Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
03:43:34 (3814796): wrapper (7.7.26015): starting
03:43:34 (3814796): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 03:43:34] Arguments: --nthreads 12
[2025-07-28 03:43:34] Threads: 12
[2025-07-28 03:43:34] Checking for CVMFS
[2025-07-28 03:43:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 03:43:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 03:43:34] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 03:43:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 03:43:35] 2.13.0.0 633399 19518 312652 148840 1 65 31394741 32935937 7826 16776704 1 38219686 99.548 81196659 30927 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-07-28 03:43:35] CVMFS is ok
[2025-07-28 03:43:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 03:43:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 03:43:35] Further information can be found at the LHC@home message board.
[2025-07-28 03:43:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 03:43:35] Checking for apptainer binary...
[2025-07-28 03:43:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 03:43:35] Running /usr/bin/apptainer --version
[2025-07-28 03:43:35] apptainer version 1.4.1-1.el9
[2025-07-28 03:43:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 03:43:35] c6-6-39-1.aglt2.org
[2025-07-28 03:43:35] apptainer works
[2025-07-28 03:43:35] Set ATHENA_PROC_NUMBER=12
[2025-07-28 03:43:35] Set ATHENA_CORE_NUMBER=12
[2025-07-28 03:43:35] Starting ATLAS job with PandaID=6745919276
[2025-07-28 03:43:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 05:19:05]  *** The last 200 lines of the pilot log: ***
[2025-07-28 05:19:05]  status=None
[2025-07-28 05:19:05]  status_code=0
[2025-07-28 05:19:05]  storage_token=
[2025-07-28 05:19:05]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6745919276/log.45759065._000007.job.log.tgz.1
[2025-07-28 05:19:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/21/log.45759065._000007.job.log.tgz.1
[2025-07-28 05:19:05]  workdir=None
[2025-07-28 05:19:05] ]
[2025-07-28 05:19:05] 2025-07-28 09:18:21,882 | INFO     | transferring file log.45759065._000007.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6745919276/log.45759065._000007.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 05:19:05] 2025-07-28 09:18:21,882 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6745919276/log.45759065._000007.job.log.tgz.1 /tmp/boinchome/slots/0/log.45759065._000007.job
[2025-07-28 05:19:05] 2025-07-28 09:18:21,901 | INFO     | adding to output.list: log.45759065._000007.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/21/log.45759065._000007.job.log.tg
[2025-07-28 05:19:05] 2025-07-28 09:18:21,902 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 05:19:05] 2025-07-28 09:18:21,902 | INFO     | summary of transferred files:
[2025-07-28 05:19:05] 2025-07-28 09:18:21,902 | INFO     |  -- lfn=log.45759065._000007.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 05:19:05] 2025-07-28 09:18:21,902 | INFO     | stage-out finished correctly
[2025-07-28 05:19:05] 2025-07-28 09:18:22,882 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 05:19:05] 2025-07-28 09:18:23,570 | INFO     | monitor loop #412: job 0:6745919276 is in state 'finished'
[2025-07-28 05:19:05] 2025-07-28 09:18:23,570 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:19:05] 2025-07-28 09:18:25,888 | INFO     | job 6745919276 has state=finished
[2025-07-28 05:19:05] 2025-07-28 09:18:25,889 | INFO     | preparing for final server update for job 6745919276 in state='finished'
[2025-07-28 05:19:05] 2025-07-28 09:18:25,957 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 05:19:05] 2025-07-28 09:18:25,958 | INFO     | this job has now completed (state=finished)
[2025-07-28 05:19:05] 2025-07-28 09:18:25,958 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 05:19:05] 2025-07-28 09:18:25,958 | INFO     | log transfer has been attempted: DONE
[2025-07-28 05:19:05] 2025-07-28 09:18:25,958 | INFO     | job 6745919276 has finished - writing final server update
[2025-07-28 05:19:05] 2025-07-28 09:18:25,959 | INFO     | total number of processed events: 400 (read)
[2025-07-28 05:19:05] 2025-07-28 09:18:25,959 | INFO     | executing command: lscpu
[2025-07-28 05:19:05] 2025-07-28 09:18:26,024 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 05:19:05] 2025-07-28 09:18:26,074 | INFO     | monitor loop #413: job 0:6745919276 is in state 'finished'
[2025-07-28 05:19:05] 2025-07-28 09:18:26,075 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:19:05] 2025-07-28 09:18:28,578 | INFO     | monitor loop #414: job 0:6745919276 is in state 'finished'
[2025-07-28 05:19:05] 2025-07-28 09:18:28,579 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,082 | INFO     | monitor loop #415: job 0:6745919276 is in state 'finished'
[2025-07-28 05:19:05] 2025-07-28 09:18:31,082 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,533 | INFO     | CPU arch script returned: x86-64-v4
[2025-07-28 05:19:05] 2025-07-28 09:18:31,556 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2805.9226249999997
[2025-07-28 05:19:05] 2025-07-28 09:18:31,580 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6745919276/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,581 | INFO     | extracted standard info from prmon json
[2025-07-28 05:19:05] 2025-07-28 09:18:31,581 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 05:19:05] 2025-07-28 09:18:31,581 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 05:19:05] 2025-07-28 09:18:31,582 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 05:19:05] 2025-07-28 09:18:31,582 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 05:19:05] 2025-07-28 09:18:31,584 | INFO     | fitting pss+swap vs Time
[2025-07-28 05:19:05] 2025-07-28 09:18:31,585 | INFO     | sum of square deviations: 197203697.5
[2025-07-28 05:19:05] 2025-07-28 09:18:31,585 | INFO     | sum of deviations: -14068655608.500008
[2025-07-28 05:19:05] 2025-07-28 09:18:31,586 | INFO     | mean x: 1753691556.5
[2025-07-28 05:19:05] 2025-07-28 09:18:31,586 | INFO     | mean y: 2483298.61627907
[2025-07-28 05:19:05] 2025-07-28 09:18:31,586 | INFO     | -- intersect: 125112117979.44083
[2025-07-28 05:19:05] 2025-07-28 09:18:31,586 | INFO     | intersect: 125112117979.44083
[2025-07-28 05:19:05] 2025-07-28 09:18:31,586 | INFO     | chi2: 0.26140555996811954
[2025-07-28 05:19:05] 2025-07-28 09:18:31,586 | INFO     | -- intersect: 125112117979.44083
[2025-07-28 05:19:05] 2025-07-28 09:18:31,587 | INFO     | current memory leak: -71.34 B/s (using 86 data points, chi2=0.26)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,587 | INFO     | could have reported an average CPU frequency of 2794 MHz (7 samples)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | ..............................
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | . Timing measurements:
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | . get job = 0 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | . initial setup = 2 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | . payload setup = 8 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | . stage-in = 0 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | . payload execution = 5643 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,588 | INFO     | . stage-out = 0 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,589 | INFO     | . log creation = 0 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,589 | INFO     | ..............................
[2025-07-28 05:19:05] 2025-07-28 09:18:31,715 | INFO     | 
[2025-07-28 05:19:05] 2025-07-28 09:18:31,715 | INFO     | job summary report
[2025-07-28 05:19:05] 2025-07-28 09:18:31,715 | INFO     | --------------------------------------------------
[2025-07-28 05:19:05] 2025-07-28 09:18:31,715 | INFO     | PanDA job id: 6745919276
[2025-07-28 05:19:05] 2025-07-28 09:18:31,715 | INFO     | task id: 45759065
[2025-07-28 05:19:05] 2025-07-28 09:18:31,715 | INFO     | errors: (none)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | pilot state: finished 
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | transexitcode: 0
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | exeerrorcode: 0
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | exeerrordiag: 
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | exitcode: 0
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | exitmsg: OK
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | cpuconsumptiontime: 59584 s
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | nevents: 400
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | neventsw: 0
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | pid: 3825722
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | pgrp: 3825722
[2025-07-28 05:19:05] 2025-07-28 09:18:31,716 | INFO     | corecount: 12
[2025-07-28 05:19:05] 2025-07-28 09:18:31,717 | INFO     | event service: False
[2025-07-28 05:19:05] 2025-07-28 09:18:31,717 | INFO     | sizes: {0: 2396629, 1: 2397485, 6: 2397747, 12: 2397775, 5655: 2424328, 5657: 2433326, 5658: 2433510, 5667: 2433704}
[2025-07-28 05:19:05] 2025-07-28 09:18:31,717 | INFO     | --------------------------------------------------
[2025-07-28 05:19:05] 2025-07-28 09:18:31,717 | INFO     | 
[2025-07-28 05:19:05] 2025-07-28 09:18:31,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 05:19:05] 2025-07-28 09:18:31,741 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,742 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 05:19:05] 2025-07-28 09:18:31,743 | INFO     | job 6745919276 has completed (purged errors)
[2025-07-28 05:19:05] 2025-07-28 09:18:31,744 | INFO     | overall cleanup function is called
[2025-07-28 05:19:05] 2025-07-28 09:18:32,429 | INFO     | PID=3818932 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-07-28 05:19:05] 2025-07-28 09:18:32,430 | INFO     | .. there are 10 such processes running
[2025-07-28 05:19:05] 2025-07-28 09:18:32,752 | INFO     | --- collectZombieJob: --- 10, [3825722]
[2025-07-28 05:19:05] 2025-07-28 09:18:32,753 | INFO     | zombie collector waiting for pid 3825722
[2025-07-28 05:19:05] 2025-07-28 09:18:32,753 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 05:19:05] 2025-07-28 09:18:32,753 | INFO     | collected zombie processes
[2025-07-28 05:19:05] 2025-07-28 09:18:32,753 | INFO     | will attempt to kill all subprocesses of pid=3825722
[2025-07-28 05:19:05] 2025-07-28 09:18:33,048 | INFO     | process IDs to be killed: [3825722] (in reverse order)
[2025-07-28 05:19:05] 2025-07-28 09:18:33,149 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 05:19:05] 2025-07-28 09:18:33,150 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 05:19:05] 2025-07-28 09:18:33,163 | INFO     | did not find any defunct processes belonging to 3825722
[2025-07-28 05:19:05] 2025-07-28 09:18:33,177 | INFO     | did not find any defunct processes belonging to 3825722
[2025-07-28 05:19:05] 2025-07-28 09:18:33,178 | INFO     | ready for new job
[2025-07-28 05:19:05] 2025-07-28 09:18:33,178 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 05:19:05] 2025-07-28 09:18:33,181 | INFO     | ***************************************
[2025-07-28 05:19:05] 2025-07-28 09:18:33,182 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 05:19:05] 2025-07-28 09:18:33,182 | INFO     | ***************************************
[2025-07-28 05:19:05] 2025-07-28 09:18:33,182 | INFO     | 
[2025-07-28 05:19:05] 2025-07-28 09:18:33,201 | INFO     | architecture information:
[2025-07-28 05:19:05] 2025-07-28 09:18:33,201 | INFO     | executing command: cat /etc/os-release
[2025-07-28 05:19:05] 2025-07-28 09:18:33,220 | INFO     | cat /etc/os-release:
[2025-07-28 05:19:05] NAME="CentOS Linux"
[2025-07-28 05:19:05] VERSION="7 (Core)"
[2025-07-28 05:19:05] ID="centos"
[2025-07-28 05:19:05] ID_LIKE="rhel fedora"
[2025-07-28 05:19:05] VERSION_ID="7"
[2025-07-28 05:19:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 05:19:05] ANSI_COLOR="0;31"
[2025-07-28 05:19:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 05:19:05] HOME_URL="https://www.centos.org/"
[2025-07-28 05:19:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 05:19:05] 
[2025-07-28 05:19:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 05:19:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 05:19:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 05:19:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 05:19:05] 
[2025-07-28 05:19:05] 2025-07-28 09:18:33,222 | INFO     | ***************************************
[2025-07-28 05:19:05] 2025-07-28 09:18:33,725 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 05:19:05] 2025-07-28 09:18:33,743 | INFO     | sufficient remaining disk space (76547096576 B)
[2025-07-28 05:19:05] 2025-07-28 09:18:33,743 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 05:19:05] 2025-07-28 09:18:33,744 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 05:19:05] 2025-07-28 09:18:33,744 | INFO     | update_server=False
[2025-07-28 05:19:05] 2025-07-28 09:18:33,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 05:19:05] 2025-07-28 09:18:33,744 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 05:19:05] 2025-07-28 09:18:33,912 | INFO     | all job control threads have been joined
[2025-07-28 05:19:05] 2025-07-28 09:18:34,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 05:19:05] 2025-07-28 09:18:34,591 | INFO     | aborting loop
[2025-07-28 05:19:05] 2025-07-28 09:18:34,705 | INFO     | all data control threads have been joined
[2025-07-28 05:19:05] 2025-07-28 09:18:34,749 | INFO     | [job] retrieve thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:34,802 | INFO     | all payload control threads have been joined
[2025-07-28 05:19:05] 2025-07-28 09:18:34,807 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:34,908 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:34,917 | INFO     | [job] control thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:34,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 05:19:05] 2025-07-28 09:18:35,548 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:35,596 | INFO     | [job] job monitor thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:35,701 | INFO     | [data] copytool_in thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:35,710 | INFO     | [data] control thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:35,807 | INFO     | [payload] control thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:35,822 | INFO     | [payload] validate_post thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:35,851 | INFO     | [payload] failed_post thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:36,169 | INFO     | [job] validate thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:36,725 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 05:19:05] 2025-07-28 09:18:36,997 | INFO     | [data] copytool_out thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:37,730 | INFO     | [job] queue monitor thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:37,751 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:43,922 | INFO     | job.realtimelogging is not enabled
[2025-07-28 05:19:05] 2025-07-28 09:18:44,927 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 05:19:05] 2025-07-28 09:18:44,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140367901812544)>', '<ExcThread(monitor, started 140367089354496)>']
[2025-07-28 05:19:05] 2025-07-28 09:18:50,011 | INFO     | all workflow threads have been joined
[2025-07-28 05:19:05] 2025-07-28 09:18:50,011 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 05:19:05] 2025-07-28 09:18:50,012 | INFO     | traces error code: 0
[2025-07-28 05:19:05] 2025-07-28 09:18:50,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 05:19:05] 2025-07-28 09:19:03,450 | INFO     | 5688s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-07-28 05:19:05] 2025-07-28 09:19:04,795 | INFO     | PID=3818932 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 05:19:05] 2025-07-28 09:19:04,795 | INFO     | .. there are 10 such processes running
[2025-07-28 05:19:05] 2025-07-28 09:19:04,796 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 05:19:05] 2025-07-28 09:19:04,796 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 05:19:05] 2025-07-28 09:19:04,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 05:19:05] 2025-07-28 09:19:04,797 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 05:19:05] 2025-07-28 09:19:04,797 | INFO     | [monitor] control thread has ended
[2025-07-28 05:19:05] 2025-07-28 09:19:04,978 [wrapper] ==== pilot stdout END ====
[2025-07-28 05:19:05] 2025-07-28 09:19:04,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 05:19:05] 2025-07-28 09:19:04,988 [wrapper] pilotpid: 3818932
[2025-07-28 05:19:05] 2025-07-28 09:19:04,991 [wrapper] Pilot exit status: 0
[2025-07-28 05:19:05] 2025-07-28 09:19:05,008 [wrapper] pandaids: 6745919276
[2025-07-28 05:19:05] 2025-07-28 09:19:05,078 [wrapper] cleanup supervisor_pilot 4118990 3818933
[2025-07-28 05:19:05] 2025-07-28 09:19:05,082 [wrapper] Test setup, not cleaning
[2025-07-28 05:19:05] 2025-07-28 09:19:05,086 [wrapper] apfmon messages muted
[2025-07-28 05:19:05] 2025-07-28 09:19:05,089 [wrapper] ==== wrapper stdout END ====
[2025-07-28 05:19:05] 2025-07-28 09:19:05,093 [wrapper] ==== wrapper stderr END ====
[2025-07-28 05:19:05]  *** Error codes and diagnostics ***
[2025-07-28 05:19:05]     "exeErrorCode": 0,
[2025-07-28 05:19:05]     "exeErrorDiag": "",
[2025-07-28 05:19:05]     "pilotErrorCode": 0,
[2025-07-28 05:19:05]     "pilotErrorDiag": "",
[2025-07-28 05:19:05]  *** Listing of results directory ***
[2025-07-28 05:19:05] total 398484
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas    530466 Jul 26 20:29 pilot3.tar.gz
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas      5112 Jul 26 20:33 queuedata.json
[2025-07-28 05:19:05] -rwx------. 1 boincer umatlas     36292 Jul 26 20:33 runpilot2-wrapper.sh
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas       100 Jul 28 03:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 05:19:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 03:43 run_atlas
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas       105 Jul 28 03:43 job.xml
[2025-07-28 05:19:05] -rw-r--r--. 2 boincer umatlas 232601755 Jul 28 03:43 EVNT.45759062._000001.pool.root.1
[2025-07-28 05:19:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 03:43 start_atlas.sh
[2025-07-28 05:19:05] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 03:43 shared
[2025-07-28 05:19:05] -rw-r--r--. 2 boincer umatlas    542875 Jul 28 03:43 input.tar.gz
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas         0 Jul 28 03:43 boinc_lockfile
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas      2553 Jul 28 03:43 pandaJob.out
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas    978452 Jul 28 03:43 agis_schedconf.cvmfs.json
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas   1593052 Jul 28 03:43 agis_ddmendpoints.agis.ALL.json
[2025-07-28 05:19:05] drwx------. 4 boincer umatlas      4096 Jul 28 03:43 pilot3
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas      6842 Jul 28 05:13 init_data.xml
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas 169732732 Jul 28 05:17 HITS.45759065._000007.pool.root.1
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas       530 Jul 28 05:17 boinc_task_state.xml
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas      1039 Jul 28 05:18 memory_monitor_summary.json
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas    370851 Jul 28 05:18 log.45759065._000007.job.log.tgz.1
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas      7824 Jul 28 05:18 heartbeat.json
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 05:18 boinc_mmap_file
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas        27 Jul 28 05:18 wrapper_checkpoint.txt
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas       938 Jul 28 05:19 pilotlog.txt
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas        95 Jul 28 05:19 pilot_heartbeat.json
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas    549050 Jul 28 05:19 log.45759065._000007.job.log.1
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas       357 Jul 28 05:19 output.list
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas       620 Jul 28 05:19 runtime_log
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas    942080 Jul 28 05:19 result.tar.gz
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas      8667 Jul 28 05:19 runtime_log.err
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas       656 Jul 28 05:19 pBQMDmzV4z7nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAfTLDmtp3iin.diag
[2025-07-28 05:19:05] -rw-r--r--. 1 boincer umatlas     22151 Jul 28 05:19 stderr.txt
[2025-07-28 05:19:05] HITS file was successfully produced:
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas 169732732 Jul 28 05:17 shared/HITS.pool.root.1
[2025-07-28 05:19:05]  *** Contents of shared directory: ***
[2025-07-28 05:19:05] total 394380
[2025-07-28 05:19:05] -rw-r--r--. 2 boincer umatlas 232601755 Jul 28 03:43 ATLAS.root_0
[2025-07-28 05:19:05] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 03:43 start_atlas.sh
[2025-07-28 05:19:05] -rw-r--r--. 2 boincer umatlas    542875 Jul 28 03:43 input.tar.gz
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas 169732732 Jul 28 05:17 HITS.pool.root.1
[2025-07-28 05:19:05] -rw-------. 1 boincer umatlas    942080 Jul 28 05:19 result.tar.gz
05:19:06 (3814796): run_atlas exited; CPU time 59679.940938
05:19:06 (3814796): called boinc_finish(0)

</stderr_txt>
]]>

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