Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:11:43 (979448): wrapper (7.7.26015): starting
02:11:43 (979448): wrapper: running run_atlas (--nthreads 8)
[2025-07-28 02:11:43] Arguments: --nthreads 8
[2025-07-28 02:11:43] Threads: 8
[2025-07-28 02:11:43] Checking for CVMFS
[2025-07-28 02:11:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 02:11:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 02:11:43] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 02:11:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 02:11:44] 2.13.1.0 679170 15204 187196 148838 0 140 40763740 40960000 14029 16776704 0 40277399 99.927 19219334 46688 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 02:11:44] CVMFS is ok
[2025-07-28 02:11:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 02:11:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 02:11:44] Further information can be found at the LHC@home message board.
[2025-07-28 02:11:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 02:11:44] Checking for apptainer binary...
[2025-07-28 02:11:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 02:11:44] Running /usr/bin/apptainer --version
[2025-07-28 02:11:44] apptainer version 1.4.1-1.el9
[2025-07-28 02:11:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 02:11:44] c-212-10.aglt2.org
[2025-07-28 02:11:44] apptainer works
[2025-07-28 02:11:44] Set ATHENA_PROC_NUMBER=8
[2025-07-28 02:11:44] Set ATHENA_CORE_NUMBER=8
[2025-07-28 02:11:44] Starting ATLAS job with PandaID=6748486862
[2025-07-28 02:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 03:51:50]  *** The last 200 lines of the pilot log: ***
[2025-07-28 03:51:50]  is_tar=False
[2025-07-28 03:51:50]  lfn=log.45758324._000132.job.log.tgz.1
[2025-07-28 03:51:50]  mtime=0
[2025-07-28 03:51:50]  protocol_id=None
[2025-07-28 03:51:50]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 03:51:50]  replicas=None
[2025-07-28 03:51:50]  scope=mc23_13p6TeV
[2025-07-28 03:51:50]  status=None
[2025-07-28 03:51:50]  status_code=0
[2025-07-28 03:51:50]  storage_token=
[2025-07-28 03:51:50]  surl=/tmp/boinchome/slots/1/PanDA_Pilot-6748486862/log.45758324._000132.job.log.tgz.1
[2025-07-28 03:51:50]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/d1/log.45758324._000132.job.log.tgz.1
[2025-07-28 03:51:50]  workdir=None
[2025-07-28 03:51:50] ]
[2025-07-28 03:51:50] 2025-07-28 07:51:12,120 | INFO     | transferring file log.45758324._000132.job.log.tgz.1 from /tmp/boinchome/slots/1/PanDA_Pilot-6748486862/log.45758324._000132.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 03:51:50] 2025-07-28 07:51:12,121 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/1/PanDA_Pilot-6748486862/log.45758324._000132.job.log.tgz.1 /tmp/boinchome/slots/1/log.45758324._000132.job
[2025-07-28 03:51:50] 2025-07-28 07:51:12,142 | INFO     | adding to output.list: log.45758324._000132.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/37/d1/log.45758324._000132.job.log.tg
[2025-07-28 03:51:50] 2025-07-28 07:51:12,143 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 03:51:50] 2025-07-28 07:51:12,144 | INFO     | summary of transferred files:
[2025-07-28 03:51:50] 2025-07-28 07:51:12,144 | INFO     |  -- lfn=log.45758324._000132.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 03:51:50] 2025-07-28 07:51:12,144 | INFO     | stage-out finished correctly
[2025-07-28 03:51:50] 2025-07-28 07:51:13,886 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 03:51:50] 2025-07-28 07:51:13,946 | INFO     | job 6748486862 has state=finished
[2025-07-28 03:51:50] 2025-07-28 07:51:13,947 | INFO     | preparing for final server update for job 6748486862 in state='finished'
[2025-07-28 03:51:50] 2025-07-28 07:51:13,948 | INFO     | this job has now completed (state=finished)
[2025-07-28 03:51:50] 2025-07-28 07:51:13,948 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 03:51:50] 2025-07-28 07:51:13,948 | INFO     | log transfer has been attempted: DONE
[2025-07-28 03:51:50] 2025-07-28 07:51:13,948 | INFO     | job 6748486862 has finished - writing final server update
[2025-07-28 03:51:50] 2025-07-28 07:51:13,949 | INFO     | total number of processed events: 400 (read)
[2025-07-28 03:51:50] 2025-07-28 07:51:13,949 | INFO     | executing command: lscpu
[2025-07-28 03:51:50] 2025-07-28 07:51:13,992 | INFO     | PID=983692 has CPU usage=11.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 03:51:50] 2025-07-28 07:51:13,993 | INFO     | .. there are 13 such processes running
[2025-07-28 03:51:50] 2025-07-28 07:51:14,015 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 03:51:50] 2025-07-28 07:51:14,354 | INFO     | monitor loop #436: job 0:6748486862 is in state 'finished'
[2025-07-28 03:51:50] 2025-07-28 07:51:14,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 03:51:50] 2025-07-28 07:51:16,857 | INFO     | monitor loop #437: job 0:6748486862 is in state 'finished'
[2025-07-28 03:51:50] 2025-07-28 07:51:16,857 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 03:51:50] 2025-07-28 07:51:17,722 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 03:51:50] 2025-07-28 07:51:17,727 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3021.445395833334
[2025-07-28 03:51:50] 2025-07-28 07:51:17,743 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6748486862/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 03:51:50] 2025-07-28 07:51:17,744 | INFO     | extracted standard info from prmon json
[2025-07-28 03:51:50] 2025-07-28 07:51:17,744 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 03:51:50] 2025-07-28 07:51:17,744 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 03:51:50] 2025-07-28 07:51:17,745 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 03:51:50] 2025-07-28 07:51:17,745 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 03:51:50] 2025-07-28 07:51:17,747 | INFO     | fitting pss+swap vs Time
[2025-07-28 03:51:50] 2025-07-28 07:51:17,748 | INFO     | sum of square deviations: 233641590.0
[2025-07-28 03:51:50] 2025-07-28 07:51:17,748 | INFO     | sum of deviations: -1990388398.0000002
[2025-07-28 03:51:50] 2025-07-28 07:51:17,748 | INFO     | mean x: 1753686196.0
[2025-07-28 03:51:50] 2025-07-28 07:51:17,748 | INFO     | mean y: 2627172.989010989
[2025-07-28 03:51:50] 2025-07-28 07:51:17,748 | INFO     | -- intersect: 14942247547.303167
[2025-07-28 03:51:50] 2025-07-28 07:51:17,749 | INFO     | intersect: 14942247547.303167
[2025-07-28 03:51:50] 2025-07-28 07:51:17,749 | INFO     | chi2: 0.015846668812487863
[2025-07-28 03:51:50] 2025-07-28 07:51:17,749 | INFO     | -- intersect: 14942247547.303167
[2025-07-28 03:51:50] 2025-07-28 07:51:17,749 | INFO     | current memory leak: -8.52 B/s (using 91 data points, chi2=0.02)
[2025-07-28 03:51:50] 2025-07-28 07:51:17,749 | INFO     | could have reported an average CPU frequency of 2966 MHz (7 samples)
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | ..............................
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . Timing measurements:
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . get job = 0 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . initial setup = 2 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . payload setup = 7 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . stage-in = 0 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . payload execution = 5927 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . stage-out = 0 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | . log creation = 0 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,750 | INFO     | ..............................
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | 
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | job summary report
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | --------------------------------------------------
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | PanDA job id: 6748486862
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | task id: 45758324
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | errors: (none)
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 03:51:50] 2025-07-28 07:51:17,896 | INFO     | pilot state: finished 
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | transexitcode: 0
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | exeerrorcode: 0
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | exeerrordiag: 
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | exitcode: 0
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | exitmsg: OK
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | cpuconsumptiontime: 44032 s
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | nevents: 400
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | neventsw: 0
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | pid: 993417
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | pgrp: 993417
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | corecount: 8
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | event service: False
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | sizes: {0: 2397357, 6: 2397619, 11: 2397647, 5938: 2424314, 5939: 2433312, 5941: 2433368, 5945: 2433690}
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | --------------------------------------------------
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | 
[2025-07-28 03:51:50] 2025-07-28 07:51:17,897 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,918 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 03:51:50] 2025-07-28 07:51:17,919 | INFO     | job 6748486862 has completed (purged errors)
[2025-07-28 03:51:50] 2025-07-28 07:51:17,920 | INFO     | overall cleanup function is called
[2025-07-28 03:51:50] 2025-07-28 07:51:18,926 | INFO     | --- collectZombieJob: --- 10, [993417]
[2025-07-28 03:51:50] 2025-07-28 07:51:18,927 | INFO     | zombie collector waiting for pid 993417
[2025-07-28 03:51:50] 2025-07-28 07:51:18,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 03:51:50] 2025-07-28 07:51:18,927 | INFO     | collected zombie processes
[2025-07-28 03:51:50] 2025-07-28 07:51:18,927 | INFO     | will attempt to kill all subprocesses of pid=993417
[2025-07-28 03:51:50] 2025-07-28 07:51:19,187 | INFO     | process IDs to be killed: [993417] (in reverse order)
[2025-07-28 03:51:50] 2025-07-28 07:51:19,292 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 03:51:50] 2025-07-28 07:51:19,293 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 03:51:50] 2025-07-28 07:51:19,306 | INFO     | did not find any defunct processes belonging to 993417
[2025-07-28 03:51:50] 2025-07-28 07:51:19,318 | INFO     | did not find any defunct processes belonging to 993417
[2025-07-28 03:51:50] 2025-07-28 07:51:19,319 | INFO     | ready for new job
[2025-07-28 03:51:50] 2025-07-28 07:51:19,319 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 03:51:50] 2025-07-28 07:51:19,320 | INFO     | ***************************************
[2025-07-28 03:51:50] 2025-07-28 07:51:19,320 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 03:51:50] 2025-07-28 07:51:19,320 | INFO     | ***************************************
[2025-07-28 03:51:50] 2025-07-28 07:51:19,320 | INFO     | 
[2025-07-28 03:51:50] 2025-07-28 07:51:19,325 | INFO     | architecture information:
[2025-07-28 03:51:50] 2025-07-28 07:51:19,326 | INFO     | executing command: cat /etc/os-release
[2025-07-28 03:51:50] 2025-07-28 07:51:19,338 | INFO     | cat /etc/os-release:
[2025-07-28 03:51:50] NAME="CentOS Linux"
[2025-07-28 03:51:50] VERSION="7 (Core)"
[2025-07-28 03:51:50] ID="centos"
[2025-07-28 03:51:50] ID_LIKE="rhel fedora"
[2025-07-28 03:51:50] VERSION_ID="7"
[2025-07-28 03:51:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 03:51:50] ANSI_COLOR="0;31"
[2025-07-28 03:51:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 03:51:50] HOME_URL="https://www.centos.org/"
[2025-07-28 03:51:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 03:51:50] 
[2025-07-28 03:51:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 03:51:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 03:51:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 03:51:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 03:51:50] 
[2025-07-28 03:51:50] 2025-07-28 07:51:19,338 | INFO     | ***************************************
[2025-07-28 03:51:50] 2025-07-28 07:51:19,841 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-07-28 03:51:50] 2025-07-28 07:51:19,858 | INFO     | sufficient remaining disk space (129815805952 B)
[2025-07-28 03:51:50] 2025-07-28 07:51:19,859 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 03:51:50] 2025-07-28 07:51:19,859 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 03:51:50] 2025-07-28 07:51:19,859 | INFO     | update_server=False
[2025-07-28 03:51:50] 2025-07-28 07:51:19,859 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 03:51:50] 2025-07-28 07:51:19,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 03:51:50] 2025-07-28 07:51:20,153 | INFO     | all job control threads have been joined
[2025-07-28 03:51:50] 2025-07-28 07:51:20,246 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 03:51:50] 2025-07-28 07:51:20,365 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:51:50] 2025-07-28 07:51:20,365 | INFO     | aborting loop
[2025-07-28 03:51:50] 2025-07-28 07:51:20,631 | INFO     | all data control threads have been joined
[2025-07-28 03:51:50] 2025-07-28 07:51:20,837 | INFO     | all payload control threads have been joined
[2025-07-28 03:51:50] 2025-07-28 07:51:20,859 | INFO     | [job] retrieve thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:21,159 | INFO     | [job] control thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:21,329 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:21,371 | INFO     | [job] job monitor thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:21,602 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:21,636 | INFO     | [data] control thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:21,843 | INFO     | [payload] control thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,012 | INFO     | [payload] validate_post thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,227 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,249 | INFO     | [job] validate thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,251 | INFO     | [data] copytool_out thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,278 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,335 | INFO     | [data] copytool_in thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,411 | INFO     | [payload] failed_post thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:22,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:51:50] 2025-07-28 07:51:23,840 | INFO     | [job] queue monitor thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:23,959 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 03:51:50] 2025-07-28 07:51:25,471 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139905739208512)>', '<ExcThread(monitor, started 139905246152448)>']
[2025-07-28 03:51:50] 2025-07-28 07:51:30,497 | INFO     | all workflow threads have been joined
[2025-07-28 03:51:50] 2025-07-28 07:51:30,497 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 03:51:50] 2025-07-28 07:51:30,497 | INFO     | traces error code: 0
[2025-07-28 03:51:50] 2025-07-28 07:51:30,498 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 03:51:50] 2025-07-28 07:51:50,482 | INFO     | PID=983692 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-07-28 03:51:50] 2025-07-28 07:51:50,482 | INFO     | .. there are 13 such processes running
[2025-07-28 03:51:50] 2025-07-28 07:51:50,482 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 03:51:50] 2025-07-28 07:51:50,482 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 03:51:50] 2025-07-28 07:51:50,482 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 03:51:50] 2025-07-28 07:51:50,482 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 03:51:50] 2025-07-28 07:51:50,482 | INFO     | [monitor] control thread has ended
[2025-07-28 03:51:50] 2025-07-28 07:51:50,671 [wrapper] ==== pilot stdout END ====
[2025-07-28 03:51:50] 2025-07-28 07:51:50,676 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 03:51:50] 2025-07-28 07:51:50,680 [wrapper] pilotpid: 983692
[2025-07-28 03:51:50] 2025-07-28 07:51:50,684 [wrapper] Pilot exit status: 0
[2025-07-28 03:51:50] 2025-07-28 07:51:50,700 [wrapper] pandaids: 6748486862
[2025-07-28 03:51:50] 2025-07-28 07:51:50,780 [wrapper] cleanup supervisor_pilot 1121598 983693
[2025-07-28 03:51:50] 2025-07-28 07:51:50,786 [wrapper] Test setup, not cleaning
[2025-07-28 03:51:50] 2025-07-28 07:51:50,791 [wrapper] apfmon messages muted
[2025-07-28 03:51:50] 2025-07-28 07:51:50,794 [wrapper] ==== wrapper stdout END ====
[2025-07-28 03:51:50] 2025-07-28 07:51:50,797 [wrapper] ==== wrapper stderr END ====
[2025-07-28 03:51:50]  *** Error codes and diagnostics ***
[2025-07-28 03:51:50]     "exeErrorCode": 0,
[2025-07-28 03:51:50]     "exeErrorDiag": "",
[2025-07-28 03:51:50]     "pilotErrorCode": 0,
[2025-07-28 03:51:50]     "pilotErrorDiag": "",
[2025-07-28 03:51:50]  *** Listing of results directory ***
[2025-07-28 03:51:50] total 422796
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas    530466 Jul 28 01:59 pilot3.tar.gz
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas      5112 Jul 28 02:10 queuedata.json
[2025-07-28 03:51:50] -rwx------. 1 boincer umatlas     36292 Jul 28 02:11 runpilot2-wrapper.sh
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas       100 Jul 28 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 03:51:50] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 28 02:11 run_atlas
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas       105 Jul 28 02:11 job.xml
[2025-07-28 03:51:50] -rw-r--r--. 2 boincer umatlas 246454685 Jul 28 02:11 EVNT.45758322._000004.pool.root.1
[2025-07-28 03:51:50] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 02:11 start_atlas.sh
[2025-07-28 03:51:50] drwxrwx--x. 2 boincer umatlas      4096 Jul 28 02:11 shared
[2025-07-28 03:51:50] -rw-r--r--. 2 boincer umatlas    542885 Jul 28 02:11 input.tar.gz
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas         0 Jul 28 02:11 boinc_lockfile
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas      2550 Jul 28 02:11 pandaJob.out
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas    980125 Jul 28 02:11 agis_schedconf.cvmfs.json
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas   1593052 Jul 28 02:11 agis_ddmendpoints.agis.ALL.json
[2025-07-28 03:51:50] drwx------. 4 boincer umatlas      4096 Jul 28 02:11 pilot3
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas      6944 Jul 28 03:48 init_data.xml
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas 180854732 Jul 28 03:50 HITS.45758324._000132.pool.root.1
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas       529 Jul 28 03:50 boinc_task_state.xml
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas      1034 Jul 28 03:51 memory_monitor_summary.json
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas        95 Jul 28 03:51 pilot_heartbeat.json
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas    308997 Jul 28 03:51 log.45758324._000132.job.log.tgz.1
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas      7762 Jul 28 03:51 heartbeat.json
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 03:51 boinc_mmap_file
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas        27 Jul 28 03:51 wrapper_checkpoint.txt
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas       822 Jul 28 03:51 pilotlog.txt
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas    571145 Jul 28 03:51 log.45758324._000132.job.log.1
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas       357 Jul 28 03:51 output.list
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas       620 Jul 28 03:51 runtime_log
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas    901120 Jul 28 03:51 result.tar.gz
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas      8660 Jul 28 03:51 runtime_log.err
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas       653 Jul 28 03:51 K8XKDm0FW07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnbWLDmgXUi0n.diag
[2025-07-28 03:51:50] -rw-r--r--. 1 boincer umatlas     21656 Jul 28 03:51 stderr.txt
[2025-07-28 03:51:50] HITS file was successfully produced:
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas 180854732 Jul 28 03:50 shared/HITS.pool.root.1
[2025-07-28 03:51:50]  *** Contents of shared directory: ***
[2025-07-28 03:51:50] total 418728
[2025-07-28 03:51:50] -rw-r--r--. 2 boincer umatlas 246454685 Jul 28 02:11 ATLAS.root_0
[2025-07-28 03:51:50] -rw-r--r--. 2 boincer umatlas     15095 Jul 28 02:11 start_atlas.sh
[2025-07-28 03:51:50] -rw-r--r--. 2 boincer umatlas    542885 Jul 28 02:11 input.tar.gz
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas 180854732 Jul 28 03:50 HITS.pool.root.1
[2025-07-28 03:51:50] -rw-------. 1 boincer umatlas    901120 Jul 28 03:51 result.tar.gz
03:51:52 (979448): run_atlas exited; CPU time 44169.463733
03:51:52 (979448): called boinc_finish(0)

</stderr_txt>
]]>

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