tg
[2025-07-28 04:06:30] 2025-07-28 08:05:51,779 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 04:06:30] 2025-07-28 08:05:51,779 | INFO     | summary of transferred files:
[2025-07-28 04:06:30] 2025-07-28 08:05:51,779 | INFO     |  -- lfn=log.45743349._056288.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 04:06:30] 2025-07-28 08:05:51,779 | INFO     | stage-out finished correctly
[2025-07-28 04:06:30] 2025-07-28 08:05:51,976 | WARNING  | process 777870 can no longer be monitored (due to stat problems) - aborting
[2025-07-28 04:06:30] 2025-07-28 08:05:51,976 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748504223/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:06:30] 2025-07-28 08:05:52,267 | INFO     | number of running child processes to parent process 777870: 1
[2025-07-28 04:06:30] 2025-07-28 08:05:52,268 | INFO     | maximum number of monitored processes: 6
[2025-07-28 04:06:30] 2025-07-28 08:05:53,472 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 04:06:30] 2025-07-28 08:05:53,602 | INFO     | job 6748504223 has state=finished
[2025-07-28 04:06:30] 2025-07-28 08:05:53,602 | INFO     | preparing for final server update for job 6748504223 in state='finished'
[2025-07-28 04:06:30] 2025-07-28 08:05:53,602 | INFO     | this job has now completed (state=finished)
[2025-07-28 04:06:30] 2025-07-28 08:05:53,602 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 04:06:30] 2025-07-28 08:05:53,602 | INFO     | log transfer has been attempted: DONE
[2025-07-28 04:06:30] 2025-07-28 08:05:53,602 | INFO     | job 6748504223 has finished - writing final server update
[2025-07-28 04:06:30] 2025-07-28 08:05:53,603 | INFO     | total number of processed events: 400 (read)
[2025-07-28 04:06:30] 2025-07-28 08:05:53,603 | INFO     | executing command: lscpu
[2025-07-28 04:06:30] 2025-07-28 08:05:53,657 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 04:06:30] 2025-07-28 08:05:54,471 | INFO     | 4685s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 04:06:30] 2025-07-28 08:05:54,771 | INFO     | monitor loop #344: job 0:6748504223 is in state 'finished'
[2025-07-28 04:06:30] 2025-07-28 08:05:54,771 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,263 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 04:06:30] 2025-07-28 08:05:57,271 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3289.439072916666
[2025-07-28 04:06:30] 2025-07-28 08:05:57,274 | INFO     | monitor loop #345: job 0:6748504223 is in state 'finished'
[2025-07-28 04:06:30] 2025-07-28 08:05:57,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,279 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748504223/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,280 | INFO     | extracted standard info from prmon json
[2025-07-28 04:06:30] 2025-07-28 08:05:57,280 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 04:06:30] 2025-07-28 08:05:57,280 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 04:06:30] 2025-07-28 08:05:57,280 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 04:06:30] 2025-07-28 08:05:57,280 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | fitting pss+swap vs Time
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | sum of square deviations: 106336877.5
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | sum of deviations: -12989134704.5
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | mean x: 1753687713.5
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | mean y: 2714798.0142857144
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | -- intersect: 214217072749.96848
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | intersect: 214217072749.96848
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | chi2: 0.12438543651353356
[2025-07-28 04:06:30] 2025-07-28 08:05:57,282 | INFO     | -- intersect: 214217072749.96848
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | current memory leak: -122.15 B/s (using 70 data points, chi2=0.12)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | could have reported an average CPU frequency of 3138 MHz (6 samples)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | ..............................
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . Timing measurements:
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . get job = 0 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . initial setup = 2 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . payload setup = 9 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . stage-in = 0 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . payload execution = 4650 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . stage-out = 0 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,283 | INFO     | . log creation = 0 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,284 | INFO     | ..............................
[2025-07-28 04:06:30] 2025-07-28 08:05:57,490 | INFO     | 
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | job summary report
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | --------------------------------------------------
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | PanDA job id: 6748504223
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | task id: 45743349
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | errors: (none)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | pilot state: finished 
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | transexitcode: 0
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | exeerrorcode: 0
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | exeerrordiag: 
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | exitcode: 0
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | exitmsg: OK
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | cpuconsumptiontime: 35053 s
[2025-07-28 04:06:30] 2025-07-28 08:05:57,491 | INFO     | nevents: 400
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | neventsw: 0
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | pid: 777870
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | pgrp: 777870
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | corecount: 8
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | event service: False
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | sizes: {0: 2397374, 6: 2397636, 11: 2397664, 4662: 2423770, 4663: 2432768, 4664: 2432824, 4668: 2433146}
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | --------------------------------------------------
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | 
[2025-07-28 04:06:30] 2025-07-28 08:05:57,492 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,505 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | job 6748504223 has completed (purged errors)
[2025-07-28 04:06:30] 2025-07-28 08:05:57,506 | INFO     | overall cleanup function is called
[2025-07-28 04:06:30] 2025-07-28 08:05:58,513 | INFO     | --- collectZombieJob: --- 10, [777870]
[2025-07-28 04:06:30] 2025-07-28 08:05:58,514 | INFO     | zombie collector waiting for pid 777870
[2025-07-28 04:06:30] 2025-07-28 08:05:58,514 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 04:06:30] 2025-07-28 08:05:58,514 | INFO     | collected zombie processes
[2025-07-28 04:06:30] 2025-07-28 08:05:58,514 | INFO     | will attempt to kill all subprocesses of pid=777870
[2025-07-28 04:06:30] 2025-07-28 08:05:58,816 | INFO     | process IDs to be killed: [777870] (in reverse order)
[2025-07-28 04:06:30] 2025-07-28 08:05:58,909 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 04:06:30] 2025-07-28 08:05:58,910 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 04:06:30] 2025-07-28 08:05:58,921 | INFO     | did not find any defunct processes belonging to 777870
[2025-07-28 04:06:30] 2025-07-28 08:05:58,932 | INFO     | did not find any defunct processes belonging to 777870
[2025-07-28 04:06:30] 2025-07-28 08:05:58,932 | INFO     | ready for new job
[2025-07-28 04:06:30] 2025-07-28 08:05:58,932 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 04:06:30] 2025-07-28 08:05:58,933 | INFO     | ***************************************
[2025-07-28 04:06:30] 2025-07-28 08:05:58,933 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 04:06:30] 2025-07-28 08:05:58,933 | INFO     | ***************************************
[2025-07-28 04:06:30] 2025-07-28 08:05:58,933 | INFO     | 
[2025-07-28 04:06:30] 2025-07-28 08:05:58,937 | INFO     | architecture information:
[2025-07-28 04:06:30] 2025-07-28 08:05:58,937 | INFO     | executing command: cat /etc/os-release
[2025-07-28 04:06:30] 2025-07-28 08:05:58,952 | INFO     | cat /etc/os-release:
[2025-07-28 04:06:30] NAME="CentOS Linux"
[2025-07-28 04:06:30] VERSION="7 (Core)"
[2025-07-28 04:06:30] ID="centos"
[2025-07-28 04:06:30] ID_LIKE="rhel fedora"
[2025-07-28 04:06:30] VERSION_ID="7"
[2025-07-28 04:06:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 04:06:30] ANSI_COLOR="0;31"
[2025-07-28 04:06:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 04:06:30] HOME_URL="https://www.centos.org/"
[2025-07-28 04:06:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 04:06:30] 
[2025-07-28 04:06:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 04:06:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 04:06:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 04:06:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 04:06:30] 
[2025-07-28 04:06:30] 2025-07-28 08:05:58,952 | INFO     | ***************************************
[2025-07-28 04:06:30] 2025-07-28 08:05:59,455 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 04:06:30] 2025-07-28 08:05:59,475 | INFO     | sufficient remaining disk space (129988820992 B)
[2025-07-28 04:06:30] 2025-07-28 08:05:59,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 04:06:30] 2025-07-28 08:05:59,475 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 04:06:30] 2025-07-28 08:05:59,476 | INFO     | update_server=False
[2025-07-28 04:06:30] 2025-07-28 08:05:59,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 04:06:30] 2025-07-28 08:05:59,548 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 04:06:30] 2025-07-28 08:05:59,776 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-07-28 04:06:30] 2025-07-28 08:05:59,777 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-07-28 04:06:30] 2025-07-28 08:05:59,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:06:30] 2025-07-28 08:05:59,777 | INFO     | will abort loop
[2025-07-28 04:06:30] 2025-07-28 08:05:59,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 04:06:30] 2025-07-28 08:05:59,945 | INFO     | all payload control threads have been joined
[2025-07-28 04:06:30] 2025-07-28 08:06:00,050 | INFO     | all data control threads have been joined
[2025-07-28 04:06:30] 2025-07-28 08:06:00,465 | INFO     | all job control threads have been joined
[2025-07-28 04:06:30] 2025-07-28 08:06:00,481 | INFO     | [job] retrieve thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:00,503 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:00,782 | INFO     | [job] job monitor thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:00,951 | INFO     | [payload] control thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,056 | INFO     | [data] control thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,070 | INFO     | [payload] failed_post thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,109 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,186 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,471 | INFO     | [job] control thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,622 | INFO     | [job] validate thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,800 | INFO     | [payload] validate_post thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,823 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,849 | INFO     | [data] copytool_out thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:01,906 | INFO     | [data] copytool_in thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:02,363 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 04:06:30] 2025-07-28 08:06:03,368 | INFO     | [job] queue monitor thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:03,552 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 04:06:30] 2025-07-28 08:06:05,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139844221974336)>', '<ExcThread(monitor, started 139843948484352)>']
[2025-07-28 04:06:30] 2025-07-28 08:06:10,361 | INFO     | all workflow threads have been joined
[2025-07-28 04:06:30] 2025-07-28 08:06:10,361 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 04:06:30] 2025-07-28 08:06:10,362 | INFO     | traces error code: 0
[2025-07-28 04:06:30] 2025-07-28 08:06:10,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 04:06:30] 2025-07-28 08:06:29,955 | INFO     | PID=760018 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 04:06:30] 2025-07-28 08:06:29,955 | INFO     | .. there are 19 such processes running
[2025-07-28 04:06:30] 2025-07-28 08:06:29,955 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 04:06:30] 2025-07-28 08:06:29,955 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 04:06:30] 2025-07-28 08:06:29,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 04:06:30] 2025-07-28 08:06:29,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 04:06:30] 2025-07-28 08:06:29,956 | INFO     | [monitor] control thread has ended
[2025-07-28 04:06:30] 2025-07-28 08:06:30,094 [wrapper] ==== pilot stdout END ====
[2025-07-28 04:06:30] 2025-07-28 08:06:30,096 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 04:06:30] 2025-07-28 08:06:30,099 [wrapper] pilotpid: 760018
[2025-07-28 04:06:30] 2025-07-28 08:06:30,101 [wrapper] Pilot exit status: 0
[2025-07-28 04:06:30] 2025-07-28 08:06:30,112 [wrapper] pandaids: 6748504223
[2025-07-28 04:06:30] 2025-07-28 08:06:30,183 [wrapper] cleanup supervisor_pilot 1418809 760019
[2025-07-28 04:06:30] 2025-07-28 08:06:30,185 [wrapper] Test setup, not cleaning
[2025-07-28 04:06:30] 2025-07-28 08:06:30,188 [wrapper] apfmon messages muted
[2025-07-28 04:06:30] 2025-07-28 08:06:30,191 [wrapper] ==== wrapper stdout END ====
[2025-07-28 04:06:30] 2025-07-28 08:06:30,193 [wrapper] ==== wrapper stderr END ====
[2025-07-28 04:06:30]  *** Error codes and diagnostics ***
[2025-07-28 04:06:30]     "exeErrorCode": 0,
[2025-07-28 04:06:30]     "exeErrorDiag": "",
[2025-07-28 04:06:30]     "pilotErrorCode": 0,
[2025-07-28 04:06:30]     "pilotErrorDiag": "",
[2025-07-28 04:06:30]  *** Listing of results directory ***
[2025-07-28 04:06:30] total 352416
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 02:33 pilot3.tar.gz
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 02:44 queuedata.json
[2025-07-28 04:06:30] -rwx------. 1 boincer umatlas     36292 Jul 28 02:47 runpilot2-wrapper.sh
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas       100 Jul 28 02:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 04:06:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 02:47 run_atlas
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas       105 Jul 28 02:47 job.xml
[2025-07-28 04:06:30] -rw-r--r--. 2 boincer umatlas 143820758 Jul 28 02:47 EVNT.45743347._002566.pool.root.1
[2025-07-28 04:06:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 02:47 start_atlas.sh
[2025-07-28 04:06:30] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 02:47 shared
[2025-07-28 04:06:30] -rw-r--r--. 2 boincer umatlas    542894 Jul 28 02:47 input.tar.gz
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas         0 Jul 28 02:47 boinc_lockfile
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas      2562 Jul 28 02:47 pandaJob.out
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas    978460 Jul 28 02:47 agis_schedconf.cvmfs.json
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas   1593052 Jul 28 02:47 agis_ddmendpoints.agis.ALL.json
[2025-07-28 04:06:30] drwx------. 4 boincer umatlas      4096 Jul 28 02:47 pilot3
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas      6943 Jul 28 04:03 init_data.xml
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas 211647440 Jul 28 04:05 HITS.45743349._056288.pool.root.1
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas       529 Jul 28 04:05 boinc_task_state.xml
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas      1030 Jul 28 04:05 memory_monitor_summary.json
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas    306221 Jul 28 04:05 log.45743349._056288.job.log.tgz.1
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas      7772 Jul 28 04:05 heartbeat.json
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas        95 Jul 28 04:06 pilot_heartbeat.json
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas       822 Jul 28 04:06 pilotlog.txt
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 04:06 boinc_mmap_file
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas        27 Jul 28 04:06 wrapper_checkpoint.txt
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas    461582 Jul 28 04:06 log.45743349._056288.job.log.1
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas       357 Jul 28 04:06 output.list
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas       620 Jul 28 04:06 runtime_log
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas    788480 Jul 28 04:06 result.tar.gz
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas       654 Jul 28 04:06 YaVKDmpoW07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm8bWLDmYoXiim.diag
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 04:06 runtime_log.err
[2025-07-28 04:06:30] -rw-r--r--. 1 boincer umatlas     21898 Jul 28 04:06 stderr.txt
[2025-07-28 04:06:30] HITS file was successfully produced:
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas 211647440 Jul 28 04:05 shared/HITS.pool.root.1
[2025-07-28 04:06:30]  *** Contents of shared directory: ***
[2025-07-28 04:06:30] total 348464
[2025-07-28 04:06:30] -rw-r--r--. 2 boincer umatlas 143820758 Jul 28 02:47 ATLAS.root_0
[2025-07-28 04:06:30] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 02:47 start_atlas.sh
[2025-07-28 04:06:30] -rw-r--r--. 2 boincer umatlas    542894 Jul 28 02:47 input.tar.gz
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas 211647440 Jul 28 04:05 HITS.pool.root.1
[2025-07-28 04:06:30] -rw-------. 1 boincer umatlas    788480 Jul 28 04:06 result.tar.gz
04:06:32 (755800): run_atlas exited; CPU time 35190.690777
04:06:32 (755800): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN