Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:56:37 (2658511): wrapper (7.7.26015): starting
23:56:37 (2658511): wrapper: running run_atlas (--nthreads 8)
[2025-07-27 23:56:37] Arguments: --nthreads 8
[2025-07-27 23:56:37] Threads: 8
[2025-07-27 23:56:37] Checking for CVMFS
[2025-07-27 23:56:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-07-27 23:56:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-07-27 23:56:37] Running cvmfs_config stat atlas.cern.ch
[2025-07-27 23:56:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-07-27 23:56:37] 2.13.1.0 5097 14905 197164 148834 1 196 24535378 40960000 10021 16776704 0 47877980 99.936 17677094 43558 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-07-27 23:56:37] CVMFS is ok
[2025-07-27 23:56:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-07-27 23:56:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-07-27 23:56:37] Further information can be found at the LHC@home message board.
[2025-07-27 23:56:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-07-27 23:56:37] Checking for apptainer binary...
[2025-07-27 23:56:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-07-27 23:56:37] Running /usr/bin/apptainer --version
[2025-07-27 23:56:37] apptainer version 1.4.1-1.el9
[2025-07-27 23:56:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-07-27 23:56:37] c-212-6.aglt2.org
[2025-07-27 23:56:37] apptainer works
[2025-07-27 23:56:37] Set ATHENA_PROC_NUMBER=8
[2025-07-27 23:56:37] Set ATHENA_CORE_NUMBER=8
[2025-07-27 23:56:37] Starting ATLAS job with PandaID=6747698589
[2025-07-27 23:56:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-07-28 01:01:35]  *** The last 200 lines of the pilot log: ***
[2025-07-28 01:01:35]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2025-07-28 01:01:35]  is_altstaged=None
[2025-07-28 01:01:35]  is_tar=False
[2025-07-28 01:01:35]  lfn=log.45743349._055135.job.log.tgz.1
[2025-07-28 01:01:35]  mtime=0
[2025-07-28 01:01:35]  protocol_id=None
[2025-07-28 01:01:35]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-07-28 01:01:35]  replicas=None
[2025-07-28 01:01:35]  scope=mc23_13p6TeV
[2025-07-28 01:01:35]  status=None
[2025-07-28 01:01:35]  status_code=0
[2025-07-28 01:01:35]  storage_token=
[2025-07-28 01:01:35]  surl=/tmp/boinchome/slots/10/PanDA_Pilot-6747698589/log.45743349._055135.job.log.tgz.1
[2025-07-28 01:01:35]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/e5/log.45743349._055135.job.log.tgz.1
[2025-07-28 01:01:35]  workdir=None
[2025-07-28 01:01:35] ]
[2025-07-28 01:01:35] 2025-07-28 05:00:59,766 | INFO     | transferring file log.45743349._055135.job.log.tgz.1 from /tmp/boinchome/slots/10/PanDA_Pilot-6747698589/log.45743349._055135.job.log.tgz.1 to /tmp/boinchome/slots
[2025-07-28 01:01:35] 2025-07-28 05:00:59,766 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/10/PanDA_Pilot-6747698589/log.45743349._055135.job.log.tgz.1 /tmp/boinchome/slots/10/log.45743349._055135.j
[2025-07-28 01:01:35] 2025-07-28 05:00:59,784 | INFO     | adding to output.list: log.45743349._055135.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ad/e5/log.45743349._055135.job.log.tg
[2025-07-28 01:01:35] 2025-07-28 05:00:59,785 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-07-28 01:01:35] 2025-07-28 05:00:59,785 | INFO     | summary of transferred files:
[2025-07-28 01:01:35] 2025-07-28 05:00:59,785 | INFO     |  -- lfn=log.45743349._055135.job.log.tgz.1, status_code=0, status=transferred
[2025-07-28 01:01:35] 2025-07-28 05:00:59,785 | INFO     | stage-out finished correctly
[2025-07-28 01:01:35] 2025-07-28 05:00:59,835 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-07-28 01:01:35] 2025-07-28 05:00:59,878 | INFO     | job 6747698589 has state=finished
[2025-07-28 01:01:35] 2025-07-28 05:00:59,879 | INFO     | preparing for final server update for job 6747698589 in state='finished'
[2025-07-28 01:01:35] 2025-07-28 05:00:59,928 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-07-28 01:01:35] 2025-07-28 05:00:59,928 | INFO     | this job has now completed (state=finished)
[2025-07-28 01:01:35] 2025-07-28 05:00:59,928 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-07-28 01:01:35] 2025-07-28 05:00:59,928 | INFO     | log transfer has been attempted: DONE
[2025-07-28 01:01:35] 2025-07-28 05:00:59,929 | INFO     | job 6747698589 has finished - writing final server update
[2025-07-28 01:01:35] 2025-07-28 05:00:59,929 | INFO     | total number of processed events: 400 (read)
[2025-07-28 01:01:35] 2025-07-28 05:00:59,929 | INFO     | executing command: lscpu
[2025-07-28 01:01:35] 2025-07-28 05:00:59,970 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-07-28 01:01:35] 2025-07-28 05:01:01,121 | INFO     | monitor loop #288: job 0:6747698589 is in state 'finished'
[2025-07-28 01:01:35] 2025-07-28 05:01:01,121 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-07-28 01:01:35] 2025-07-28 05:01:03,025 | INFO     | CPU arch script returned: x86-64-v3
[2025-07-28 01:01:35] 2025-07-28 05:01:03,029 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3326.9918645833313
[2025-07-28 01:01:35] 2025-07-28 05:01:03,038 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6747698589/memory_monitor_summary.json (trf name=prmon)
[2025-07-28 01:01:35] 2025-07-28 05:01:03,039 | INFO     | extracted standard info from prmon json
[2025-07-28 01:01:35] 2025-07-28 05:01:03,039 | INFO     | extracted standard memory fields from prmon json
[2025-07-28 01:01:35] 2025-07-28 05:01:03,039 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-07-28 01:01:35] 2025-07-28 05:01:03,039 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-07-28 01:01:35] 2025-07-28 05:01:03,039 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | fitting pss+swap vs Time
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | sum of square deviations: 54438230.0
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | sum of deviations: -123730234.5
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | mean x: 1753677026.5
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | mean y: 2519392.625
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | -- intersect: 3988373997.488305
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | intersect: 3988373997.488305
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | chi2: 0.00248968025535535
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | -- intersect: 3988373997.488305
[2025-07-28 01:01:35] 2025-07-28 05:01:03,041 | INFO     | current memory leak: -2.27 B/s (using 56 data points, chi2=0.00)
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | could have reported an average CPU frequency of 3331 MHz (6 samples)
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | ..............................
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . Timing measurements:
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . get job = 0 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . initial setup = 2 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . payload setup = 8 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . stage-in = 0 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . payload execution = 3818 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . stage-out = 0 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | . log creation = 0 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,042 | INFO     | ..............................
[2025-07-28 01:01:35] 2025-07-28 05:01:03,105 | INFO     | 
[2025-07-28 01:01:35] 2025-07-28 05:01:03,105 | INFO     | job summary report
[2025-07-28 01:01:35] 2025-07-28 05:01:03,105 | INFO     | --------------------------------------------------
[2025-07-28 01:01:35] 2025-07-28 05:01:03,105 | INFO     | PanDA job id: 6747698589
[2025-07-28 01:01:35] 2025-07-28 05:01:03,105 | INFO     | task id: 45743349
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | errors: (none)
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | status: LOG_TRANSFER = DONE 
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | pilot state: finished 
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | transexitcode: 0
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | exeerrorcode: 0
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | exeerrordiag: 
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | exitcode: 0
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | exitmsg: OK
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | cpuconsumptiontime: 28000 s
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | nevents: 400
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | neventsw: 0
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | pid: 2668614
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | pgrp: 2668614
[2025-07-28 01:01:35] 2025-07-28 05:01:03,106 | INFO     | corecount: 8
[2025-07-28 01:01:35] 2025-07-28 05:01:03,107 | INFO     | event service: False
[2025-07-28 01:01:35] 2025-07-28 05:01:03,107 | INFO     | sizes: {0: 2397253, 1: 2397452, 6: 2397714, 11: 2397742, 3831: 2423496, 3832: 2432680, 3835: 2432818}
[2025-07-28 01:01:35] 2025-07-28 05:01:03,107 | INFO     | --------------------------------------------------
[2025-07-28 01:01:35] 2025-07-28 05:01:03,107 | INFO     | 
[2025-07-28 01:01:35] 2025-07-28 05:01:03,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue jobs had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue payloads had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue data_in had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue data_out had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,126 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | queue completed_jobids has 1 job(s)
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | queue messages had 0 job(s) [purged]
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | job 6747698589 has completed (purged errors)
[2025-07-28 01:01:35] 2025-07-28 05:01:03,127 | INFO     | overall cleanup function is called
[2025-07-28 01:01:35] 2025-07-28 05:01:04,134 | INFO     | --- collectZombieJob: --- 10, [2668614]
[2025-07-28 01:01:35] 2025-07-28 05:01:04,134 | INFO     | zombie collector waiting for pid 2668614
[2025-07-28 01:01:35] 2025-07-28 05:01:04,134 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-07-28 01:01:35] 2025-07-28 05:01:04,134 | INFO     | collected zombie processes
[2025-07-28 01:01:35] 2025-07-28 05:01:04,134 | INFO     | will attempt to kill all subprocesses of pid=2668614
[2025-07-28 01:01:35] 2025-07-28 05:01:04,340 | INFO     | process IDs to be killed: [2668614] (in reverse order)
[2025-07-28 01:01:35] 2025-07-28 05:01:04,411 | WARNING  | found no corresponding commands to process id(s)
[2025-07-28 01:01:35] 2025-07-28 05:01:04,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-07-28 01:01:35] 2025-07-28 05:01:04,418 | INFO     | did not find any defunct processes belonging to 2668614
[2025-07-28 01:01:35] 2025-07-28 05:01:04,423 | INFO     | did not find any defunct processes belonging to 2668614
[2025-07-28 01:01:35] 2025-07-28 05:01:04,423 | INFO     | ready for new job
[2025-07-28 01:01:35] 2025-07-28 05:01:04,423 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-07-28 01:01:35] 2025-07-28 05:01:04,425 | INFO     | ***************************************
[2025-07-28 01:01:35] 2025-07-28 05:01:04,425 | INFO     | ***  PanDA Pilot version 3.10.4.12  ***
[2025-07-28 01:01:35] 2025-07-28 05:01:04,425 | INFO     | ***************************************
[2025-07-28 01:01:35] 2025-07-28 05:01:04,425 | INFO     | 
[2025-07-28 01:01:35] 2025-07-28 05:01:04,429 | INFO     | architecture information:
[2025-07-28 01:01:35] 2025-07-28 05:01:04,429 | INFO     | executing command: cat /etc/os-release
[2025-07-28 01:01:35] 2025-07-28 05:01:04,444 | INFO     | cat /etc/os-release:
[2025-07-28 01:01:35] NAME="CentOS Linux"
[2025-07-28 01:01:35] VERSION="7 (Core)"
[2025-07-28 01:01:35] ID="centos"
[2025-07-28 01:01:35] ID_LIKE="rhel fedora"
[2025-07-28 01:01:35] VERSION_ID="7"
[2025-07-28 01:01:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-07-28 01:01:35] ANSI_COLOR="0;31"
[2025-07-28 01:01:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-07-28 01:01:35] HOME_URL="https://www.centos.org/"
[2025-07-28 01:01:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-07-28 01:01:35] 
[2025-07-28 01:01:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-07-28 01:01:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-07-28 01:01:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-07-28 01:01:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-07-28 01:01:35] 
[2025-07-28 01:01:35] 2025-07-28 05:01:04,444 | INFO     | ***************************************
[2025-07-28 01:01:35] 2025-07-28 05:01:04,948 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-07-28 01:01:35] 2025-07-28 05:01:04,966 | INFO     | sufficient remaining disk space (127980797952 B)
[2025-07-28 01:01:35] 2025-07-28 05:01:04,966 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-07-28 01:01:35] 2025-07-28 05:01:04,966 | INFO     | current server update state: UPDATING_FINAL
[2025-07-28 01:01:35] 2025-07-28 05:01:04,966 | INFO     | update_server=False
[2025-07-28 01:01:35] 2025-07-28 05:01:04,966 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-07-28 01:01:35] 2025-07-28 05:01:04,967 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:01:35] 2025-07-28 05:01:04,967 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-07-28 01:01:35] 2025-07-28 05:01:04,967 | INFO     | aborting loop
[2025-07-28 01:01:35] 2025-07-28 05:01:05,069 | INFO     | all payload control threads have been joined
[2025-07-28 01:01:35] 2025-07-28 05:01:05,339 | INFO     | all data control threads have been joined
[2025-07-28 01:01:35] 2025-07-28 05:01:05,343 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-07-28 01:01:35] 2025-07-28 05:01:05,687 | INFO     | all job control threads have been joined
[2025-07-28 01:01:35] 2025-07-28 05:01:05,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-07-28 01:01:35] 2025-07-28 05:01:05,971 | INFO     | [job] retrieve thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:05,972 | INFO     | [job] job monitor thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:05,973 | INFO     | [job] queue monitor thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:05,993 | INFO     | [payload] failed_post thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,075 | INFO     | [payload] control thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,344 | INFO     | [data] control thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,541 | INFO     | [payload] validate_post thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,692 | INFO     | [job] control thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,710 | INFO     | [data] copytool_in thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,781 | INFO     | [job] validate thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,927 | INFO     | [payload] validate_pre thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:06,954 | INFO     | [job] create_data_payload thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:07,220 | INFO     | [payload] execute_payloads thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:07,348 | INFO     | [data] copytool_out thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:09,889 | INFO     | [data] queue_monitor thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:15,974 | INFO     | job.realtimelogging is not enabled
[2025-07-28 01:01:35] 2025-07-28 05:01:16,979 | INFO     | [payload] run_realtimelog thread has finished
[2025-07-28 01:01:35] 2025-07-28 05:01:17,261 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140649010370368)>', '<ExcThread(monitor, started 140648267101952)>']
[2025-07-28 01:01:35] 2025-07-28 05:01:22,281 | INFO     | all workflow threads have been joined
[2025-07-28 01:01:35] 2025-07-28 05:01:22,281 | INFO     | end of generic workflow (traces error code: 0)
[2025-07-28 01:01:35] 2025-07-28 05:01:22,282 | INFO     | traces error code: 0
[2025-07-28 01:01:35] 2025-07-28 05:01:22,282 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-07-28 01:01:35] 2025-07-28 05:01:34,866 | INFO     | PID=2662213 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-07-28 01:01:35] 2025-07-28 05:01:34,869 | INFO     | .. there are 10 such processes running
[2025-07-28 01:01:35] 2025-07-28 05:01:34,869 | INFO     | found 0 job(s) in 20 queues
[2025-07-28 01:01:35] 2025-07-28 05:01:34,869 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-07-28 01:01:35] 2025-07-28 05:01:34,869 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-07-28 01:01:35] 2025-07-28 05:01:34,869 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-07-28 01:01:35] 2025-07-28 05:01:34,869 | INFO     | [monitor] control thread has ended
[2025-07-28 01:01:35] 2025-07-28 05:01:34,951 [wrapper] ==== pilot stdout END ====
[2025-07-28 01:01:35] 2025-07-28 05:01:34,953 [wrapper] ==== wrapper stdout RESUME ====
[2025-07-28 01:01:35] 2025-07-28 05:01:34,956 [wrapper] pilotpid: 2662213
[2025-07-28 01:01:35] 2025-07-28 05:01:34,958 [wrapper] Pilot exit status: 0
[2025-07-28 01:01:35] 2025-07-28 05:01:34,967 [wrapper] pandaids: 6747698589
[2025-07-28 01:01:35] 2025-07-28 05:01:35,012 [wrapper] cleanup supervisor_pilot 2811374 2662214
[2025-07-28 01:01:35] 2025-07-28 05:01:35,015 [wrapper] Test setup, not cleaning
[2025-07-28 01:01:35] 2025-07-28 05:01:35,018 [wrapper] apfmon messages muted
[2025-07-28 01:01:35] 2025-07-28 05:01:35,020 [wrapper] ==== wrapper stdout END ====
[2025-07-28 01:01:35] 2025-07-28 05:01:35,023 [wrapper] ==== wrapper stderr END ====
[2025-07-28 01:01:35]  *** Error codes and diagnostics ***
[2025-07-28 01:01:35]     "exeErrorCode": 0,
[2025-07-28 01:01:35]     "exeErrorDiag": "",
[2025-07-28 01:01:35]     "pilotErrorCode": 0,
[2025-07-28 01:01:35]     "pilotErrorDiag": "",
[2025-07-28 01:01:35]  *** Listing of results directory ***
[2025-07-28 01:01:35] total 356584
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas    530466 Jul 27 15:51 pilot3.tar.gz
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas      5112 Jul 27 16:01 queuedata.json
[2025-07-28 01:01:35] -rwx------. 1 boincer umatlas     36292 Jul 27 16:02 runpilot2-wrapper.sh
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas       100 Jul 27 23:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-07-28 01:01:35] -rwxr-xr-x. 1 boincer umatlas      7986 Jul 27 23:56 run_atlas
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas       105 Jul 27 23:56 job.xml
[2025-07-28 01:01:35] -rw-r--r--. 2 boincer umatlas 146065392 Jul 27 23:56 EVNT.45743347._002381.pool.root.1
[2025-07-28 01:01:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:56 start_atlas.sh
[2025-07-28 01:01:35] drwxrwx--x. 2 boincer umatlas      4096 Jul 27 23:56 shared
[2025-07-28 01:01:35] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 23:56 input.tar.gz
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas         0 Jul 27 23:56 boinc_lockfile
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas      2562 Jul 27 23:56 pandaJob.out
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas    980117 Jul 27 23:56 agis_schedconf.cvmfs.json
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas   1593052 Jul 27 23:56 agis_ddmendpoints.agis.ALL.json
[2025-07-28 01:01:35] drwx------. 4 boincer umatlas      4096 Jul 27 23:56 pilot3
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas      6947 Jul 28 00:58 init_data.xml
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas 213849806 Jul 28 01:00 HITS.45743349._055135.pool.root.1
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas       529 Jul 28 01:00 boinc_task_state.xml
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas      1025 Jul 28 01:00 memory_monitor_summary.json
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas    285956 Jul 28 01:00 log.45743349._055135.job.log.tgz.1
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas      7758 Jul 28 01:01 heartbeat.json
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas      8192 Jul 28 01:01 boinc_mmap_file
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas        27 Jul 28 01:01 wrapper_checkpoint.txt
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas       823 Jul 28 01:01 pilotlog.txt
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas        95 Jul 28 01:01 pilot_heartbeat.json
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas    391870 Jul 28 01:01 log.45743349._055135.job.log.1
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas       357 Jul 28 01:01 output.list
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas       620 Jul 28 01:01 runtime_log
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas    696320 Jul 28 01:01 result.tar.gz
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas       650 Jul 28 01:01 wX2MDm1kM07nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTKWLDmn7TXYm.diag
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas      8669 Jul 28 01:01 runtime_log.err
[2025-07-28 01:01:35] -rw-r--r--. 1 boincer umatlas     21404 Jul 28 01:01 stderr.txt
[2025-07-28 01:01:35] HITS file was successfully produced:
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas 213849806 Jul 28 01:00 shared/HITS.pool.root.1
[2025-07-28 01:01:35]  *** Contents of shared directory: ***
[2025-07-28 01:01:35] total 352716
[2025-07-28 01:01:35] -rw-r--r--. 2 boincer umatlas 146065392 Jul 27 23:56 ATLAS.root_0
[2025-07-28 01:01:35] -rw-r--r--. 2 boincer umatlas     15095 Jul 27 23:56 start_atlas.sh
[2025-07-28 01:01:35] -rw-r--r--. 2 boincer umatlas    542898 Jul 27 23:56 input.tar.gz
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas 213849806 Jul 28 01:00 HITS.pool.root.1
[2025-07-28 01:01:35] -rw-------. 1 boincer umatlas    696320 Jul 28 01:01 result.tar.gz
01:01:36 (2658511): run_atlas exited; CPU time 28090.907223
01:01:36 (2658511): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN