Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
02:11:42 (24355): wrapper (7.7.26015): starting
02:11:42 (24355): wrapper: running run_atlas (--nthreads 12)
[2025-07-28 02:11:42] Arguments: --nthreads 12
[2025-07-28 02:11:42] Threads: 12
[2025-07-28 02:11:42] Checking for CVMFS
[2025-07-28 02:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-28 02:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-28 02:11:42] Running cvmfs_config stat atlas.cern.ch
[2025-07-28 02:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-28 02:11:42] 2.11.2.0 2914 113065 96040 148838 1 1 15639042 20275201 1 130560 0 38602677 99.970 9762470 10675 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-28 02:11:42] CVMFS is ok
[2025-07-28 02:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-28 02:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-28 02:11:42] Further information can be found at the LHC@home message board.
[2025-07-28 02:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-28 02:11:42] Checking for apptainer binary...
[2025-07-28 02:11:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-28 02:11:42] Running /usr/bin/apptainer --version
[2025-07-28 02:11:42] apptainer version 1.3.2-1.el7
[2025-07-28 02:11:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-28 02:11:44] c-205-5.aglt2.org
[2025-07-28 02:11:44] apptainer works
[2025-07-28 02:11:44] Set ATHENA_PROC_NUMBER=12
[2025-07-28 02:11:44] Set ATHENA_CORE_NUMBER=12
[2025-07-28 02:11:44] Starting ATLAS job with PandaID=6748486861
[2025-07-28 02:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 03:34:34]  *** The last 200 lines of the pilot log: ***
[2025-07-28 03:34:34]  is_tar=False
[2025-07-28 03:34:34]  lfn=log.45743349._056262.job.log.tgz.1
[2025-07-28 03:34:34]  mtime=0
[2025-07-28 03:34:34]  protocol_id=None
[2025-07-28 03:34:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 03:34:34]  replicas=None
[2025-07-28 03:34:34]  scope=mc23_13p6TeV
[2025-07-28 03:34:34]  status=None
[2025-07-28 03:34:34]  status_code=0
[2025-07-28 03:34:34]  storage_token=
[2025-07-28 03:34:34]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6748486861/log.45743349._056262.job.log.tgz.1
[2025-07-28 03:34:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/69/log.45743349._056262.job.log.tgz.1
[2025-07-28 03:34:34]  workdir=None
[2025-07-28 03:34:34] ]
[2025-07-28 03:34:34] 2025-07-28 07:33:55,902 | INFO     | transferring file log.45743349._056262.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6748486861/log.45743349._056262.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-07-28 03:34:34] 2025-07-28 07:33:55,902 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6748486861/log.45743349._056262.job.log.tgz.1 /tmp/boinchome/slots/0/log.45743349._056262.job
[2025-07-28 03:34:34] 2025-07-28 07:33:55,927 | INFO     | adding to output.list: log.45743349._056262.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/69/log.45743349._056262.job.log.tg
[2025-07-28 03:34:34] 2025-07-28 07:33:55,927 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 03:34:34] 2025-07-28 07:33:55,928 | INFO     | summary of transferred files:
[2025-07-28 03:34:34] 2025-07-28 07:33:55,928 | INFO     |  -- lfn=log.45743349._056262.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 03:34:34] 2025-07-28 07:33:55,928 | INFO     | stage-out finished correctly
[2025-07-28 03:34:34] 2025-07-28 07:33:56,327 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 03:34:34] 2025-07-28 07:33:56,793 | INFO     | monitor loop #369: job 0:6748486861 is in state 'finished'
[2025-07-28 03:34:34] 2025-07-28 07:33:56,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 03:34:34] 2025-07-28 07:33:58,027 | INFO     | job 6748486861 has state=finished
[2025-07-28 03:34:34] 2025-07-28 07:33:58,028 | INFO     | preparing for final server update for job 6748486861 in state='finished'
[2025-07-28 03:34:34] 2025-07-28 07:33:58,028 | INFO     | this job has now completed (state=finished)
[2025-07-28 03:34:34] 2025-07-28 07:33:58,028 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 03:34:34] 2025-07-28 07:33:58,029 | INFO     | log transfer has been attempted: DONE
[2025-07-28 03:34:34] 2025-07-28 07:33:58,029 | INFO     | job 6748486861 has finished - writing final server update
[2025-07-28 03:34:34] 2025-07-28 07:33:58,029 | INFO     | total number of processed events: 400 (read)
[2025-07-28 03:34:34] 2025-07-28 07:33:58,030 | INFO     | executing command: lscpu
[2025-07-28 03:34:34] 2025-07-28 07:33:58,057 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 03:34:34] 2025-07-28 07:33:59,296 | INFO     | monitor loop #370: job 0:6748486861 is in state 'finished'
[2025-07-28 03:34:34] 2025-07-28 07:33:59,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 03:34:34] 2025-07-28 07:34:01,799 | INFO     | monitor loop #371: job 0:6748486861 is in state 'finished'
[2025-07-28 03:34:34] 2025-07-28 07:34:01,799 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 03:34:34] 2025-07-28 07:34:02,962 | INFO     | CPU arch script returned: x86-64-v2
[2025-07-28 03:34:34] 2025-07-28 07:34:02,965 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1684.75
[2025-07-28 03:34:34] 2025-07-28 07:34:02,968 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6748486861/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 03:34:34] 2025-07-28 07:34:02,968 | INFO     | extracted standard info from prmon json
[2025-07-28 03:34:34] 2025-07-28 07:34:02,969 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 03:34:34] 2025-07-28 07:34:02,969 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 03:34:34] 2025-07-28 07:34:02,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 03:34:34] 2025-07-28 07:34:02,969 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 03:34:34] 2025-07-28 07:34:02,971 | INFO     | fitting pss+swap vs Time
[2025-07-28 03:34:34] 2025-07-28 07:34:02,971 | INFO     | sum of square deviations: 125630262.5
[2025-07-28 03:34:34] 2025-07-28 07:34:02,971 | INFO     | sum of deviations: 1195579382.0
[2025-07-28 03:34:34] 2025-07-28 07:34:02,971 | INFO     | mean x: 1753685681.5
[2025-07-28 03:34:34] 2025-07-28 07:34:02,971 | INFO     | mean y: 2674429.2702702703
[2025-07-28 03:34:34] 2025-07-28 07:34:02,972 | INFO     | -- intersect: -16686540426.983166
[2025-07-28 03:34:34] 2025-07-28 07:34:02,972 | INFO     | intersect: -16686540426.983166
[2025-07-28 03:34:34] 2025-07-28 07:34:02,972 | INFO     | chi2: 0.0023445834704156478
[2025-07-28 03:34:34] 2025-07-28 07:34:02,972 | INFO     | -- intersect: -16686540426.983166
[2025-07-28 03:34:34] 2025-07-28 07:34:02,972 | INFO     | current memory leak: 9.52 B/s (using 74 data points, chi2=0.00)
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | could have reported an average CPU frequency of 2032 MHz (6 samples)
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | ..............................
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | . Timing measurements:
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | . get job = 0 s
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | . initial setup = 2 s
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | . payload setup = 10 s
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | . stage-in = 0 s
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | . payload execution = 4886 s
[2025-07-28 03:34:34] 2025-07-28 07:34:02,973 | INFO     | . stage-out = 0 s
[2025-07-28 03:34:34] 2025-07-28 07:34:02,974 | INFO     | . log creation = 0 s
[2025-07-28 03:34:34] 2025-07-28 07:34:02,974 | INFO     | ..............................
[2025-07-28 03:34:34] 2025-07-28 07:34:03,162 | INFO     | 
[2025-07-28 03:34:34] 2025-07-28 07:34:03,162 | INFO     | job summary report
[2025-07-28 03:34:34] 2025-07-28 07:34:03,162 | INFO     | --------------------------------------------------
[2025-07-28 03:34:34] 2025-07-28 07:34:03,162 | INFO     | PanDA job id: 6748486861
[2025-07-28 03:34:34] 2025-07-28 07:34:03,163 | INFO     | task id: 45743349
[2025-07-28 03:34:34] 2025-07-28 07:34:03,163 | INFO     | errors: (none)
[2025-07-28 03:34:34] 2025-07-28 07:34:03,163 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 03:34:34] 2025-07-28 07:34:03,163 | INFO     | pilot state: finished 
[2025-07-28 03:34:34] 2025-07-28 07:34:03,163 | INFO     | transexitcode: 0
[2025-07-28 03:34:34] 2025-07-28 07:34:03,163 | INFO     | exeerrorcode: 0
[2025-07-28 03:34:34] 2025-07-28 07:34:03,164 | INFO     | exeerrordiag: 
[2025-07-28 03:34:34] 2025-07-28 07:34:03,164 | INFO     | exitcode: 0
[2025-07-28 03:34:34] 2025-07-28 07:34:03,164 | INFO     | exitmsg: OK
[2025-07-28 03:34:34] 2025-07-28 07:34:03,164 | INFO     | cpuconsumptiontime: 53216 s
[2025-07-28 03:34:34] 2025-07-28 07:34:03,164 | INFO     | nevents: 400
[2025-07-28 03:34:34] 2025-07-28 07:34:03,164 | INFO     | neventsw: 0
[2025-07-28 03:34:34] 2025-07-28 07:34:03,164 | INFO     | pid: 2176
[2025-07-28 03:34:34] 2025-07-28 07:34:03,165 | INFO     | pgrp: 2176
[2025-07-28 03:34:34] 2025-07-28 07:34:03,165 | INFO     | corecount: 12
[2025-07-28 03:34:34] 2025-07-28 07:34:03,165 | INFO     | event service: False
[2025-07-28 03:34:34] 2025-07-28 07:34:03,165 | INFO     | sizes: {0: 2397424, 5: 2397686, 11: 2397742, 4899: 2423990, 4901: 2433016, 4902: 2433072, 4908: 2433394}
[2025-07-28 03:34:34] 2025-07-28 07:34:03,165 | INFO     | --------------------------------------------------
[2025-07-28 03:34:34] 2025-07-28 07:34:03,165 | INFO     | 
[2025-07-28 03:34:34] 2025-07-28 07:34:03,166 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-07-28 03:34:34] 2025-07-28 07:34:03,191 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,191 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,191 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,191 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,192 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,192 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,192 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,192 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,192 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,192 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,193 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,193 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,193 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,193 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,194 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 03:34:34] 2025-07-28 07:34:03,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,194 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 03:34:34] 2025-07-28 07:34:03,194 | INFO     | job 6748486861 has completed (purged errors)
[2025-07-28 03:34:34] 2025-07-28 07:34:03,195 | INFO     | overall cleanup function is called
[2025-07-28 03:34:34] 2025-07-28 07:34:04,203 | INFO     | --- collectZombieJob: --- 10, [2176]
[2025-07-28 03:34:34] 2025-07-28 07:34:04,203 | INFO     | zombie collector waiting for pid 2176
[2025-07-28 03:34:34] 2025-07-28 07:34:04,203 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 03:34:34] 2025-07-28 07:34:04,204 | INFO     | collected zombie processes
[2025-07-28 03:34:34] 2025-07-28 07:34:04,204 | INFO     | will attempt to kill all subprocesses of pid=2176
[2025-07-28 03:34:34] 2025-07-28 07:34:04,293 | INFO     | process IDs to be killed: [2176] (in reverse order)
[2025-07-28 03:34:34] 2025-07-28 07:34:04,346 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 03:34:34] 2025-07-28 07:34:04,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 03:34:34] 2025-07-28 07:34:04,350 | INFO     | did not find any defunct processes belonging to 2176
[2025-07-28 03:34:34] 2025-07-28 07:34:04,353 | INFO     | did not find any defunct processes belonging to 2176
[2025-07-28 03:34:34] 2025-07-28 07:34:04,353 | INFO     | ready for new job
[2025-07-28 03:34:34] 2025-07-28 07:34:04,353 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 03:34:34] 2025-07-28 07:34:04,354 | INFO     | ***************************************
[2025-07-28 03:34:34] 2025-07-28 07:34:04,355 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 03:34:34] 2025-07-28 07:34:04,355 | INFO     | ***************************************
[2025-07-28 03:34:34] 2025-07-28 07:34:04,355 | INFO     | 
[2025-07-28 03:34:34] 2025-07-28 07:34:04,356 | INFO     | architecture information:
[2025-07-28 03:34:34] 2025-07-28 07:34:04,356 | INFO     | executing command: cat /etc/os-release
[2025-07-28 03:34:34] 2025-07-28 07:34:04,374 | INFO     | cat /etc/os-release:
[2025-07-28 03:34:34] NAME="CentOS Linux"
[2025-07-28 03:34:34] VERSION="7 (Core)"
[2025-07-28 03:34:34] ID="centos"
[2025-07-28 03:34:34] ID_LIKE="rhel fedora"
[2025-07-28 03:34:34] VERSION_ID="7"
[2025-07-28 03:34:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 03:34:34] ANSI_COLOR="0;31"
[2025-07-28 03:34:34] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 03:34:34] HOME_URL="https://www.centos.org/"
[2025-07-28 03:34:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 03:34:34] 
[2025-07-28 03:34:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 03:34:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 03:34:34] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 03:34:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 03:34:34] 
[2025-07-28 03:34:34] 2025-07-28 07:34:04,374 | INFO     | ***************************************
[2025-07-28 03:34:34] 2025-07-28 07:34:04,877 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-07-28 03:34:34] 2025-07-28 07:34:04,896 | INFO     | sufficient remaining disk space (29348593664 B)
[2025-07-28 03:34:34] 2025-07-28 07:34:04,896 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 03:34:34] 2025-07-28 07:34:04,896 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 03:34:34] 2025-07-28 07:34:04,896 | INFO     | update_server=False
[2025-07-28 03:34:34] 2025-07-28 07:34:04,897 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 03:34:34] 2025-07-28 07:34:04,897 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 03:34:34] 2025-07-28 07:34:04,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:34:34] 2025-07-28 07:34:05,307 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 03:34:34] 2025-07-28 07:34:05,307 | INFO     | aborting loop
[2025-07-28 03:34:34] 2025-07-28 07:34:05,334 | INFO     | all payload control threads have been joined
[2025-07-28 03:34:34] 2025-07-28 07:34:05,895 | INFO     | all data control threads have been joined
[2025-07-28 03:34:34] 2025-07-28 07:34:05,901 | INFO     | [job] retrieve thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:05,903 | INFO     | [job] queue monitor thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,133 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,153 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,187 | INFO     | [payload] validate_post thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,187 | INFO     | all job control threads have been joined
[2025-07-28 03:34:34] 2025-07-28 07:34:06,313 | INFO     | [job] job monitor thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,340 | INFO     | [payload] control thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,695 | INFO     | [data] copytool_in thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,900 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,901 | INFO     | [data] copytool_out thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,901 | INFO     | [data] control thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:06,915 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 03:34:34] 2025-07-28 07:34:07,089 | INFO     | [payload] failed_post thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:07,192 | INFO     | [job] control thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:07,274 | INFO     | [job] validate thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:10,920 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:15,091 | INFO     | job.realtimelogging is not enabled
[2025-07-28 03:34:34] 2025-07-28 07:34:16,096 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 03:34:34] 2025-07-28 07:34:17,148 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140447013521216)>', '<ExcThread(monitor, started 140446302992128)>']
[2025-07-28 03:34:34] 2025-07-28 07:34:22,173 | INFO     | all workflow threads have been joined
[2025-07-28 03:34:34] 2025-07-28 07:34:22,176 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 03:34:34] 2025-07-28 07:34:22,179 | INFO     | traces error code: 0
[2025-07-28 03:34:34] 2025-07-28 07:34:22,179 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 03:34:34] 2025-07-28 07:34:34,395 | INFO     | PID=28047 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-07-28 03:34:34] 2025-07-28 07:34:34,395 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 03:34:34] 2025-07-28 07:34:34,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 03:34:34] 2025-07-28 07:34:34,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 03:34:34] 2025-07-28 07:34:34,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 03:34:34] 2025-07-28 07:34:34,396 | INFO     | [monitor] control thread has ended
[2025-07-28 03:34:34] 2025-07-28 07:34:34,491 [wrapper] ==== pilot stdout END ====
[2025-07-28 03:34:34] 2025-07-28 07:34:34,495 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 03:34:34] 2025-07-28 07:34:34,499 [wrapper] pilotpid: 28047
[2025-07-28 03:34:34] 2025-07-28 07:34:34,502 [wrapper] Pilot exit status: 0
[2025-07-28 03:34:34] 2025-07-28 07:34:34,518 [wrapper] pandaids: 6748486861
[2025-07-28 03:34:34] 2025-07-28 07:34:34,562 [wrapper] cleanup supervisor_pilot 18288 28048
[2025-07-28 03:34:34] 2025-07-28 07:34:34,566 [wrapper] Test setup, not cleaning
[2025-07-28 03:34:34] 2025-07-28 07:34:34,569 [wrapper] apfmon messages muted
[2025-07-28 03:34:34] 2025-07-28 07:34:34,574 [wrapper] ==== wrapper stdout END ====
[2025-07-28 03:34:34] 2025-07-28 07:34:34,577 [wrapper] ==== wrapper stderr END ====
[2025-07-28 03:34:34]  *** Error codes and diagnostics ***
[2025-07-28 03:34:34]     "exeErrorCode": 0,
[2025-07-28 03:34:34]     "exeErrorDiag": "",
[2025-07-28 03:34:34]     "pilotErrorCode": 0,
[2025-07-28 03:34:34]     "pilotErrorDiag": "",
[2025-07-28 03:34:34]  *** Listing of results directory ***
[2025-07-28 03:34:34] total 430656
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas    530466 Jul 28 01:59 pilot3.tar.gz
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas      5112 Jul 28 02:10 queuedata.json
[2025-07-28 03:34:34] -rwx------ 1 boincer umatlas     36292 Jul 28 02:11 runpilot2-wrapper.sh
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas       100 Jul 28 02:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 03:34:34] -rwxr-xr-x 1 boincer umatlas      7986 Jul 28 02:11 run_atlas
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas       105 Jul 28 02:11 job.xml
[2025-07-28 03:34:34] -rw-r--r-- 2 boincer umatlas 229617797 Jul 28 02:11 EVNT.45743347._002730.pool.root.1
[2025-07-28 03:34:34] drwxrwx--x 2 boincer umatlas      4096 Jul 28 02:11 shared
[2025-07-28 03:34:34] -rw-r--r-- 2 boincer umatlas    542898 Jul 28 02:11 input.tar.gz
[2025-07-28 03:34:34] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 02:11 start_atlas.sh
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas         0 Jul 28 02:11 boinc_lockfile
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas      2562 Jul 28 02:11 pandaJob.out
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas    980125 Jul 28 02:11 agis_schedconf.cvmfs.json
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas   1593052 Jul 28 02:11 agis_ddmendpoints.agis.ALL.json
[2025-07-28 03:34:34] drwx------ 4 boincer umatlas      4096 Jul 28 02:11 pilot3
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas      5866 Jul 28 03:31 init_data.xml
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas 205829049 Jul 28 03:33 HITS.45743349._056262.pool.root.1
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas       529 Jul 28 03:33 boinc_task_state.xml
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas      1045 Jul 28 03:33 memory_monitor_summary.json
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas    366299 Jul 28 03:33 log.45743349._056262.job.log.tgz.1
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas      8192 Jul 28 03:34 boinc_mmap_file
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas        27 Jul 28 03:34 wrapper_checkpoint.txt
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas        95 Jul 28 03:34 pilot_heartbeat.json
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas      7847 Jul 28 03:34 heartbeat.json
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas       745 Jul 28 03:34 pilotlog.txt
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas    469107 Jul 28 03:34 log.45743349._056262.job.log.1
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas       357 Jul 28 03:34 output.list
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas       620 Jul 28 03:34 runtime_log
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas    849920 Jul 28 03:34 result.tar.gz
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas      8657 Jul 28 03:34 runtime_log.err
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas       658 Jul 28 03:34 3XWKDm0FW07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmmbWLDmexQWVo.diag
[2025-07-28 03:34:34] -rw-r--r-- 1 boincer umatlas     21544 Jul 28 03:34 stderr.txt
[2025-07-28 03:34:34] HITS file was successfully produced:
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas 205829049 Jul 28 03:33 shared/HITS.pool.root.1
[2025-07-28 03:34:34]  *** Contents of shared directory: ***
[2025-07-28 03:34:34] total 426632
[2025-07-28 03:34:34] -rw-r--r-- 2 boincer umatlas 229617797 Jul 28 02:11 ATLAS.root_0
[2025-07-28 03:34:34] -rw-r--r-- 2 boincer umatlas    542898 Jul 28 02:11 input.tar.gz
[2025-07-28 03:34:34] -rw-r--r-- 2 boincer umatlas     15095 Jul 28 02:11 start_atlas.sh
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas 205829049 Jul 28 03:33 HITS.pool.root.1
[2025-07-28 03:34:34] -rw------- 1 boincer umatlas    849920 Jul 28 03:34 result.tar.gz
03:34:36 (24355): run_atlas exited; CPU time 53195.901851
03:34:36 (24355): called boinc_finish(0)

</stderr_txt>
]]>

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